Wall clock time and date at job start Sat Apr 11 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 119.99924 * 2 1 4 4 H 1.48502 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47215 * 299.99513 * 3 2 1 6 6 H 1.48495 * 109.47326 * 59.99858 * 3 2 1 7 7 C 1.38945 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08012 * 119.99670 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00368 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99896 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00215 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99973 * 179.97438 * 10 9 7 13 13 O 1.45197 * 109.47372 * 179.97438 * 12 10 9 14 14 C 1.34225 * 117.00038 * 180.02562 * 13 12 10 15 15 O 1.20825 * 120.00047 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99990 * 180.02562 * 14 13 12 17 17 C 1.53006 * 109.47184 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47184 * 180.02562 * 17 16 14 19 19 O 1.21296 * 119.99939 * 359.97438 * 18 17 16 20 20 C 1.46826 * 120.00232 * 179.97438 * 18 17 16 21 21 C 1.40041 * 120.16791 * 359.72657 * 20 18 17 22 22 C 1.37625 * 119.87550 * 179.69622 * 21 20 18 23 23 C 1.38840 * 120.22464 * 0.59818 * 22 21 20 24 24 F 1.35093 * 119.82632 * 179.69509 * 23 22 21 25 25 C 1.38534 * 120.34233 * 359.67608 * 23 22 21 26 26 C 1.38128 * 120.12071 * 0.02562 * 25 23 22 27 27 F 1.35101 * 120.11436 * 179.97438 * 26 25 23 28 28 H 0.97007 * 119.99652 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99667 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46702 * 59.99515 * 12 10 9 31 31 H 1.09004 * 109.46696 * 300.00361 * 12 10 9 32 32 H 1.09001 * 109.47612 * 60.00096 * 16 14 13 33 33 H 1.09001 * 109.47122 * 299.99927 * 16 14 13 34 34 H 1.09001 * 109.47002 * 299.99404 * 17 16 14 35 35 H 1.08993 * 109.46955 * 59.99842 * 17 16 14 36 36 H 1.08010 * 120.05884 * 359.97438 * 21 20 18 37 37 H 1.08004 * 119.88483 * 180.26921 * 22 21 20 38 38 H 1.07997 * 119.93678 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 8 2.1873 -5.9666 0.0027 14 6 1.6743 -7.2069 0.0027 15 8 0.4764 -7.3652 0.0028 16 6 2.5923 -8.4020 0.0038 17 6 1.7589 -9.6852 0.0029 18 6 2.6769 -10.8803 0.0046 19 8 3.8794 -10.7214 0.0059 20 6 2.1158 -12.2371 0.0048 21 6 0.7280 -12.4247 0.0091 22 6 0.2085 -13.6992 0.0029 23 6 1.0555 -14.7992 0.0049 24 9 0.5368 -16.0466 0.0049 25 6 2.4298 -14.6243 0.0063 26 6 2.9665 -13.3516 0.0064 27 9 4.3067 -13.1811 0.0084 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6174 -4.9212 -0.8880 31 1 0.6168 -4.9200 0.8920 32 1 3.2204 -8.3769 0.8942 33 1 3.2217 -8.3774 -0.8858 34 1 1.1292 -9.7101 0.8923 35 1 1.1311 -9.7101 -0.8877 36 1 0.0666 -11.5708 0.0127 37 1 -0.8618 -13.8440 0.0018 38 1 3.0826 -15.4846 0.0075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:00 Heat of formation + Delta-G solvation = -224.838065 kcal Electronic energy + Delta-G solvation = -27187.120958 eV Core-core repulsion = 22438.103528 eV Total energy + Delta-G solvation = -4749.017430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.095 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.71511 -49.51379 -40.68494 -40.10612 -38.64269 -38.14978 -36.23545 -34.01223 -33.53304 -31.90362 -31.38845 -31.26358 -28.67459 -26.60826 -24.67325 -24.23352 -23.35722 -21.04567 -20.10564 -19.59408 -18.87756 -18.11057 -18.01838 -17.73966 -17.01050 -16.85750 -16.60071 -16.35835 -16.13430 -15.96566 -15.62433 -15.50602 -15.09041 -14.87851 -14.71317 -14.37094 -14.25382 -13.92617 -13.70566 -13.32034 -13.08732 -12.89973 -12.52882 -12.42536 -12.26667 -12.14755 -11.88380 -11.63120 -11.55695 -11.15904 -10.49288 -10.44751 -10.39460 -10.30269 -10.23919 -9.83016 -9.62592 -9.44966 -8.53329 -8.09238 -6.51096 -3.93017 -0.24646 0.33007 1.70204 2.24849 2.58308 2.79413 3.10951 3.11283 3.23521 3.30848 3.44428 3.65213 3.72624 3.83051 4.10928 4.13921 4.26018 4.37314 4.61542 4.69906 4.72232 5.04115 5.05344 5.11491 5.13849 5.18289 5.24663 5.31599 5.36656 5.44326 5.52635 5.60854 5.67519 5.98829 6.04192 6.59399 6.99349 7.47251 7.78854 7.94772 8.47544 9.06442 9.38348 9.88316 10.66175 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.036112 B = 0.001560 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.168761 B =17942.045106 C =18691.464228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.553 5.553 10 C 0.437 3.563 11 O -0.575 6.575 12 C 0.061 3.939 13 O -0.324 6.324 14 C 0.461 3.539 15 O -0.519 6.519 16 C -0.106 4.106 17 C -0.152 4.152 18 C 0.396 3.604 19 O -0.432 6.432 20 C -0.216 4.216 21 C -0.012 4.012 22 C -0.177 4.177 23 C 0.163 3.837 24 F -0.125 7.125 25 C -0.209 4.209 26 C 0.190 3.810 27 F -0.107 7.107 28 H 0.273 0.727 29 H 0.395 0.605 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.158 0.842 37 H 0.152 0.848 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.887 -29.719 0.013 29.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.190 5.190 10 C 0.222 3.778 11 O -0.459 6.459 12 C -0.017 4.017 13 O -0.238 6.238 14 C 0.304 3.696 15 O -0.409 6.409 16 C -0.143 4.143 17 C -0.190 4.190 18 C 0.272 3.728 19 O -0.306 6.306 20 C -0.218 4.218 21 C -0.031 4.031 22 C -0.196 4.196 23 C 0.143 3.857 24 F -0.103 7.103 25 C -0.229 4.229 26 C 0.169 3.831 27 F -0.084 7.084 28 H 0.083 0.917 29 H 0.228 0.772 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.176 0.824 37 H 0.170 0.830 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.865 -29.507 0.015 29.566 hybrid contribution -0.434 0.525 0.000 0.682 sum -2.299 -28.982 0.015 29.073 Atomic orbital electron populations 1.69626 1.06000 1.28369 1.49798 1.25312 0.95694 0.99875 0.96897 0.85736 0.79728 0.80720 0.77793 1.19080 1.20624 1.20629 1.19788 0.93536 0.81756 1.48040 0.87542 1.41709 1.09355 1.04102 1.63877 1.19342 0.88361 0.84108 0.85988 1.90573 1.13415 1.86775 1.55128 1.22759 0.90825 0.84613 1.03496 1.86559 1.40353 1.14227 1.82639 1.23599 0.88497 0.85121 0.72371 1.90644 1.16889 1.86974 1.46365 1.21100 0.97539 0.88093 1.07617 1.21834 0.98964 0.91490 1.06677 1.22141 0.89606 0.88748 0.72263 1.90652 1.16990 1.88173 1.34788 1.20712 0.94571 0.94668 1.11878 1.21324 0.92982 0.97703 0.91058 1.21234 1.01373 0.91191 1.05771 1.17620 0.90896 0.79958 0.97214 1.91573 1.87007 1.38713 1.92993 1.21047 0.94826 0.97666 1.09360 1.17511 0.77884 0.92332 0.95340 1.91644 1.28433 1.96078 1.92291 0.91691 0.77174 0.89502 0.89493 0.86748 0.86756 0.86880 0.86870 0.82403 0.83050 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.89 13.05 55.50 0.72 -23.17 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 8 H 0.11 3.07 7.16 -52.48 -0.38 2.69 16 9 N -0.55 -13.87 5.29 -10.96 -0.06 -13.93 16 10 C 0.44 10.47 7.86 -10.98 -0.09 10.38 16 11 O -0.57 -16.01 16.08 -14.11 -0.23 -16.24 16 12 C 0.06 1.12 5.94 36.01 0.21 1.34 16 13 O -0.32 -5.83 9.75 -45.89 -0.45 -6.27 16 14 C 0.46 6.52 7.96 36.00 0.29 6.81 16 15 O -0.52 -7.84 15.73 -18.75 -0.29 -8.14 16 16 C -0.11 -1.09 5.10 -27.88 -0.14 -1.23 16 17 C -0.15 -1.14 3.60 -27.88 -0.10 -1.24 16 18 C 0.40 3.43 7.11 -30.84 -0.22 3.21 16 19 O -0.43 -5.25 14.97 5.54 0.08 -5.16 16 20 C -0.22 -1.54 5.88 -105.01 -0.62 -2.16 16 21 C -0.01 -0.06 9.46 -39.13 -0.37 -0.43 16 22 C -0.18 -0.75 10.00 -39.58 -0.40 -1.14 16 23 C 0.16 0.91 7.31 -39.25 -0.29 0.63 16 24 F -0.12 -0.78 17.26 2.25 0.04 -0.74 16 25 C -0.21 -1.28 9.99 -39.51 -0.39 -1.68 16 26 C 0.19 1.51 7.29 -38.88 -0.28 1.23 16 27 F -0.11 -1.10 15.55 2.25 0.04 -1.06 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 30 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 31 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 32 H 0.11 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.11 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.11 0.69 8.03 -51.93 -0.42 0.27 16 35 H 0.11 0.69 8.05 -51.93 -0.42 0.27 16 36 H 0.16 0.34 7.05 -52.48 -0.37 -0.03 16 37 H 0.15 0.32 8.06 -52.48 -0.42 -0.10 16 38 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -34.40 356.29 -6.01 -40.41 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.57 Total: 5.52 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -2.64 Total: 7.82 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.67 Total: -37.10 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.89 Total: -35.81 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.07 Total: -1.81 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.40 -6.01 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.430 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds