Wall clock time and date at job start Sat Apr 11 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38085 * 120.02886 * 2 1 4 4 C 1.38504 * 120.04935 * 180.29619 * 3 2 1 5 5 F 1.35101 * 119.94291 * 179.71934 * 4 3 2 6 6 C 1.38533 * 120.10775 * 359.70575 * 4 3 2 7 7 C 1.38047 * 120.05195 * 0.02562 * 6 4 3 8 8 C 1.38941 * 120.02238 * 179.74478 * 2 1 3 9 9 N 1.39830 * 120.05394 * 0.02562 * 8 2 1 10 10 C 1.37131 * 120.00265 * 89.72442 * 9 8 2 11 11 H 1.07996 * 119.99752 * 185.27467 * 10 9 8 12 12 C 1.38874 * 119.99885 * 5.26933 * 10 9 8 13 13 N 1.31431 * 120.00028 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00227 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46669 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47154 * 119.99948 * 14 12 10 17 17 H 1.48495 * 109.47100 * 239.99951 * 14 12 10 18 18 C 1.34784 * 120.00000 * 269.72066 * 9 8 2 19 19 O 1.21280 * 119.99948 * 5.38295 * 18 9 8 20 20 C 1.50700 * 119.99847 * 185.38499 * 18 9 8 21 21 H 1.08996 * 109.53770 * 24.95710 * 20 18 9 22 22 C 1.53874 * 109.64309 * 145.32547 * 20 18 9 23 23 C 1.55054 * 106.62026 * 167.03144 * 22 20 18 24 24 S 1.83282 * 102.56588 * 317.56192 * 23 22 20 25 25 O 1.42098 * 109.35475 * 136.61648 * 24 23 22 26 26 O 1.42110 * 109.35373 * 269.68192 * 24 23 22 27 27 C 1.54642 * 109.56279 * 264.55832 * 20 18 9 28 28 H 1.08995 * 109.47636 * 270.25657 * 1 2 3 29 29 H 1.09000 * 109.46619 * 30.25516 * 1 2 3 30 30 H 1.09002 * 109.47134 * 150.24873 * 1 2 3 31 31 H 1.08000 * 119.97408 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.97857 * 179.97438 * 6 4 3 33 33 H 1.08002 * 120.02495 * 179.97438 * 7 6 4 34 34 H 0.97000 * 120.00114 * 179.97438 * 13 12 10 35 35 H 1.08994 * 110.03246 * 47.74045 * 22 20 18 36 36 H 1.08999 * 110.06498 * 286.33774 * 22 20 18 37 37 H 1.09009 * 110.78625 * 199.29634 * 23 22 20 38 38 H 1.08996 * 110.79019 * 75.83378 * 23 22 20 39 39 H 1.08999 * 110.38952 * 93.35501 * 27 20 18 40 40 H 1.09000 * 110.44827 * 331.01858 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1955 0.0000 4 6 3.5830 1.1960 -0.0062 5 9 4.2569 2.3669 -0.0119 6 6 4.2784 -0.0022 -0.0063 7 6 3.5919 -1.1999 -0.0007 8 6 2.2021 -1.2030 0.0054 9 7 1.5046 -2.4149 0.0102 10 6 1.1580 -3.0113 -1.1749 11 1 0.5465 -3.9015 -1.1729 12 6 1.5934 -2.4707 -2.3778 13 7 2.3380 -1.3876 -2.3802 14 14 1.1208 -3.2827 -3.9923 15 1 0.2837 -4.4784 -3.7185 16 1 0.3529 -2.3213 -4.8238 17 1 2.3494 -3.6936 -4.7180 18 6 1.1729 -2.9968 1.1798 19 8 1.3920 -2.4237 2.2259 20 6 0.5298 -4.3597 1.1876 21 1 0.8011 -4.8960 0.2783 22 6 1.0090 -5.1508 2.4173 23 6 0.0752 -6.3821 2.5440 24 16 -1.5780 -5.6649 2.2093 25 8 -2.3014 -6.5317 1.3464 26 8 -2.1612 -5.2350 3.4318 27 6 -1.0071 -4.2066 1.2641 28 1 -0.3634 0.0046 1.0276 29 1 -0.3632 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5100 31 1 1.6580 2.1308 0.0004 32 1 5.3584 0.0007 -0.0115 33 1 4.1345 -2.1337 -0.0011 34 1 2.6424 -1.0102 -3.2203 35 1 0.9343 -4.5321 3.3116 36 1 2.0392 -5.4768 2.2741 37 1 0.1194 -6.7993 3.5502 38 1 0.3273 -7.1371 1.7995 39 1 -1.4395 -4.2112 0.2636 40 1 -1.2727 -3.2884 1.7880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602394249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:56 Heat of formation + Delta-G solvation = -128.708090 kcal Electronic energy + Delta-G solvation = -28586.150132 eV Core-core repulsion = 24407.514387 eV Total energy + Delta-G solvation = -4178.635745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.68712 -41.48171 -39.37303 -38.03972 -37.08487 -36.67966 -36.32777 -33.59909 -33.31626 -31.28700 -30.19759 -27.93829 -26.99442 -26.35648 -24.13532 -22.93597 -22.07068 -20.91627 -19.78369 -19.40350 -18.52741 -17.96117 -17.54624 -17.42122 -17.10666 -16.70492 -16.56732 -16.37832 -16.04415 -15.56111 -15.23997 -14.92239 -14.78178 -14.73664 -14.23656 -14.12221 -14.07475 -13.70838 -13.49276 -13.21525 -13.15215 -13.10874 -12.99951 -12.96467 -12.78943 -12.68167 -12.48677 -12.29006 -12.08888 -11.97122 -11.90159 -11.60779 -11.28960 -11.21937 -10.39499 -9.96379 -9.57669 -9.31189 -7.92050 -5.92216 -0.85889 0.56137 0.61566 1.39869 1.52964 1.58747 1.61323 1.92288 2.26199 2.68048 2.74722 2.93542 3.15879 3.20984 3.51457 3.52286 3.75973 3.80828 3.99795 4.01217 4.09028 4.13708 4.35706 4.42810 4.64097 4.65095 4.73769 4.77007 4.80295 4.86632 4.95036 5.04599 5.09258 5.18968 5.33852 5.41895 5.45626 5.55855 5.75393 5.92697 6.16408 6.53916 7.12044 7.50271 7.90337 8.74910 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.004410 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.719821 B = 6347.812502 C = 7534.381254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.071 4.071 3 C -0.153 4.153 4 C 0.058 3.942 5 F -0.154 7.154 6 C -0.152 4.152 7 C -0.075 4.075 8 C 0.231 3.769 9 N -0.417 5.417 10 C -0.353 4.353 11 H 0.130 0.870 12 C 0.003 3.997 13 N -0.873 5.873 14 Si 0.978 3.022 15 H -0.250 1.250 16 H -0.291 1.291 17 H -0.287 1.287 18 C 0.468 3.532 19 O -0.619 6.619 20 C -0.091 4.091 21 H 0.130 0.870 22 C -0.107 4.107 23 C -0.553 4.553 24 S 2.403 3.597 25 O -0.970 6.970 26 O -0.977 6.977 27 C -0.576 4.576 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.266 0.734 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.156 0.844 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.198 -6.284 2.750 6.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.072 4.072 3 C -0.173 4.173 4 C 0.039 3.961 5 F -0.133 7.133 6 C -0.171 4.171 7 C -0.094 4.094 8 C 0.139 3.861 9 N -0.133 5.133 10 C -0.479 4.479 11 H 0.147 0.853 12 C -0.201 4.201 13 N -0.510 5.510 14 Si 0.803 3.197 15 H -0.173 1.173 16 H -0.217 1.217 17 H -0.213 1.213 18 C 0.258 3.742 19 O -0.506 6.506 20 C -0.113 4.113 21 H 0.148 0.852 22 C -0.146 4.146 23 C -0.685 4.685 24 S 2.590 3.410 25 O -0.967 6.967 26 O -0.974 6.974 27 C -0.705 4.705 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.182 0.818 38 H 0.186 0.814 39 H 0.174 0.826 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.947 -6.146 3.316 7.249 hybrid contribution 0.924 0.734 -1.504 1.912 sum -1.023 -5.412 1.811 5.798 Atomic orbital electron populations 1.20561 0.90732 1.02838 1.01207 1.19775 0.96648 0.91780 0.99030 1.20756 0.92221 0.98589 1.05684 1.17517 0.90244 0.80821 1.07507 1.91390 1.80626 1.46544 1.94708 1.20794 1.00355 0.90744 1.05217 1.20707 0.93412 0.96931 0.98397 1.17110 0.90352 0.85573 0.93048 1.41542 1.48196 1.17284 1.06243 1.20226 1.33471 1.12442 0.81748 0.85280 1.25932 0.95721 0.96355 1.02074 1.70040 1.33369 1.20174 1.27371 0.85052 0.77818 0.78665 0.78116 1.17274 1.21726 1.21346 1.20334 0.82798 0.88742 0.82351 1.90582 1.60671 1.66894 1.32462 1.21693 0.91736 0.94739 1.03101 0.85170 1.22134 1.02093 0.92985 0.97429 1.30457 1.16342 1.07313 1.14424 1.08529 0.79525 0.77810 0.75110 1.93555 1.71418 1.64102 1.67670 1.93557 1.76884 1.82313 1.44682 1.30532 1.03296 1.20203 1.16511 0.92084 0.90992 0.91796 0.84453 0.84259 0.87174 0.92223 0.89596 0.86974 0.81788 0.81357 0.82586 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.70 9.77 71.23 0.70 -3.00 16 2 C -0.07 -3.02 5.35 -19.73 -0.11 -3.12 16 3 C -0.15 -6.11 9.67 22.30 0.22 -5.90 16 4 C 0.06 2.32 7.30 22.40 0.16 2.49 16 5 F -0.15 -5.77 17.27 44.97 0.78 -4.99 16 6 C -0.15 -6.01 10.02 22.29 0.22 -5.79 16 7 C -0.07 -3.23 8.68 22.40 0.19 -3.04 16 8 C 0.23 10.33 2.23 38.21 0.09 10.42 16 9 N -0.42 -17.76 1.79 -458.87 -0.82 -18.58 16 10 C -0.35 -14.59 8.53 84.02 0.72 -13.88 16 11 H 0.13 4.64 5.90 -2.91 -0.02 4.62 16 12 C 0.00 0.13 5.44 84.91 0.46 0.60 16 13 N -0.87 -40.46 9.33 21.65 0.20 -40.26 16 14 Si 0.98 35.14 29.55 68.60 2.03 37.16 16 15 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 16 H -0.29 -10.93 7.11 99.48 0.71 -10.23 16 17 H -0.29 -10.63 7.11 99.48 0.71 -9.92 16 18 C 0.47 18.50 6.47 87.66 0.57 19.07 16 19 O -0.62 -28.26 16.04 -3.03 -0.05 -28.31 16 20 C -0.09 -2.56 2.21 -10.69 -0.02 -2.58 16 21 H 0.13 3.27 6.22 -2.39 -0.01 3.26 16 22 C -0.11 -2.40 5.64 31.59 0.18 -2.22 16 23 C -0.55 -8.48 7.31 72.69 0.53 -7.95 16 24 S 2.40 54.73 6.09 -56.49 -0.34 54.38 16 25 O -0.97 -27.14 18.15 -127.47 -2.31 -29.45 16 26 O -0.98 -29.61 18.15 -127.47 -2.31 -31.92 16 27 C -0.58 -14.59 6.76 72.54 0.49 -14.10 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 2.41 8.09 -2.39 -0.02 2.39 16 30 H 0.06 2.59 6.91 -2.39 -0.02 2.58 16 31 H 0.14 4.75 8.06 -2.91 -0.02 4.72 16 32 H 0.14 4.72 8.06 -2.91 -0.02 4.69 16 33 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.27 12.28 8.31 -92.71 -0.77 11.51 16 35 H 0.09 2.20 7.48 -2.39 -0.02 2.18 16 36 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.16 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.17 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.16 3.51 8.14 -2.39 -0.02 3.49 16 40 H 0.13 3.57 7.89 -2.39 -0.02 3.55 16 Total: -1.00 -65.76 348.75 2.64 -63.12 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 1.08 Total: 27.87 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 4.39 Total: -29.02 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.62 Total: -58.84 kcal Atomic # 8 Polarization: -85.02 SS G_CDS: -4.67 Total: -89.69 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.78 Total: -4.99 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.16 kcal Atomic # 16 Polarization: 54.73 SS G_CDS: -0.34 Total: 54.38 kcal Total: -65.76 2.64 -63.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602394249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.587 kcal (2) G-P(sol) polarization free energy of solvation -65.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds