Wall clock time and date at job start Sat Apr 11 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 119.99924 * 2 1 4 4 H 1.48502 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47215 * 299.99513 * 3 2 1 6 6 H 1.48495 * 109.47326 * 59.99858 * 3 2 1 7 7 C 1.38945 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08012 * 119.99670 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00368 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99896 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00215 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99973 * 179.97438 * 10 9 7 13 13 O 1.45197 * 109.47372 * 179.97438 * 12 10 9 14 14 C 1.34225 * 117.00038 * 180.02562 * 13 12 10 15 15 O 1.20825 * 120.00047 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99990 * 180.02562 * 14 13 12 17 17 C 1.53006 * 109.47184 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47184 * 180.02562 * 17 16 14 19 19 O 1.21296 * 119.99939 * 359.97438 * 18 17 16 20 20 C 1.46826 * 120.00232 * 179.97438 * 18 17 16 21 21 C 1.40041 * 120.16791 * 359.72657 * 20 18 17 22 22 C 1.37625 * 119.87550 * 179.69622 * 21 20 18 23 23 C 1.38840 * 120.22464 * 0.59818 * 22 21 20 24 24 F 1.35093 * 119.82632 * 179.69509 * 23 22 21 25 25 C 1.38534 * 120.34233 * 359.67608 * 23 22 21 26 26 C 1.38128 * 120.12071 * 0.02562 * 25 23 22 27 27 F 1.35101 * 120.11436 * 179.97438 * 26 25 23 28 28 H 0.97007 * 119.99652 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99667 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46702 * 59.99515 * 12 10 9 31 31 H 1.09004 * 109.46696 * 300.00361 * 12 10 9 32 32 H 1.09001 * 109.47612 * 60.00096 * 16 14 13 33 33 H 1.09001 * 109.47122 * 299.99927 * 16 14 13 34 34 H 1.09001 * 109.47002 * 299.99404 * 17 16 14 35 35 H 1.08993 * 109.46955 * 59.99842 * 17 16 14 36 36 H 1.08010 * 120.05884 * 359.97438 * 21 20 18 37 37 H 1.08004 * 119.88483 * 180.26921 * 22 21 20 38 38 H 1.07997 * 119.93678 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 8 2.1873 -5.9666 0.0027 14 6 1.6743 -7.2069 0.0027 15 8 0.4764 -7.3652 0.0028 16 6 2.5923 -8.4020 0.0038 17 6 1.7589 -9.6852 0.0029 18 6 2.6769 -10.8803 0.0046 19 8 3.8794 -10.7214 0.0059 20 6 2.1158 -12.2371 0.0048 21 6 0.7280 -12.4247 0.0091 22 6 0.2085 -13.6992 0.0029 23 6 1.0555 -14.7992 0.0049 24 9 0.5368 -16.0466 0.0049 25 6 2.4298 -14.6243 0.0063 26 6 2.9665 -13.3516 0.0064 27 9 4.3067 -13.1811 0.0084 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6174 -4.9212 -0.8880 31 1 0.6168 -4.9200 0.8920 32 1 3.2204 -8.3769 0.8942 33 1 3.2217 -8.3774 -0.8858 34 1 1.1292 -9.7101 0.8923 35 1 1.1311 -9.7101 -0.8877 36 1 0.0666 -11.5708 0.0127 37 1 -0.8618 -13.8440 0.0018 38 1 3.0826 -15.4846 0.0075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:59 Heat of formation + Delta-G solvation = -245.596689 kcal Electronic energy + Delta-G solvation = -27188.021120 eV Core-core repulsion = 22438.103528 eV Total energy + Delta-G solvation = -4749.917592 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.095 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.17467 -50.14935 -41.73717 -40.93225 -40.01655 -39.16950 -37.56605 -36.03251 -34.30319 -33.41269 -32.43153 -31.72376 -30.16782 -27.58744 -26.39506 -24.81867 -23.91976 -22.04722 -21.41841 -20.81761 -20.07060 -19.40118 -19.00272 -18.30246 -17.95786 -17.94067 -17.71371 -17.23151 -16.99159 -16.81433 -16.60189 -16.39589 -16.35071 -15.80515 -15.62354 -15.62051 -15.45058 -15.17108 -14.51179 -14.44450 -14.13574 -13.67044 -13.62797 -13.57722 -13.52323 -13.01354 -12.97564 -12.93934 -12.52799 -12.46492 -12.26004 -12.11166 -11.82326 -11.63319 -11.58172 -10.92064 -10.50706 -10.26102 -10.11277 -9.93469 -8.52560 -6.02938 -0.75091 -0.08959 1.12445 1.13829 1.34915 1.36982 1.45883 1.59430 1.87640 2.29620 2.33396 2.61807 2.78266 3.11517 3.13180 3.19066 3.41011 3.54582 3.78367 3.80183 3.96842 4.03579 4.09656 4.15306 4.19733 4.24593 4.54476 4.61125 4.71300 4.76623 4.81035 4.89242 4.94137 4.95607 5.36058 5.39095 5.57191 5.89634 6.36934 6.46368 6.65666 7.03636 7.40512 7.94675 8.64571 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.036112 B = 0.001560 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.168761 B =17942.045106 C =18691.464228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.998 3.002 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.083 0.917 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.621 6.621 12 C 0.072 3.928 13 O -0.350 6.350 14 C 0.465 3.535 15 O -0.524 6.524 16 C -0.102 4.102 17 C -0.145 4.145 18 C 0.403 3.597 19 O -0.478 6.478 20 C -0.228 4.228 21 C 0.001 3.999 22 C -0.165 4.165 23 C 0.159 3.841 24 F -0.128 7.128 25 C -0.210 4.210 26 C 0.163 3.837 27 F -0.129 7.129 28 H 0.281 0.719 29 H 0.401 0.599 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.189 0.811 37 H 0.180 0.820 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 -30.255 0.014 30.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.821 3.179 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.101 0.899 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.508 6.508 12 C -0.005 4.005 13 O -0.265 6.265 14 C 0.309 3.691 15 O -0.414 6.414 16 C -0.140 4.140 17 C -0.182 4.182 18 C 0.282 3.718 19 O -0.354 6.354 20 C -0.230 4.230 21 C -0.017 4.017 22 C -0.183 4.183 23 C 0.139 3.861 24 F -0.107 7.107 25 C -0.230 4.230 26 C 0.143 3.857 27 F -0.107 7.107 28 H 0.090 0.910 29 H 0.235 0.765 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.206 0.794 37 H 0.198 0.802 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.203 -30.070 0.015 30.362 hybrid contribution 0.199 0.588 0.000 0.621 sum -4.005 -29.481 0.015 29.752 Atomic orbital electron populations 1.69674 1.06866 1.29649 1.49211 1.26098 0.96592 1.02495 0.95661 0.84806 0.78008 0.76663 0.78460 1.19751 1.19413 1.19425 1.19752 0.92918 0.83496 1.50643 0.89940 1.41739 1.09565 1.04165 1.64046 1.20240 0.88109 0.85604 0.84013 1.90537 1.15676 1.87774 1.56783 1.22515 0.90050 0.82335 1.05577 1.86566 1.41060 1.15419 1.83446 1.24198 0.88968 0.84420 0.71515 1.90633 1.17277 1.86765 1.46676 1.21199 0.97370 0.87613 1.07791 1.21886 0.98520 0.89148 1.08668 1.22429 0.89028 0.89735 0.70574 1.90648 1.18805 1.88735 1.37261 1.20732 0.95726 0.93510 1.12992 1.21643 0.91846 0.98875 0.89324 1.21575 1.02604 0.90388 1.03774 1.17779 0.90818 0.80282 0.97232 1.91569 1.86949 1.39114 1.93029 1.21120 0.95514 0.97308 1.09039 1.17816 0.77222 0.93481 0.97190 1.91583 1.30089 1.96255 1.92786 0.90956 0.76475 0.87270 0.87260 0.86606 0.86616 0.84762 0.84760 0.79372 0.80215 0.81949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.93 13.05 21.66 0.28 -47.65 16 2 C -0.01 -0.40 5.50 84.92 0.47 0.07 16 3 Si 1.00 41.88 29.55 68.60 2.03 43.91 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 7 C -0.34 -18.99 9.68 84.04 0.81 -18.17 16 8 H 0.08 4.94 7.16 -2.90 -0.02 4.92 16 9 N -0.56 -28.30 5.29 -306.98 -1.62 -29.92 16 10 C 0.43 20.98 7.86 87.66 0.69 21.67 16 11 O -0.62 -35.54 16.08 15.72 0.25 -35.28 16 12 C 0.07 2.60 5.94 71.24 0.42 3.02 16 13 O -0.35 -12.31 9.75 -45.01 -0.44 -12.74 16 14 C 0.46 12.33 7.96 71.24 0.57 12.90 16 15 O -0.52 -14.36 15.73 21.97 0.35 -14.01 16 16 C -0.10 -1.97 5.10 29.85 0.15 -1.81 16 17 C -0.15 -1.80 3.60 29.85 0.11 -1.69 16 18 C 0.40 6.56 7.11 27.93 0.20 6.76 16 19 O -0.48 -11.82 14.97 -3.08 -0.05 -11.87 16 20 C -0.23 -2.93 5.88 -20.12 -0.12 -3.05 16 21 C 0.00 0.01 9.46 22.56 0.21 0.22 16 22 C -0.16 -0.84 10.00 22.27 0.22 -0.62 16 23 C 0.16 1.48 7.31 22.48 0.16 1.64 16 24 F -0.13 -1.38 17.26 44.97 0.78 -0.61 16 25 C -0.21 -2.46 9.99 22.31 0.22 -2.23 16 26 C 0.16 2.60 7.29 22.72 0.17 2.76 16 27 F -0.13 -2.83 15.55 44.97 0.70 -2.14 16 28 H 0.28 13.68 8.31 -92.70 -0.77 12.91 16 29 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 30 H 0.11 3.44 8.13 -2.39 -0.02 3.42 16 31 H 0.11 3.44 8.13 -2.39 -0.02 3.42 16 32 H 0.12 2.23 8.10 -2.39 -0.02 2.21 16 33 H 0.12 2.23 8.10 -2.39 -0.02 2.21 16 34 H 0.13 1.14 8.03 -2.39 -0.02 1.12 16 35 H 0.13 1.15 8.05 -2.39 -0.02 1.13 16 36 H 0.19 -0.12 7.05 -2.91 -0.02 -0.14 16 37 H 0.18 -0.07 8.06 -2.91 -0.02 -0.09 16 38 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -76.12 356.29 6.98 -69.14 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.41 Total: 19.71 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: 4.29 Total: 21.46 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -1.34 Total: -77.57 kcal Atomic # 8 Polarization: -74.02 SS G_CDS: 0.11 Total: -73.91 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 1.48 Total: -2.74 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -76.12 6.98 -69.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.457 kcal (2) G-P(sol) polarization free energy of solvation -76.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds