Wall clock time and date at job start Sat Apr 11 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52989 * 109.47750 * 2 1 4 4 H 1.09001 * 109.58422 * 54.72429 * 3 2 1 5 5 C 1.53235 * 109.58945 * 174.99980 * 3 2 1 6 6 N 1.46373 * 109.49335 * 177.44882 * 5 3 2 7 7 S 1.65604 * 119.64599 * 114.89021 * 6 5 3 8 8 O 1.42104 * 106.39981 * 203.54102 * 7 6 5 9 9 O 1.42100 * 106.40281 * 336.45666 * 7 6 5 10 10 C 1.76194 * 107.21979 * 90.00343 * 7 6 5 11 11 C 1.38655 * 119.87872 * 89.99593 * 10 7 6 12 12 C 1.38610 * 120.50129 * 179.97438 * 11 10 7 13 13 C 1.37639 * 120.24870 * 359.97438 * 12 11 10 14 14 C 1.40692 * 119.74558 * 0.02562 * 13 12 11 15 15 C 1.41396 * 120.24268 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99766 * 155.24304 * 15 14 13 17 17 C 1.39944 * 120.00024 * 335.23609 * 15 14 13 18 18 N 1.30818 * 119.99940 * 342.28096 * 17 15 14 19 19 Si 1.86806 * 119.99827 * 162.27797 * 17 15 14 20 20 H 1.48503 * 109.46928 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.46932 * 120.00178 * 19 17 15 22 22 H 1.48503 * 109.46910 * 240.00659 * 19 17 15 23 23 C 1.37597 * 119.87288 * 269.72578 * 10 7 6 24 24 C 1.46378 * 120.70668 * 294.91417 * 6 5 3 25 25 C 1.53239 * 109.48786 * 65.08741 * 24 6 5 26 26 S 1.81741 * 109.58225 * 294.31444 * 3 2 1 27 27 H 1.08999 * 109.47415 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47088 * 300.00327 * 1 2 3 29 29 H 1.09004 * 109.46678 * 60.00130 * 1 2 3 30 30 H 1.09003 * 109.47088 * 239.99673 * 2 1 3 31 31 H 1.09002 * 109.46947 * 120.00341 * 2 1 3 32 32 H 1.09000 * 109.46601 * 297.45434 * 5 3 2 33 33 H 1.08998 * 109.46849 * 57.44155 * 5 3 2 34 34 H 1.08002 * 119.74887 * 0.02562 * 11 10 7 35 35 H 1.08001 * 119.87286 * 180.02562 * 12 11 10 36 36 H 1.08002 * 120.12397 * 180.02562 * 13 12 11 37 37 H 0.97006 * 119.99403 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.13103 * 359.97438 * 23 10 7 39 39 H 1.09002 * 109.46864 * 185.08683 * 24 6 5 40 40 H 1.09003 * 109.46688 * 305.08257 * 24 6 5 41 41 H 1.08997 * 109.58708 * 62.13601 * 25 24 6 42 42 H 1.08998 * 109.57933 * 182.41663 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 1 1.6028 1.9846 0.8384 5 6 3.5673 1.4472 0.1258 6 7 4.0581 2.8248 0.0645 7 16 4.7941 3.4919 1.3895 8 8 4.6561 4.9002 1.2585 9 8 4.3240 2.7666 2.5174 10 6 6.5169 3.1466 1.2584 11 6 7.3519 4.0374 0.6015 12 6 8.7092 3.7789 0.4913 13 6 9.2430 2.6325 1.0347 14 6 8.4052 1.7213 1.7035 15 6 8.9426 0.5406 2.2661 16 1 8.4372 0.0558 3.0884 17 6 10.1290 0.0002 1.7574 18 7 10.5562 0.3582 0.5740 19 14 11.1027 -1.2324 2.7685 20 1 10.4110 -1.4685 4.0613 21 1 11.2069 -2.5121 2.0225 22 1 12.4637 -0.6967 3.0254 23 6 7.0294 1.9964 1.8132 24 6 3.9049 3.6192 -1.1554 25 6 2.4157 3.8592 -1.4255 26 16 1.5786 2.2517 -1.5604 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8547 1.0012 1.0780 33 1 4.0009 0.8703 -0.6910 34 1 6.9418 4.9401 0.1732 35 1 9.3504 4.4800 -0.0222 36 1 10.3010 2.4332 0.9479 37 1 11.3788 -0.0161 0.2216 38 1 6.3780 1.3062 2.3286 39 1 4.4104 4.5769 -1.0311 40 1 4.3447 3.0826 -1.9960 41 1 1.9824 4.4289 -0.6034 42 1 2.2981 4.4139 -2.3564 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619488117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:22 Heat of formation + Delta-G solvation = -81.362877 kcal Electronic energy + Delta-G solvation = -25744.283552 eV Core-core repulsion = 22133.914026 eV Total energy + Delta-G solvation = -3610.369527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.47042 -38.74469 -38.44748 -36.99541 -35.69496 -35.68014 -31.94126 -31.80102 -31.59927 -29.59115 -27.36519 -25.04966 -23.76023 -23.40420 -22.82688 -22.40646 -20.37400 -19.63612 -18.83710 -17.80154 -17.40413 -17.23428 -16.93185 -16.53492 -16.17345 -15.93029 -15.59375 -15.24860 -15.06782 -14.89801 -14.34118 -14.33286 -14.20920 -13.96641 -13.71351 -13.37298 -13.30056 -13.14594 -13.06748 -13.05718 -12.89421 -12.81550 -12.64096 -12.41054 -12.22764 -12.18925 -11.98323 -11.65905 -11.57111 -11.39325 -11.16353 -10.75420 -10.32007 -9.86785 -9.58291 -8.74987 -8.63203 -6.46976 -0.65435 0.36677 0.75633 0.81989 1.37367 1.43679 1.52128 1.52561 1.92033 2.16907 2.53244 2.67196 3.24014 3.44664 3.58603 3.61589 3.88693 3.92778 4.09962 4.24690 4.27488 4.32702 4.40319 4.49300 4.55817 4.61428 4.75368 4.80181 4.81617 4.87510 4.89878 4.94665 5.02312 5.12402 5.17766 5.22167 5.37569 5.42031 5.47443 5.53843 5.86330 5.91835 6.07954 6.50656 6.78083 6.82475 8.23176 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.003610 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.386223 B = 7754.814064 C = 8749.304204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.062 4.062 4 H 0.084 0.916 5 C 0.115 3.885 6 N -0.995 5.995 7 S 2.708 3.292 8 O -0.979 6.979 9 O -0.987 6.987 10 C -0.638 4.638 11 C -0.149 4.149 12 C -0.122 4.122 13 C -0.141 4.141 14 C 0.064 3.936 15 C -0.497 4.497 16 H 0.079 0.921 17 C 0.040 3.960 18 N -0.820 5.820 19 Si 0.981 3.019 20 H -0.260 1.260 21 H -0.263 1.263 22 H -0.263 1.263 23 C -0.146 4.146 24 C 0.110 3.890 25 C -0.098 4.098 26 S -0.255 6.255 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.292 0.708 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.698 0.757 -5.691 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.192 4.192 4 H 0.103 0.897 5 C -0.011 4.011 6 N -0.833 5.833 7 S 2.803 3.197 8 O -0.970 6.970 9 O -0.977 6.977 10 C -0.727 4.727 11 C -0.170 4.170 12 C -0.141 4.141 13 C -0.161 4.161 14 C 0.061 3.939 15 C -0.526 4.526 16 H 0.097 0.903 17 C -0.176 4.176 18 N -0.445 5.445 19 Si 0.802 3.198 20 H -0.183 1.183 21 H -0.188 1.188 22 H -0.188 1.188 23 C -0.167 4.167 24 C -0.016 4.016 25 C -0.248 4.248 26 S -0.028 6.028 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.597 0.798 -6.056 14.907 hybrid contribution 2.113 -0.239 1.117 2.402 sum -11.484 0.559 -4.939 12.514 Atomic orbital electron populations 1.21770 0.94139 1.02555 1.02171 1.21403 0.97371 0.91593 1.03971 1.23677 0.97383 1.01117 0.97068 0.89733 1.21739 0.92983 0.81456 1.04963 1.57361 1.72886 1.23362 1.29646 1.01203 0.73407 0.72523 0.72539 1.93485 1.86834 1.30302 1.86332 1.93490 1.80588 1.74117 1.49531 1.30244 1.24077 1.04902 1.13463 1.20456 0.94069 0.99149 1.03339 1.21148 0.95463 0.97261 1.00228 1.21650 0.99744 0.93581 1.01144 1.18033 0.91325 0.93192 0.91346 1.19883 1.07804 1.08432 1.16463 0.90302 1.26712 0.97253 0.98690 0.94961 1.69814 1.20844 1.38721 1.15170 0.85165 0.78074 0.77482 0.79117 1.18331 1.18789 1.18758 1.20846 0.95552 0.96706 1.03573 1.21728 0.96197 0.96668 0.86992 1.23908 0.96741 0.96505 1.07641 1.86675 1.69079 1.18423 1.28620 0.91122 0.92677 0.92332 0.90195 0.89512 0.88647 0.88558 0.84986 0.85479 0.86912 0.89705 0.87140 0.87551 0.88268 0.89792 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.75 71.98 0.70 -1.74 16 2 C -0.10 -1.91 5.41 30.59 0.17 -1.75 16 3 C -0.06 -1.38 2.75 30.67 0.08 -1.30 16 4 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 5 C 0.12 2.98 5.46 86.48 0.47 3.46 16 6 N -0.99 -28.14 3.10 -515.51 -1.60 -29.74 16 7 S 2.71 97.93 5.64 -56.49 -0.32 97.61 16 8 O -0.98 -37.00 15.85 -128.00 -2.03 -39.03 16 9 O -0.99 -40.03 15.85 -128.00 -2.03 -42.05 16 10 C -0.64 -27.21 5.97 22.22 0.13 -27.08 16 11 C -0.15 -6.20 9.53 22.46 0.21 -5.99 16 12 C -0.12 -5.32 10.02 22.22 0.22 -5.10 16 13 C -0.14 -7.08 8.70 22.73 0.20 -6.88 16 14 C 0.06 3.36 5.57 -21.29 -0.12 3.24 16 15 C -0.50 -25.86 9.05 23.46 0.21 -25.65 16 16 H 0.08 4.00 7.91 -2.91 -0.02 3.97 16 17 C 0.04 1.90 5.14 85.26 0.44 2.34 16 18 N -0.82 -40.38 10.97 21.83 0.24 -40.14 16 19 Si 0.98 36.45 29.59 68.60 2.03 38.48 16 20 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 22 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 23 C -0.15 -7.01 9.26 22.73 0.21 -6.80 16 24 C 0.11 2.51 6.17 86.48 0.53 3.05 16 25 C -0.10 -1.92 6.67 72.06 0.48 -1.43 16 26 S -0.25 -5.43 20.52 -56.49 -1.16 -6.59 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 1.02 7.18 -2.39 -0.02 1.01 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 2.65 6.97 -2.39 -0.02 2.63 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.13 4.70 7.60 -2.91 -0.02 4.68 16 35 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 36 H 0.11 5.80 6.18 -2.91 -0.02 5.79 16 37 H 0.29 12.87 8.30 -92.70 -0.77 12.11 16 38 H 0.11 5.14 7.60 -2.91 -0.02 5.11 16 39 H 0.11 2.38 6.97 -2.39 -0.02 2.36 16 40 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -62.36 362.32 0.10 -62.26 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 1.02 Total: 30.84 kcal Atomic # 6 Polarization: -75.58 SS G_CDS: 3.95 Total: -71.63 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -1.36 Total: -69.88 kcal Atomic # 8 Polarization: -77.03 SS G_CDS: -4.06 Total: -81.09 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Atomic # 16 Polarization: 92.50 SS G_CDS: -1.48 Total: 91.02 kcal Total: -62.36 0.10 -62.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.104 kcal (2) G-P(sol) polarization free energy of solvation -62.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds