Wall clock time and date at job start Sat Apr 11 2020 06:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.48456 * 2 1 4 4 C 1.54001 * 109.47612 * 120.01208 * 2 1 3 5 5 C 1.45823 * 113.29261 * 200.99271 * 4 2 1 6 6 S 1.82218 * 112.65177 * 294.87456 * 5 4 2 7 7 C 1.79950 * 103.24399 * 73.94543 * 6 5 4 8 8 C 1.53489 * 110.98807 * 275.93257 * 7 6 5 9 9 N 1.44670 * 109.47978 * 239.96978 * 2 1 3 10 10 S 1.65601 * 119.72667 * 321.49557 * 9 2 1 11 11 O 1.42102 * 106.40349 * 336.45359 * 10 9 2 12 12 O 1.42102 * 106.40249 * 203.53697 * 10 9 2 13 13 C 1.76202 * 107.21989 * 89.99479 * 10 9 2 14 14 C 1.38650 * 119.87673 * 270.01995 * 13 10 9 15 15 C 1.38613 * 120.50171 * 179.97438 * 14 13 10 16 16 C 1.37640 * 120.24888 * 359.76584 * 15 14 13 17 17 C 1.40699 * 119.74193 * 0.49277 * 16 15 14 18 18 C 1.41392 * 120.24263 * 179.76708 * 17 16 15 19 19 H 1.08001 * 119.99891 * 204.87276 * 18 17 16 20 20 C 1.39947 * 120.00461 * 24.85974 * 18 17 16 21 21 N 1.30824 * 119.99745 * 17.44317 * 20 18 17 22 22 Si 1.86794 * 120.00213 * 197.43543 * 20 18 17 23 23 H 1.48494 * 109.47363 * 265.18569 * 22 20 18 24 24 H 1.48501 * 109.46977 * 145.18546 * 22 20 18 25 25 H 1.48501 * 109.47079 * 25.19166 * 22 20 18 26 26 C 1.37600 * 119.87523 * 90.00179 * 13 10 9 27 27 H 1.09000 * 109.47336 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46780 * 300.02629 * 1 2 3 29 29 H 1.08992 * 109.47000 * 60.02392 * 1 2 3 30 30 H 1.09001 * 108.72032 * 321.98264 * 4 2 1 31 31 H 1.09000 * 108.71541 * 80.01033 * 4 2 1 32 32 H 1.09001 * 108.84311 * 55.68814 * 5 4 2 33 33 H 1.08993 * 108.84744 * 174.05773 * 5 4 2 34 34 H 1.08998 * 109.14661 * 36.43345 * 7 6 5 35 35 H 1.09003 * 109.14871 * 155.57941 * 7 6 5 36 36 H 1.08998 * 108.36746 * 281.77317 * 8 7 6 37 37 H 1.09004 * 108.18040 * 164.73248 * 8 7 6 38 38 H 1.08004 * 119.74915 * 0.02562 * 14 13 10 39 39 H 1.08002 * 119.87890 * 180.02562 * 15 14 13 40 40 H 1.07997 * 120.12848 * 180.27745 * 16 15 14 41 41 H 0.96993 * 120.00351 * 179.97438 * 21 20 18 42 42 H 1.08003 * 120.12391 * 359.97189 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0435 -0.7262 1.2572 5 6 3.4147 -0.3741 1.6069 6 16 4.6194 -0.9102 0.3493 7 6 4.3568 0.2553 -0.9964 8 6 3.1941 -0.1929 -1.8927 9 7 2.0125 -0.6826 -1.1808 10 16 1.2253 -2.0329 -1.7279 11 8 0.5351 -2.5755 -0.6105 12 8 2.1732 -2.7695 -2.4883 13 6 -0.0106 -1.4929 -2.8617 14 6 -1.2828 -1.1875 -2.4029 15 6 -2.2647 -0.7609 -3.2834 16 6 -1.9845 -0.6315 -4.6247 17 6 -0.6985 -0.9439 -5.1024 18 6 -0.4005 -0.8194 -6.4790 19 1 0.3948 -1.4061 -6.9145 20 6 -1.1361 0.0639 -7.2772 21 7 -1.8499 1.0086 -6.7208 22 14 -1.0989 -0.1059 -9.1370 23 1 -0.0658 0.8024 -9.6964 24 1 -2.4279 0.2536 -9.6936 25 1 -0.7735 -1.5087 -9.4996 26 6 0.2906 -1.3755 -4.1992 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5143 0.8898 29 1 -0.3633 0.5134 -0.8901 30 1 1.3933 -0.4762 2.0957 31 1 1.9912 -1.8014 1.0859 32 1 3.4822 0.7079 1.7206 33 1 3.6668 -0.8425 2.5582 34 1 4.1325 1.2373 -0.5801 35 1 5.2653 0.3208 -1.5950 36 1 3.5527 -0.9852 -2.5498 37 1 2.8964 0.6533 -2.5120 38 1 -1.5102 -1.2818 -1.3513 39 1 -3.2522 -0.5253 -2.9149 40 1 -2.7497 -0.2947 -5.3083 41 1 -2.3595 1.6211 -7.2739 42 1 1.2825 -1.6132 -4.5544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619499489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:43 Heat of formation + Delta-G solvation = -66.621799 kcal Electronic energy + Delta-G solvation = -26551.671373 eV Core-core repulsion = 22941.941067 eV Total energy + Delta-G solvation = -3609.730306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.59313 -39.35342 -38.35881 -36.89666 -35.69095 -34.71951 -32.46875 -31.88868 -31.55620 -29.80702 -27.36047 -24.96144 -24.15327 -23.59553 -22.80555 -22.51402 -20.19508 -19.24286 -18.14154 -17.91486 -17.65927 -17.38745 -16.90373 -16.53078 -16.22773 -15.69911 -15.51437 -15.26992 -15.13197 -15.03772 -14.43830 -14.33624 -14.14438 -13.77714 -13.65767 -13.34146 -13.28151 -13.16159 -13.12395 -13.03451 -12.84645 -12.71114 -12.50165 -12.37659 -12.30593 -12.15568 -11.81844 -11.58026 -11.38917 -11.28974 -11.12648 -10.67050 -10.02524 -9.81485 -9.54106 -8.73702 -8.67151 -6.45757 -0.55059 0.39763 0.82258 0.83944 1.36841 1.43451 1.51622 1.65885 2.06343 2.17168 2.56955 2.74395 3.33139 3.47518 3.59810 3.74805 3.86209 4.02409 4.19435 4.27838 4.30156 4.34210 4.46949 4.56667 4.59223 4.71744 4.81693 4.82655 4.84142 4.88940 4.92053 4.98055 5.02539 5.09596 5.19562 5.32821 5.40012 5.50055 5.55804 5.78851 5.88384 5.93179 6.10139 6.51810 6.79103 6.84097 8.24255 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.003704 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.178150 B = 7556.746980 C = 8132.302814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.151 3.849 3 H 0.111 0.889 4 C -0.146 4.146 5 C -0.062 4.062 6 S -0.313 6.313 7 C -0.079 4.079 8 C 0.106 3.894 9 N -0.976 5.976 10 S 2.711 3.289 11 O -0.973 6.973 12 O -0.997 6.997 13 C -0.639 4.639 14 C -0.143 4.143 15 C -0.124 4.124 16 C -0.139 4.139 17 C 0.064 3.936 18 C -0.500 4.500 19 H 0.076 0.924 20 C 0.041 3.959 21 N -0.821 5.821 22 Si 0.980 3.020 23 H -0.261 1.261 24 H -0.263 1.263 25 H -0.262 1.262 26 C -0.147 4.147 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.292 0.708 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.456 4.973 12.840 15.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C 0.045 3.955 3 H 0.129 0.871 4 C -0.186 4.186 5 C -0.209 4.209 6 S -0.086 6.086 7 C -0.229 4.229 8 C -0.021 4.021 9 N -0.814 5.814 10 S 2.806 3.194 11 O -0.964 6.964 12 O -0.987 6.987 13 C -0.728 4.728 14 C -0.163 4.163 15 C -0.143 4.143 16 C -0.158 4.158 17 C 0.061 3.939 18 C -0.529 4.529 19 H 0.094 0.906 20 C -0.175 4.175 21 N -0.447 5.447 22 Si 0.800 3.200 23 H -0.185 1.185 24 H -0.187 1.187 25 H -0.186 1.186 26 C -0.168 4.168 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.250 3.507 13.099 15.377 hybrid contribution -1.342 1.278 -1.674 2.498 sum 5.907 4.785 11.425 13.723 Atomic orbital electron populations 1.23092 0.94427 1.05482 1.04882 1.20902 0.94408 0.97545 0.82607 0.87146 1.21246 0.96689 1.01637 0.99067 1.22223 0.94541 1.05603 0.98510 1.86963 1.52170 1.51018 1.18492 1.23658 1.01402 1.00363 0.97437 1.21515 0.85027 1.01284 0.94303 1.56884 1.38595 1.47778 1.38162 1.01141 0.72654 0.72866 0.72727 1.93428 1.74927 1.77177 1.50846 1.93459 1.62193 1.69815 1.73268 1.30282 1.13917 1.18777 1.09854 1.20646 0.91979 1.04099 0.99613 1.21167 0.99204 1.00366 0.93584 1.21642 0.96548 1.02289 0.95363 1.18006 0.91623 0.90549 0.93725 1.19840 1.17345 1.21986 0.93754 0.90558 1.26683 0.92421 0.92344 1.06060 1.69800 1.22867 1.11698 1.40286 0.85217 0.79132 0.79833 0.75774 1.18528 1.18713 1.18588 1.20816 0.98419 1.05868 0.91719 0.89758 0.87491 0.91910 0.87021 0.92460 0.87500 0.86411 0.86939 0.85017 0.90417 0.89877 0.84382 0.85424 0.86903 0.89729 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.35 7.14 71.98 0.51 -4.84 16 2 C 0.15 3.40 2.39 45.67 0.11 3.51 16 3 H 0.11 1.88 7.52 -2.39 -0.02 1.87 16 4 C -0.15 -2.92 4.66 28.73 0.13 -2.78 16 5 C -0.06 -1.02 5.79 69.78 0.40 -0.62 16 6 S -0.31 -7.23 21.62 -56.49 -1.22 -8.45 16 7 C -0.08 -1.50 5.90 72.15 0.43 -1.07 16 8 C 0.11 2.74 6.09 86.56 0.53 3.27 16 9 N -0.98 -28.40 2.59 -494.93 -1.28 -29.68 16 10 S 2.71 103.93 4.99 -56.49 -0.28 103.65 16 11 O -0.97 -37.70 12.84 -128.00 -1.64 -39.34 16 12 O -1.00 -44.18 15.70 -128.00 -2.01 -46.19 16 13 C -0.64 -27.98 5.78 22.22 0.13 -27.85 16 14 C -0.14 -5.93 7.53 22.46 0.17 -5.76 16 15 C -0.12 -5.41 10.02 22.22 0.22 -5.19 16 16 C -0.14 -6.98 8.70 22.73 0.20 -6.78 16 17 C 0.06 3.41 5.57 -21.29 -0.12 3.29 16 18 C -0.50 -26.50 9.05 23.46 0.21 -26.29 16 19 H 0.08 3.96 7.90 -2.91 -0.02 3.93 16 20 C 0.04 1.97 5.15 85.26 0.44 2.41 16 21 N -0.82 -40.65 10.96 21.83 0.24 -40.41 16 22 Si 0.98 36.93 29.59 68.60 2.03 38.96 16 23 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 24 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 C -0.15 -7.29 9.26 22.73 0.21 -7.08 16 27 H 0.08 2.44 3.54 -2.39 -0.01 2.43 16 28 H 0.11 1.84 8.12 -2.39 -0.02 1.82 16 29 H 0.06 1.72 6.75 -2.39 -0.02 1.70 16 30 H 0.11 1.63 7.92 -2.39 -0.02 1.62 16 31 H 0.06 1.52 6.72 -2.39 -0.02 1.51 16 32 H 0.11 1.23 8.11 -2.39 -0.02 1.21 16 33 H 0.12 1.65 8.14 -2.40 -0.02 1.63 16 34 H 0.11 1.55 7.91 -2.47 -0.02 1.53 16 35 H 0.13 2.10 8.14 -2.47 -0.02 2.08 16 36 H 0.08 2.33 6.69 -2.39 -0.02 2.32 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.14 4.93 5.39 -2.91 -0.02 4.91 16 39 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 40 H 0.11 5.83 6.17 -2.91 -0.02 5.81 16 41 H 0.29 12.95 8.30 -92.71 -0.77 12.18 16 42 H 0.10 5.11 7.60 -2.91 -0.02 5.09 16 Total: -1.00 -65.97 343.77 0.45 -65.53 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 1.04 Total: 31.71 kcal Atomic # 6 Polarization: -79.34 SS G_CDS: 3.58 Total: -75.77 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -1.04 Total: -70.09 kcal Atomic # 8 Polarization: -81.88 SS G_CDS: -3.65 Total: -85.53 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Atomic # 16 Polarization: 96.70 SS G_CDS: -1.50 Total: 95.20 kcal Total: -65.97 0.45 -65.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.095 kcal (2) G-P(sol) polarization free energy of solvation -65.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds