Wall clock time and date at job start Sat Apr 11 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47312 * 2 1 4 4 H 1.09000 * 109.58181 * 305.26737 * 3 2 1 5 5 C 1.53241 * 109.58233 * 185.00024 * 3 2 1 6 6 N 1.46376 * 109.49046 * 182.40670 * 5 3 2 7 7 S 1.65591 * 119.65069 * 245.08576 * 6 5 3 8 8 O 1.42101 * 106.40468 * 203.53832 * 7 6 5 9 9 O 1.42109 * 106.40233 * 336.46281 * 7 6 5 10 10 C 1.76208 * 107.21768 * 90.00000 * 7 6 5 11 11 C 1.38647 * 119.87579 * 90.00007 * 10 7 6 12 12 C 1.38619 * 120.50373 * 179.97438 * 11 10 7 13 13 C 1.37636 * 120.24370 * 359.97438 * 12 11 10 14 14 C 1.40696 * 119.74718 * 0.02562 * 13 12 11 15 15 C 1.41392 * 120.24291 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00131 * 150.23458 * 15 14 13 17 17 C 1.39943 * 120.00483 * 330.24001 * 15 14 13 18 18 N 1.30822 * 120.00685 * 161.72255 * 17 15 14 19 19 Si 1.86806 * 119.99491 * 341.71526 * 17 15 14 20 20 H 1.48496 * 109.46748 * 95.41510 * 19 17 15 21 21 H 1.48499 * 109.47251 * 215.41395 * 19 17 15 22 22 H 1.48500 * 109.47099 * 335.41838 * 19 17 15 23 23 C 1.37597 * 119.87453 * 269.72417 * 10 7 6 24 24 C 1.46383 * 120.70114 * 65.36392 * 6 5 3 25 25 C 1.53761 * 109.20528 * 294.63455 * 24 6 5 26 26 S 1.81735 * 108.75081 * 57.83438 * 25 24 6 27 27 H 1.08998 * 109.47269 * 59.99760 * 1 2 3 28 28 H 1.08988 * 109.47620 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46788 * 300.00567 * 1 2 3 30 30 H 1.09001 * 109.47130 * 239.99400 * 2 1 3 31 31 H 1.09004 * 109.46628 * 119.99656 * 2 1 3 32 32 H 1.09006 * 109.46716 * 62.40168 * 5 3 2 33 33 H 1.08996 * 109.46898 * 302.41769 * 5 3 2 34 34 H 1.08005 * 119.75154 * 0.02562 * 11 10 7 35 35 H 1.08000 * 119.87414 * 180.02562 * 12 11 10 36 36 H 1.08004 * 120.12439 * 180.02562 * 13 12 11 37 37 H 0.96996 * 120.00554 * 180.02562 * 18 17 15 38 38 H 1.08003 * 120.12854 * 0.02562 * 23 10 7 39 39 H 1.08995 * 109.47151 * 54.64192 * 24 6 5 40 40 H 1.09001 * 109.46307 * 174.63673 * 24 6 5 41 41 H 1.08995 * 109.69576 * 297.99828 * 25 24 6 42 42 H 1.08993 * 109.50917 * 177.55886 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9845 -0.8385 5 6 3.5673 1.4472 -0.1258 6 7 4.0578 2.8251 -0.0679 7 16 4.7941 3.4890 -1.3943 8 8 5.6204 4.5392 -0.9110 9 8 5.2892 2.4021 -2.1644 10 6 3.5351 4.2520 -2.3626 11 6 3.2009 5.5789 -2.1392 12 6 2.2128 6.1922 -2.8936 13 6 1.5524 5.4883 -3.8748 14 6 1.8833 4.1412 -4.1103 15 6 1.2119 3.4084 -5.1159 16 1 1.7207 2.6065 -5.6305 17 6 -0.1117 3.7219 -5.4448 18 7 -0.6174 3.3157 -6.5808 19 14 -1.1566 4.7204 -4.2612 20 1 -1.1044 6.1543 -4.6437 21 1 -2.5618 4.2437 -4.3182 22 1 -0.6340 4.5571 -2.8808 23 6 2.8912 3.5303 -3.3413 24 6 3.9097 3.6205 1.1520 25 6 2.4151 3.8628 1.4196 26 16 1.5784 2.2555 1.5584 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8548 0.9989 -1.0769 33 1 4.0010 0.8725 0.6924 34 1 3.7148 6.1392 -1.3721 35 1 1.9609 7.2265 -2.7113 36 1 0.7832 5.9682 -4.4617 37 1 -1.5347 3.5333 -6.8089 38 1 3.1559 2.4979 -3.5164 39 1 4.3492 3.0826 1.9920 40 1 4.4185 4.5763 1.0264 41 1 1.9818 4.4304 0.5961 42 1 2.2972 4.4177 2.3502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619488116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:18 Heat of formation + Delta-G solvation = -80.274099 kcal Electronic energy + Delta-G solvation = -26559.781490 eV Core-core repulsion = 22949.459176 eV Total energy + Delta-G solvation = -3610.322314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.73201 -38.72504 -38.48103 -37.03155 -35.67880 -35.67043 -32.58579 -31.94104 -31.72763 -29.59027 -27.28262 -25.04359 -24.24181 -23.35877 -22.72639 -22.40176 -20.43033 -19.71990 -18.92455 -18.13274 -17.37003 -17.35920 -17.00057 -16.65128 -16.17391 -16.00402 -15.68591 -15.44134 -14.90382 -14.87776 -14.71898 -14.34819 -14.20325 -14.05970 -13.94649 -13.62375 -13.44959 -13.32910 -13.19100 -13.05296 -12.92245 -12.81288 -12.63753 -12.41020 -12.19812 -12.03880 -11.99056 -11.84656 -11.65376 -11.58888 -11.19030 -10.72938 -10.30901 -10.02504 -9.73126 -9.00124 -8.59680 -6.63296 -0.69781 0.12599 0.61054 0.79087 1.17940 1.32471 1.39299 1.56394 1.84240 2.01317 2.38245 2.61549 3.20598 3.24136 3.56316 3.61662 3.89801 3.95295 4.12405 4.13748 4.27685 4.28527 4.34571 4.39081 4.50849 4.54896 4.63083 4.70794 4.77020 4.77783 4.83244 4.90116 4.96400 5.02579 5.09520 5.20880 5.27246 5.38707 5.39484 5.47676 5.58536 5.72491 5.94867 6.20445 6.54068 6.65780 8.07944 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.005705 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.737810 B = 4907.056772 C = 6084.139609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.100 4.100 3 C -0.072 4.072 4 H 0.069 0.931 5 C 0.117 3.883 6 N -0.993 5.993 7 S 2.706 3.294 8 O -0.973 6.973 9 O -0.985 6.985 10 C -0.635 4.635 11 C -0.143 4.143 12 C -0.094 4.094 13 C -0.207 4.207 14 C 0.057 3.943 15 C -0.481 4.481 16 H 0.060 0.940 17 C 0.051 3.949 18 N -0.839 5.839 19 Si 0.957 3.043 20 H -0.253 1.253 21 H -0.274 1.274 22 H -0.251 1.251 23 C -0.120 4.120 24 C 0.113 3.887 25 C -0.106 4.106 26 S -0.256 6.256 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.107 0.893 37 H 0.296 0.704 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -1.131 17.788 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.203 4.203 4 H 0.087 0.913 5 C -0.010 4.010 6 N -0.831 5.831 7 S 2.799 3.201 8 O -0.963 6.963 9 O -0.976 6.976 10 C -0.723 4.723 11 C -0.163 4.163 12 C -0.113 4.113 13 C -0.226 4.226 14 C 0.053 3.947 15 C -0.510 4.510 16 H 0.078 0.922 17 C -0.165 4.165 18 N -0.465 5.465 19 Si 0.780 3.220 20 H -0.178 1.178 21 H -0.200 1.200 22 H -0.175 1.175 23 C -0.141 4.141 24 C -0.013 4.013 25 C -0.256 4.256 26 S -0.029 6.029 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.094 0.906 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.720 -1.616 18.229 18.502 hybrid contribution -0.786 0.927 -1.876 2.235 sum 1.934 -0.689 16.354 16.482 Atomic orbital electron populations 1.21792 0.95263 1.02410 1.01622 1.21369 0.96577 0.91801 1.04190 1.23736 0.98657 1.00831 0.97030 0.91278 1.21811 0.91883 0.81381 1.05877 1.57381 1.76864 1.22085 1.26739 1.01377 0.73694 0.72554 0.72466 1.93500 1.64988 1.57453 1.80376 1.93510 1.78605 1.54680 1.70757 1.30506 1.20970 1.06372 1.14442 1.20565 1.00159 0.92847 1.02763 1.21152 0.95492 0.99929 0.94743 1.21483 1.04089 0.94386 1.02666 1.17924 0.92935 0.92318 0.91484 1.19469 0.98360 1.16705 1.16482 0.92170 1.26784 0.99194 0.94694 0.95801 1.69701 1.17373 1.38624 1.20784 0.85609 0.76873 0.79008 0.80542 1.17844 1.20030 1.17488 1.20848 0.98950 0.98423 0.95849 1.21927 0.95096 0.97305 0.87004 1.24074 0.97644 0.96469 1.07386 1.86599 1.70474 1.18254 1.27576 0.94227 0.90917 0.92202 0.89698 0.89004 0.88332 0.86469 0.83959 0.84005 0.87537 0.89286 0.86956 0.86656 0.86962 0.90582 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.75 71.98 0.70 -2.66 16 2 C -0.10 -2.06 5.41 30.59 0.17 -1.89 16 3 C -0.07 -1.76 2.75 30.67 0.08 -1.68 16 4 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 5 C 0.12 2.70 5.54 86.48 0.48 3.18 16 6 N -0.99 -24.92 3.09 -514.53 -1.59 -26.51 16 7 S 2.71 89.75 5.68 -56.49 -0.32 89.43 16 8 O -0.97 -33.51 15.75 -128.00 -2.02 -35.52 16 9 O -0.99 -37.85 15.75 -128.00 -2.02 -39.87 16 10 C -0.63 -24.68 5.97 22.22 0.13 -24.55 16 11 C -0.14 -5.19 9.53 22.46 0.21 -4.98 16 12 C -0.09 -3.57 10.02 22.22 0.22 -3.35 16 13 C -0.21 -9.26 7.18 22.73 0.16 -9.10 16 14 C 0.06 2.81 5.11 -21.29 -0.11 2.70 16 15 C -0.48 -26.22 9.57 23.46 0.22 -26.00 16 16 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 17 C 0.05 2.65 5.40 85.26 0.46 3.11 16 18 N -0.84 -44.57 13.93 21.83 0.30 -44.26 16 19 Si 0.96 40.52 24.52 68.60 1.68 42.21 16 20 H -0.25 -10.02 6.71 99.48 0.67 -9.35 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.25 -10.79 6.86 99.48 0.68 -10.11 16 23 C -0.12 -5.43 9.26 22.73 0.21 -5.22 16 24 C 0.11 2.16 6.29 86.66 0.54 2.70 16 25 C -0.11 -2.08 6.68 72.24 0.48 -1.59 16 26 S -0.26 -5.76 20.53 -56.49 -1.16 -6.92 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.33 7.18 -2.38 -0.02 1.32 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.10 2.47 6.80 -2.38 -0.02 2.46 16 33 H 0.12 2.04 8.14 -2.39 -0.02 2.03 16 34 H 0.14 4.28 7.60 -2.91 -0.02 4.26 16 35 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 36 H 0.11 4.70 4.73 -2.91 -0.01 4.69 16 37 H 0.30 14.07 8.30 -92.71 -0.77 13.30 16 38 H 0.11 5.05 7.60 -2.91 -0.02 5.03 16 39 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 2.06 6.80 -2.39 -0.02 2.04 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -64.49 356.76 -0.18 -64.67 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.96 Total: 26.09 kcal Atomic # 6 Polarization: -73.29 SS G_CDS: 3.98 Total: -69.31 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -1.28 Total: -70.77 kcal Atomic # 8 Polarization: -71.36 SS G_CDS: -4.03 Total: -75.39 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.68 Total: 42.21 kcal Atomic # 16 Polarization: 83.99 SS G_CDS: -1.48 Total: 82.51 kcal Total: -64.49 -0.18 -64.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.608 kcal (2) G-P(sol) polarization free energy of solvation -64.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds