Wall clock time and date at job start Sat Apr 11 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47312 * 2 1 4 4 H 1.09000 * 109.58181 * 305.26737 * 3 2 1 5 5 C 1.53241 * 109.58233 * 185.00024 * 3 2 1 6 6 N 1.46376 * 109.49046 * 182.40670 * 5 3 2 7 7 S 1.65591 * 119.65069 * 245.08576 * 6 5 3 8 8 O 1.42101 * 106.40468 * 203.53832 * 7 6 5 9 9 O 1.42109 * 106.40233 * 336.46281 * 7 6 5 10 10 C 1.76208 * 107.21768 * 90.00000 * 7 6 5 11 11 C 1.38647 * 119.87579 * 90.00007 * 10 7 6 12 12 C 1.38619 * 120.50373 * 179.97438 * 11 10 7 13 13 C 1.37636 * 120.24370 * 359.97438 * 12 11 10 14 14 C 1.40696 * 119.74718 * 0.02562 * 13 12 11 15 15 C 1.41392 * 120.24291 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00131 * 150.23458 * 15 14 13 17 17 C 1.39943 * 120.00483 * 330.24001 * 15 14 13 18 18 N 1.30822 * 120.00685 * 161.72255 * 17 15 14 19 19 Si 1.86806 * 119.99491 * 341.71526 * 17 15 14 20 20 H 1.48496 * 109.46748 * 95.41510 * 19 17 15 21 21 H 1.48499 * 109.47251 * 215.41395 * 19 17 15 22 22 H 1.48500 * 109.47099 * 335.41838 * 19 17 15 23 23 C 1.37597 * 119.87453 * 269.72417 * 10 7 6 24 24 C 1.46383 * 120.70114 * 65.36392 * 6 5 3 25 25 C 1.53761 * 109.20528 * 294.63455 * 24 6 5 26 26 S 1.81735 * 108.75081 * 57.83438 * 25 24 6 27 27 H 1.08998 * 109.47269 * 59.99760 * 1 2 3 28 28 H 1.08988 * 109.47620 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46788 * 300.00567 * 1 2 3 30 30 H 1.09001 * 109.47130 * 239.99400 * 2 1 3 31 31 H 1.09004 * 109.46628 * 119.99656 * 2 1 3 32 32 H 1.09006 * 109.46716 * 62.40168 * 5 3 2 33 33 H 1.08996 * 109.46898 * 302.41769 * 5 3 2 34 34 H 1.08005 * 119.75154 * 0.02562 * 11 10 7 35 35 H 1.08000 * 119.87414 * 180.02562 * 12 11 10 36 36 H 1.08004 * 120.12439 * 180.02562 * 13 12 11 37 37 H 0.96996 * 120.00554 * 180.02562 * 18 17 15 38 38 H 1.08003 * 120.12854 * 0.02562 * 23 10 7 39 39 H 1.08995 * 109.47151 * 54.64192 * 24 6 5 40 40 H 1.09001 * 109.46307 * 174.63673 * 24 6 5 41 41 H 1.08995 * 109.69576 * 297.99828 * 25 24 6 42 42 H 1.08993 * 109.50917 * 177.55886 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9845 -0.8385 5 6 3.5673 1.4472 -0.1258 6 7 4.0578 2.8251 -0.0679 7 16 4.7941 3.4890 -1.3943 8 8 5.6204 4.5392 -0.9110 9 8 5.2892 2.4021 -2.1644 10 6 3.5351 4.2520 -2.3626 11 6 3.2009 5.5789 -2.1392 12 6 2.2128 6.1922 -2.8936 13 6 1.5524 5.4883 -3.8748 14 6 1.8833 4.1412 -4.1103 15 6 1.2119 3.4084 -5.1159 16 1 1.7207 2.6065 -5.6305 17 6 -0.1117 3.7219 -5.4448 18 7 -0.6174 3.3157 -6.5808 19 14 -1.1566 4.7204 -4.2612 20 1 -1.1044 6.1543 -4.6437 21 1 -2.5618 4.2437 -4.3182 22 1 -0.6340 4.5571 -2.8808 23 6 2.8912 3.5303 -3.3413 24 6 3.9097 3.6205 1.1520 25 6 2.4151 3.8628 1.4196 26 16 1.5784 2.2555 1.5584 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8548 0.9989 -1.0769 33 1 4.0010 0.8725 0.6924 34 1 3.7148 6.1392 -1.3721 35 1 1.9609 7.2265 -2.7113 36 1 0.7832 5.9682 -4.4617 37 1 -1.5347 3.5333 -6.8089 38 1 3.1559 2.4979 -3.5164 39 1 4.3492 3.0826 1.9920 40 1 4.4185 4.5763 1.0264 41 1 1.9818 4.4304 0.5961 42 1 2.2972 4.4177 2.3502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619488116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:19 Heat of formation + Delta-G solvation = -63.020942 kcal Electronic energy + Delta-G solvation = -26559.033337 eV Core-core repulsion = 22949.459176 eV Total energy + Delta-G solvation = -3609.574161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.02290 -37.67500 -37.01641 -35.54691 -34.72124 -33.86626 -30.84551 -30.74944 -30.25787 -28.57211 -25.47082 -24.08843 -22.75287 -22.15389 -21.45503 -20.99884 -18.99197 -18.27182 -17.56085 -16.45139 -16.21737 -16.09240 -15.48688 -15.15201 -14.96413 -14.71745 -14.51110 -13.96920 -13.87438 -13.38038 -13.29790 -13.11523 -12.96945 -12.86675 -12.33105 -12.11201 -12.06736 -11.97400 -11.81735 -11.65111 -11.62129 -11.41842 -11.18795 -11.11513 -11.05974 -10.91114 -10.73108 -10.39393 -10.12860 -9.90114 -9.73895 -9.45056 -9.13677 -8.35950 -7.96865 -7.61771 -7.16272 -4.72234 0.69930 1.74312 1.80476 2.33117 2.51765 2.92381 3.04487 3.09867 3.15645 3.76952 3.99524 4.17570 4.45277 4.61212 4.70725 4.82695 4.89579 5.07294 5.07573 5.18191 5.24965 5.44141 5.46939 5.52720 5.68273 5.71420 5.77656 5.83191 5.89477 5.92803 5.97637 6.11608 6.12174 6.31210 6.35177 6.39191 6.60071 6.78197 6.99051 7.10372 7.30507 7.53670 7.69018 8.10595 8.34122 8.53415 9.85381 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.005705 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.737810 B = 4907.056772 C = 6084.139609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C -0.071 4.071 4 H 0.101 0.899 5 C 0.121 3.879 6 N -1.002 6.002 7 S 2.682 3.318 8 O -0.967 6.967 9 O -0.963 6.963 10 C -0.625 4.625 11 C -0.160 4.160 12 C -0.090 4.090 13 C -0.197 4.197 14 C 0.075 3.925 15 C -0.442 4.442 16 H 0.096 0.904 17 C 0.084 3.916 18 N -0.797 5.797 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.244 1.244 23 C -0.104 4.104 24 C 0.119 3.881 25 C -0.107 4.107 26 S -0.253 6.253 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.288 0.712 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.008 -2.469 14.204 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.141 4.141 3 C -0.202 4.202 4 H 0.120 0.880 5 C -0.006 4.006 6 N -0.837 5.837 7 S 2.779 3.221 8 O -0.957 6.957 9 O -0.953 6.953 10 C -0.716 4.716 11 C -0.181 4.181 12 C -0.109 4.109 13 C -0.217 4.217 14 C 0.071 3.929 15 C -0.470 4.470 16 H 0.114 0.886 17 C -0.136 4.136 18 N -0.420 5.420 19 Si 0.732 3.268 20 H -0.194 1.194 21 H -0.213 1.213 22 H -0.167 1.167 23 C -0.125 4.125 24 C -0.008 4.008 25 C -0.257 4.257 26 S -0.026 6.026 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.092 -2.978 14.674 15.118 hybrid contribution -0.765 1.313 -0.959 1.797 sum 1.327 -1.665 13.714 13.878 Atomic orbital electron populations 1.21812 0.94834 1.01725 1.02884 1.21334 0.96983 0.92731 1.03059 1.23782 0.98599 1.00013 0.97783 0.88019 1.21616 0.92000 0.81954 1.05030 1.57598 1.77137 1.21578 1.27384 1.02050 0.74398 0.73210 0.72486 1.93514 1.64969 1.56909 1.80326 1.93538 1.78209 1.54122 1.69428 1.29974 1.20981 1.05824 1.14850 1.20018 1.01497 0.93111 1.03436 1.20700 0.96146 0.98188 0.95900 1.21300 1.03685 0.94842 1.01878 1.17777 0.92255 0.91491 0.91400 1.19537 0.97123 1.15958 1.14347 0.88595 1.26164 0.98831 0.93867 0.94754 1.69673 1.16493 1.36400 1.19412 0.86374 0.77902 0.79475 0.83022 1.19448 1.21274 1.16686 1.20836 0.98509 0.98174 0.95030 1.21601 0.94839 0.96858 0.87486 1.23997 0.98039 0.97139 1.06553 1.86587 1.69848 1.17565 1.28573 0.92076 0.92539 0.91916 0.90058 0.90994 0.87474 0.89539 0.87192 0.87891 0.87613 0.90097 0.86400 0.89552 0.87662 0.88825 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.75 37.16 0.36 -1.38 16 2 C -0.10 -1.10 5.41 -26.73 -0.14 -1.25 16 3 C -0.07 -0.91 2.75 -26.61 -0.07 -0.98 16 4 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 5 C 0.12 1.51 5.54 -3.98 -0.02 1.49 16 6 N -1.00 -13.80 3.09 -113.98 -0.35 -14.15 16 7 S 2.68 46.78 5.68 -107.50 -0.61 46.17 16 8 O -0.97 -18.08 15.75 -57.17 -0.90 -18.98 16 9 O -0.96 -18.75 15.75 -57.17 -0.90 -19.65 16 10 C -0.62 -12.46 5.97 -39.66 -0.24 -12.70 16 11 C -0.16 -3.13 9.53 -39.29 -0.37 -3.50 16 12 C -0.09 -1.83 10.02 -39.66 -0.40 -2.22 16 13 C -0.20 -4.48 7.18 -38.87 -0.28 -4.75 16 14 C 0.07 1.79 5.11 -106.83 -0.55 1.25 16 15 C -0.44 -11.26 9.57 -37.74 -0.36 -11.62 16 16 H 0.10 2.56 8.06 -52.48 -0.42 2.14 16 17 C 0.08 2.08 5.40 -17.34 -0.09 1.99 16 18 N -0.80 -20.11 13.93 55.55 0.77 -19.34 16 19 Si 0.91 19.45 24.52 -169.99 -4.17 15.29 16 20 H -0.27 -5.60 6.71 56.52 0.38 -5.22 16 21 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.24 -5.31 6.86 56.52 0.39 -4.92 16 23 C -0.10 -2.30 9.26 -38.87 -0.36 -2.66 16 24 C 0.12 1.37 6.29 -3.71 -0.02 1.35 16 25 C -0.11 -1.23 6.68 37.55 0.25 -0.98 16 26 S -0.25 -3.14 20.53 -107.50 -2.21 -5.35 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.55 8.14 -51.94 -0.42 0.12 16 29 H 0.06 0.73 7.18 -51.92 -0.37 0.35 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 1.38 6.80 -51.93 -0.35 1.02 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 1.91 7.60 -52.48 -0.40 1.51 16 35 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.11 2.37 4.73 -52.48 -0.25 2.12 16 37 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 38 H 0.12 2.48 7.60 -52.48 -0.40 2.08 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 1.19 6.80 -51.93 -0.35 0.84 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -28.87 356.76 -11.23 -40.10 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.95 Total: 6.51 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: -2.30 Total: -35.97 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.42 Total: -33.49 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -1.80 Total: -38.63 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.17 Total: 15.29 kcal Atomic # 16 Polarization: 43.64 SS G_CDS: -2.82 Total: 40.82 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.87 -11.23 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.924 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds