Wall clock time and date at job start Sat Apr 11 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.48456 * 2 1 4 4 C 1.54001 * 109.47612 * 120.01208 * 2 1 3 5 5 C 1.45823 * 113.29261 * 200.99271 * 4 2 1 6 6 S 1.82218 * 112.65177 * 294.87456 * 5 4 2 7 7 C 1.79950 * 103.24399 * 73.94543 * 6 5 4 8 8 C 1.53489 * 110.98807 * 275.93257 * 7 6 5 9 9 N 1.44670 * 109.47978 * 239.96978 * 2 1 3 10 10 S 1.65601 * 119.72667 * 321.49557 * 9 2 1 11 11 O 1.42102 * 106.40349 * 336.45359 * 10 9 2 12 12 O 1.42102 * 106.40249 * 203.53697 * 10 9 2 13 13 C 1.76202 * 107.21989 * 89.99479 * 10 9 2 14 14 C 1.38650 * 119.87673 * 270.01995 * 13 10 9 15 15 C 1.38613 * 120.50171 * 179.97438 * 14 13 10 16 16 C 1.37640 * 120.24888 * 359.76584 * 15 14 13 17 17 C 1.40699 * 119.74193 * 0.49277 * 16 15 14 18 18 C 1.41392 * 120.24263 * 179.76708 * 17 16 15 19 19 H 1.08001 * 119.99891 * 204.87276 * 18 17 16 20 20 C 1.39947 * 120.00461 * 24.85974 * 18 17 16 21 21 N 1.30824 * 119.99745 * 17.44317 * 20 18 17 22 22 Si 1.86794 * 120.00213 * 197.43543 * 20 18 17 23 23 H 1.48494 * 109.47363 * 265.18569 * 22 20 18 24 24 H 1.48501 * 109.46977 * 145.18546 * 22 20 18 25 25 H 1.48501 * 109.47079 * 25.19166 * 22 20 18 26 26 C 1.37600 * 119.87523 * 90.00179 * 13 10 9 27 27 H 1.09000 * 109.47336 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46780 * 300.02629 * 1 2 3 29 29 H 1.08992 * 109.47000 * 60.02392 * 1 2 3 30 30 H 1.09001 * 108.72032 * 321.98264 * 4 2 1 31 31 H 1.09000 * 108.71541 * 80.01033 * 4 2 1 32 32 H 1.09001 * 108.84311 * 55.68814 * 5 4 2 33 33 H 1.08993 * 108.84744 * 174.05773 * 5 4 2 34 34 H 1.08998 * 109.14661 * 36.43345 * 7 6 5 35 35 H 1.09003 * 109.14871 * 155.57941 * 7 6 5 36 36 H 1.08998 * 108.36746 * 281.77317 * 8 7 6 37 37 H 1.09004 * 108.18040 * 164.73248 * 8 7 6 38 38 H 1.08004 * 119.74915 * 0.02562 * 14 13 10 39 39 H 1.08002 * 119.87890 * 180.02562 * 15 14 13 40 40 H 1.07997 * 120.12848 * 180.27745 * 16 15 14 41 41 H 0.96993 * 120.00351 * 179.97438 * 21 20 18 42 42 H 1.08003 * 120.12391 * 359.97189 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0435 -0.7262 1.2572 5 6 3.4147 -0.3741 1.6069 6 16 4.6194 -0.9102 0.3493 7 6 4.3568 0.2553 -0.9964 8 6 3.1941 -0.1929 -1.8927 9 7 2.0125 -0.6826 -1.1808 10 16 1.2253 -2.0329 -1.7279 11 8 0.5351 -2.5755 -0.6105 12 8 2.1732 -2.7695 -2.4883 13 6 -0.0106 -1.4929 -2.8617 14 6 -1.2828 -1.1875 -2.4029 15 6 -2.2647 -0.7609 -3.2834 16 6 -1.9845 -0.6315 -4.6247 17 6 -0.6985 -0.9439 -5.1024 18 6 -0.4005 -0.8194 -6.4790 19 1 0.3948 -1.4061 -6.9145 20 6 -1.1361 0.0639 -7.2772 21 7 -1.8499 1.0086 -6.7208 22 14 -1.0989 -0.1059 -9.1370 23 1 -0.0658 0.8024 -9.6964 24 1 -2.4279 0.2536 -9.6936 25 1 -0.7735 -1.5087 -9.4996 26 6 0.2906 -1.3755 -4.1992 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5143 0.8898 29 1 -0.3633 0.5134 -0.8901 30 1 1.3933 -0.4762 2.0957 31 1 1.9912 -1.8014 1.0859 32 1 3.4822 0.7079 1.7206 33 1 3.6668 -0.8425 2.5582 34 1 4.1325 1.2373 -0.5801 35 1 5.2653 0.3208 -1.5950 36 1 3.5527 -0.9852 -2.5498 37 1 2.8964 0.6533 -2.5120 38 1 -1.5102 -1.2818 -1.3513 39 1 -3.2522 -0.5253 -2.9149 40 1 -2.7497 -0.2947 -5.3083 41 1 -2.3595 1.6211 -7.2739 42 1 1.2825 -1.6132 -4.5544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619499489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:44 Heat of formation + Delta-G solvation = -50.050249 kcal Electronic energy + Delta-G solvation = -26550.952777 eV Core-core repulsion = 22941.941067 eV Total energy + Delta-G solvation = -3609.011709 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.38990 -37.66970 -36.82391 -35.29344 -33.89191 -33.73382 -31.43734 -30.12655 -29.81901 -28.73811 -25.54925 -23.96371 -23.13201 -21.89213 -21.43459 -20.98932 -18.55127 -17.68321 -16.98401 -16.56217 -16.43025 -15.95585 -15.26970 -15.02074 -14.73295 -14.69810 -14.35908 -14.06317 -13.60674 -13.51359 -13.29384 -13.13166 -12.68492 -12.46051 -12.30894 -12.00621 -11.91604 -11.71622 -11.51731 -11.43898 -11.37199 -11.25399 -11.18237 -11.00091 -10.94741 -10.81134 -10.62237 -10.24503 -9.81790 -9.75707 -9.60168 -9.36095 -8.81235 -8.05359 -7.72350 -7.71265 -6.95126 -4.55970 0.95924 1.66326 2.17091 2.48949 2.60767 2.98465 3.00243 3.06831 3.44343 3.81013 4.22528 4.36382 4.54551 4.59385 4.76313 4.88082 4.93720 5.09666 5.23395 5.29076 5.38808 5.41612 5.50426 5.70214 5.72151 5.74828 5.82756 5.94072 6.02333 6.11435 6.17430 6.31036 6.57080 6.63334 6.72586 6.76420 6.94915 7.03165 7.19439 7.35570 7.70021 7.78575 7.91879 8.37876 8.64587 8.69414 10.00356 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.003704 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.178150 B = 7556.746980 C = 8132.302814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.160 3.840 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.072 4.072 6 S -0.254 6.254 7 C -0.094 4.094 8 C 0.115 3.885 9 N -0.984 5.984 10 S 2.691 3.309 11 O -0.969 6.969 12 O -0.968 6.968 13 C -0.633 4.633 14 C -0.150 4.150 15 C -0.122 4.122 16 C -0.117 4.117 17 C 0.092 3.908 18 C -0.461 4.461 19 H 0.083 0.917 20 C 0.076 3.924 21 N -0.795 5.795 22 Si 0.910 3.090 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.125 4.125 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.283 0.717 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.335 3.301 11.171 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C 0.053 3.947 3 H 0.098 0.902 4 C -0.189 4.189 5 C -0.220 4.220 6 S -0.028 6.028 7 C -0.245 4.245 8 C -0.013 4.013 9 N -0.819 5.819 10 S 2.789 3.211 11 O -0.959 6.959 12 O -0.958 6.958 13 C -0.724 4.724 14 C -0.171 4.171 15 C -0.142 4.142 16 C -0.137 4.137 17 C 0.089 3.911 18 C -0.490 4.490 19 H 0.101 0.899 20 C -0.142 4.142 21 N -0.420 5.420 22 Si 0.734 3.266 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.146 4.146 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.155 1.833 11.433 13.611 hybrid contribution -1.311 1.785 -1.341 2.589 sum 5.844 3.618 10.092 12.210 Atomic orbital electron populations 1.23108 0.93849 1.06734 1.03947 1.20555 0.94720 0.96125 0.83335 0.90166 1.21265 0.95108 1.03705 0.98825 1.22167 0.96648 1.03848 0.99342 1.86691 1.50585 1.49151 1.16356 1.23672 1.02190 1.00132 0.98466 1.21315 0.84679 1.01687 0.93633 1.57142 1.38697 1.48476 1.37575 1.01758 0.73413 0.72337 0.73557 1.93430 1.74622 1.76350 1.51516 1.93500 1.61725 1.68246 1.72332 1.29801 1.12446 1.20227 1.09965 1.20259 0.92569 1.05844 0.98410 1.20820 0.97565 1.01313 0.94455 1.21635 0.96996 1.00857 0.94229 1.17670 0.90711 0.89709 0.93033 1.19621 1.16001 1.20481 0.92923 0.89914 1.25923 0.93273 0.93293 1.01742 1.69774 1.22511 1.11291 1.38455 0.86257 0.78588 0.80140 0.81607 1.19417 1.19932 1.18223 1.20772 0.98710 1.04469 0.90678 0.87635 0.90835 0.90353 0.89838 0.89501 0.90284 0.87871 0.89616 0.86570 0.88334 0.90894 0.87075 0.88411 0.85791 0.90611 0.87189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.96 7.14 37.16 0.27 -2.69 16 2 C 0.16 2.04 2.39 -68.39 -0.16 1.88 16 3 H 0.08 0.87 7.52 -51.93 -0.39 0.48 16 4 C -0.15 -1.73 4.66 -29.60 -0.14 -1.86 16 5 C -0.07 -0.73 5.79 33.76 0.20 -0.54 16 6 S -0.25 -3.17 21.62 -107.50 -2.32 -5.49 16 7 C -0.09 -1.01 5.90 37.41 0.22 -0.79 16 8 C 0.11 1.54 6.09 -3.85 -0.02 1.52 16 9 N -0.98 -14.93 2.59 -107.79 -0.28 -15.20 16 10 S 2.69 51.46 4.99 -107.50 -0.54 50.93 16 11 O -0.97 -19.03 12.84 -57.17 -0.73 -19.76 16 12 O -0.97 -20.82 15.70 -57.17 -0.90 -21.72 16 13 C -0.63 -13.65 5.78 -39.66 -0.23 -13.88 16 14 C -0.15 -3.15 7.53 -39.29 -0.30 -3.44 16 15 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 16 C -0.12 -2.87 8.70 -38.87 -0.34 -3.21 16 17 C 0.09 2.35 5.57 -106.83 -0.60 1.75 16 18 C -0.46 -11.68 9.05 -37.74 -0.34 -12.02 16 19 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 20 C 0.08 1.80 5.15 -17.34 -0.09 1.71 16 21 N -0.80 -19.34 10.96 55.55 0.61 -18.73 16 22 Si 0.91 17.82 29.59 -169.99 -5.03 12.79 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 26 C -0.12 -2.97 9.26 -38.87 -0.36 -3.33 16 27 H 0.11 1.64 3.54 -51.93 -0.18 1.46 16 28 H 0.07 0.79 8.12 -51.93 -0.42 0.36 16 29 H 0.08 1.16 6.75 -51.93 -0.35 0.81 16 30 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 31 H 0.09 1.23 6.72 -51.93 -0.35 0.89 16 32 H 0.08 0.66 8.11 -51.92 -0.42 0.24 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.77 7.91 -51.80 -0.41 0.36 16 35 H 0.12 1.05 8.14 -51.80 -0.42 0.63 16 36 H 0.10 1.45 6.69 -51.93 -0.35 1.10 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.11 2.07 5.39 -52.48 -0.28 1.79 16 39 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.12 3.09 6.17 -52.49 -0.32 2.77 16 41 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 42 H 0.11 2.51 7.60 -52.48 -0.40 2.12 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -29.16 343.77 -11.83 -40.99 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.53 Total: 8.99 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: -2.29 Total: -37.98 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.33 Total: -33.93 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.63 Total: -41.48 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 48.29 SS G_CDS: -2.86 Total: 45.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.16 -11.83 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.055 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds