Wall clock time and date at job start Sat Apr 11 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52989 * 109.47750 * 2 1 4 4 H 1.09001 * 109.58422 * 54.72429 * 3 2 1 5 5 C 1.53235 * 109.58945 * 174.99980 * 3 2 1 6 6 N 1.46373 * 109.49335 * 177.44882 * 5 3 2 7 7 S 1.65604 * 119.64599 * 114.89021 * 6 5 3 8 8 O 1.42104 * 106.39981 * 203.54102 * 7 6 5 9 9 O 1.42100 * 106.40281 * 336.45666 * 7 6 5 10 10 C 1.76194 * 107.21979 * 90.00343 * 7 6 5 11 11 C 1.38655 * 119.87872 * 89.99593 * 10 7 6 12 12 C 1.38610 * 120.50129 * 179.97438 * 11 10 7 13 13 C 1.37639 * 120.24870 * 359.97438 * 12 11 10 14 14 C 1.40692 * 119.74558 * 0.02562 * 13 12 11 15 15 C 1.41396 * 120.24268 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99766 * 155.24304 * 15 14 13 17 17 C 1.39944 * 120.00024 * 335.23609 * 15 14 13 18 18 N 1.30818 * 119.99940 * 342.28096 * 17 15 14 19 19 Si 1.86806 * 119.99827 * 162.27797 * 17 15 14 20 20 H 1.48503 * 109.46928 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.46932 * 120.00178 * 19 17 15 22 22 H 1.48503 * 109.46910 * 240.00659 * 19 17 15 23 23 C 1.37597 * 119.87288 * 269.72578 * 10 7 6 24 24 C 1.46378 * 120.70668 * 294.91417 * 6 5 3 25 25 C 1.53239 * 109.48786 * 65.08741 * 24 6 5 26 26 S 1.81741 * 109.58225 * 294.31444 * 3 2 1 27 27 H 1.08999 * 109.47415 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47088 * 300.00327 * 1 2 3 29 29 H 1.09004 * 109.46678 * 60.00130 * 1 2 3 30 30 H 1.09003 * 109.47088 * 239.99673 * 2 1 3 31 31 H 1.09002 * 109.46947 * 120.00341 * 2 1 3 32 32 H 1.09000 * 109.46601 * 297.45434 * 5 3 2 33 33 H 1.08998 * 109.46849 * 57.44155 * 5 3 2 34 34 H 1.08002 * 119.74887 * 0.02562 * 11 10 7 35 35 H 1.08001 * 119.87286 * 180.02562 * 12 11 10 36 36 H 1.08002 * 120.12397 * 180.02562 * 13 12 11 37 37 H 0.97006 * 119.99403 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.13103 * 359.97438 * 23 10 7 39 39 H 1.09002 * 109.46864 * 185.08683 * 24 6 5 40 40 H 1.09003 * 109.46688 * 305.08257 * 24 6 5 41 41 H 1.08997 * 109.58708 * 62.13601 * 25 24 6 42 42 H 1.08998 * 109.57933 * 182.41663 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 1 1.6028 1.9846 0.8384 5 6 3.5673 1.4472 0.1258 6 7 4.0581 2.8248 0.0645 7 16 4.7941 3.4919 1.3895 8 8 4.6561 4.9002 1.2585 9 8 4.3240 2.7666 2.5174 10 6 6.5169 3.1466 1.2584 11 6 7.3519 4.0374 0.6015 12 6 8.7092 3.7789 0.4913 13 6 9.2430 2.6325 1.0347 14 6 8.4052 1.7213 1.7035 15 6 8.9426 0.5406 2.2661 16 1 8.4372 0.0558 3.0884 17 6 10.1290 0.0002 1.7574 18 7 10.5562 0.3582 0.5740 19 14 11.1027 -1.2324 2.7685 20 1 10.4110 -1.4685 4.0613 21 1 11.2069 -2.5121 2.0225 22 1 12.4637 -0.6967 3.0254 23 6 7.0294 1.9964 1.8132 24 6 3.9049 3.6192 -1.1554 25 6 2.4157 3.8592 -1.4255 26 16 1.5786 2.2517 -1.5604 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8547 1.0012 1.0780 33 1 4.0009 0.8703 -0.6910 34 1 6.9418 4.9401 0.1732 35 1 9.3504 4.4800 -0.0222 36 1 10.3010 2.4332 0.9479 37 1 11.3788 -0.0161 0.2216 38 1 6.3780 1.3062 2.3286 39 1 4.4104 4.5769 -1.0311 40 1 4.3447 3.0826 -1.9960 41 1 1.9824 4.4289 -0.6034 42 1 2.2981 4.4139 -2.3564 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619488117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:23 Heat of formation + Delta-G solvation = -65.755523 kcal Electronic energy + Delta-G solvation = -25743.606767 eV Core-core repulsion = 22133.914026 eV Total energy + Delta-G solvation = -3609.692741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -37.70411 -37.65832 -36.89837 -35.42591 -34.79378 -33.90208 -30.82514 -30.13722 -29.86277 -28.61068 -25.54604 -24.11979 -22.46723 -21.89217 -21.55044 -21.04069 -18.89796 -18.17568 -17.36176 -16.36774 -16.08868 -15.94006 -15.36575 -15.19441 -14.87405 -14.62689 -14.42126 -13.98237 -13.53401 -13.47663 -13.34668 -13.19068 -12.90822 -12.64477 -12.17639 -12.04297 -11.96434 -11.72081 -11.66433 -11.48363 -11.42860 -11.42563 -11.22451 -11.13391 -11.05469 -10.96075 -10.76395 -10.63899 -9.85080 -9.79554 -9.71037 -9.40947 -9.10665 -8.10383 -7.76583 -7.70169 -6.98076 -4.59157 0.82694 1.66300 2.11665 2.43854 2.57261 2.97211 3.00260 3.03751 3.28854 3.79021 4.13492 4.33633 4.45087 4.62807 4.77234 4.79528 4.89254 4.99143 5.12993 5.25972 5.34175 5.36544 5.42286 5.52858 5.60419 5.76216 5.81028 5.84616 5.94794 5.97743 6.03124 6.10509 6.14948 6.52134 6.58611 6.70536 6.84386 6.98800 7.15468 7.31170 7.66467 7.75151 7.88310 8.34732 8.61467 8.65964 9.97457 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.003610 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.386223 B = 7754.814064 C = 8749.304204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.064 4.064 4 H 0.092 0.908 5 C 0.122 3.878 6 N -1.002 6.002 7 S 2.682 3.318 8 O -0.971 6.971 9 O -0.967 6.967 10 C -0.630 4.630 11 C -0.149 4.149 12 C -0.120 4.120 13 C -0.118 4.118 14 C 0.093 3.907 15 C -0.460 4.460 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.793 5.793 19 Si 0.911 3.089 20 H -0.258 1.258 21 H -0.273 1.273 22 H -0.271 1.271 23 C -0.126 4.126 24 C 0.120 3.880 25 C -0.100 4.100 26 S -0.254 6.254 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.283 0.717 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.868 0.681 -4.732 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.194 4.194 4 H 0.111 0.889 5 C -0.005 4.005 6 N -0.837 5.837 7 S 2.780 3.220 8 O -0.961 6.961 9 O -0.957 6.957 10 C -0.722 4.722 11 C -0.170 4.170 12 C -0.139 4.139 13 C -0.137 4.137 14 C 0.089 3.911 15 C -0.489 4.489 16 H 0.102 0.898 17 C -0.143 4.143 18 N -0.418 5.418 19 Si 0.735 3.265 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.196 1.196 23 C -0.148 4.148 24 C -0.007 4.007 25 C -0.250 4.250 26 S -0.028 6.028 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.795 0.711 -5.089 13.788 hybrid contribution 1.970 -0.301 0.910 2.191 sum -10.825 0.410 -4.180 11.611 Atomic orbital electron populations 1.21802 0.94962 1.01748 1.02499 1.21364 0.96707 0.92845 1.03489 1.23696 0.98846 0.99853 0.97028 0.88934 1.21555 0.91651 0.82327 1.04990 1.57597 1.73900 1.22538 1.29664 1.01976 0.74766 0.72991 0.72298 1.93505 1.87146 1.29606 1.85885 1.93520 1.80862 1.73684 1.47681 1.29716 1.21630 1.05958 1.14930 1.20055 0.94309 0.98498 1.04142 1.20811 0.94513 0.97663 1.00922 1.21643 1.00185 0.92342 0.99560 1.17681 0.90246 0.92562 0.90587 1.19658 1.06081 1.07550 1.15619 0.89831 1.25937 0.97029 0.97098 0.94221 1.69784 1.20216 1.37683 1.14105 0.86209 0.79661 0.79713 0.80945 1.18175 1.19808 1.19555 1.20757 0.95989 0.95480 1.02554 1.21436 0.94785 0.96670 0.87856 1.23854 0.98216 0.96657 1.06311 1.86646 1.69002 1.18054 1.29082 0.92462 0.92578 0.91826 0.90625 0.90017 0.87732 0.89513 0.87692 0.88315 0.85731 0.90572 0.87125 0.87902 0.89612 0.89474 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.75 37.16 0.36 -1.01 16 2 C -0.10 -1.04 5.41 -26.74 -0.14 -1.18 16 3 C -0.06 -0.75 2.75 -26.62 -0.07 -0.83 16 4 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 5 C 0.12 1.63 5.46 -3.99 -0.02 1.61 16 6 N -1.00 -14.81 3.10 -114.29 -0.35 -15.17 16 7 S 2.68 49.51 5.64 -107.50 -0.61 48.90 16 8 O -0.97 -19.11 15.85 -57.17 -0.91 -20.02 16 9 O -0.97 -19.63 15.85 -57.17 -0.91 -20.54 16 10 C -0.63 -13.49 5.97 -39.66 -0.24 -13.72 16 11 C -0.15 -3.17 9.53 -39.29 -0.37 -3.54 16 12 C -0.12 -2.64 10.02 -39.66 -0.40 -3.04 16 13 C -0.12 -2.87 8.70 -38.87 -0.34 -3.21 16 14 C 0.09 2.35 5.57 -106.83 -0.60 1.75 16 15 C -0.46 -11.55 9.05 -37.74 -0.34 -11.89 16 16 H 0.08 2.02 7.91 -52.48 -0.41 1.61 16 17 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 18 N -0.79 -19.19 10.97 55.55 0.61 -18.58 16 19 Si 0.91 17.67 29.59 -169.99 -5.03 12.64 16 20 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 23 C -0.13 -2.96 9.26 -38.87 -0.36 -3.32 16 24 C 0.12 1.50 6.17 -3.98 -0.02 1.47 16 25 C -0.10 -1.11 6.67 37.28 0.25 -0.86 16 26 S -0.25 -2.98 20.52 -107.50 -2.21 -5.18 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.61 7.18 -51.93 -0.37 0.24 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.45 6.97 -51.93 -0.36 1.09 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.11 1.99 7.60 -52.49 -0.40 1.59 16 35 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.12 3.10 6.18 -52.49 -0.32 2.77 16 37 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 38 H 0.11 2.46 7.60 -52.49 -0.40 2.06 16 39 H 0.10 1.28 6.97 -51.93 -0.36 0.92 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -28.95 362.32 -12.32 -41.27 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.00 Total: 7.29 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: -2.39 Total: -36.07 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.26 Total: -33.75 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.81 Total: -40.56 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 16 Polarization: 46.53 SS G_CDS: -2.81 Total: 43.72 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.95 -12.32 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.485 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds