Wall clock time and date at job start Sat Apr 11 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48501 * 109.47335 * 269.99974 * 3 2 1 5 5 H 1.48510 * 109.47079 * 29.99792 * 3 2 1 6 6 H 1.48504 * 109.47446 * 149.99401 * 3 2 1 7 7 C 1.37872 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99915 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47016 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00230 * 270.00036 * 10 9 7 12 12 O 1.21284 * 119.99953 * 184.74316 * 11 10 9 13 13 C 1.50700 * 119.99793 * 4.74382 * 11 10 9 14 14 C 1.52996 * 109.46932 * 179.97438 * 13 11 10 15 15 S 1.81400 * 109.47185 * 179.97438 * 14 13 11 16 16 C 1.81404 * 103.00189 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47023 * 179.97438 * 16 15 14 18 18 O 1.20827 * 120.00202 * 0.02562 * 17 16 15 19 19 O 1.34233 * 119.99776 * 179.97438 * 17 16 15 20 20 C 1.40032 * 119.99502 * 90.00370 * 10 9 7 21 21 C 1.38852 * 120.04251 * 247.63593 * 20 10 9 22 22 C 1.38112 * 119.95014 * 179.72617 * 21 20 10 23 23 C 1.38478 * 120.04551 * 0.55174 * 22 21 20 24 24 F 1.35103 * 119.94991 * 179.70308 * 23 22 21 25 25 C 1.38465 * 120.09013 * 359.72749 * 23 22 21 26 26 C 1.38116 * 120.04622 * 359.97438 * 25 23 22 27 27 H 0.97001 * 120.00222 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46889 * 60.00318 * 9 7 2 29 29 H 1.08996 * 109.47225 * 299.99906 * 9 7 2 30 30 H 1.08997 * 109.47275 * 299.99689 * 13 11 10 31 31 H 1.09002 * 109.47233 * 59.99771 * 13 11 10 32 32 H 1.08997 * 109.47166 * 300.00097 * 14 13 11 33 33 H 1.09002 * 109.47069 * 60.00012 * 14 13 11 34 34 H 1.08995 * 109.47009 * 300.00429 * 16 15 14 35 35 H 1.09005 * 109.46694 * 60.00283 * 16 15 14 36 36 H 0.96705 * 116.99908 * 180.02562 * 19 17 16 37 37 H 1.07994 * 120.02241 * 0.02562 * 21 20 10 38 38 H 1.08001 * 119.97634 * 180.25442 * 22 21 20 39 39 H 1.08009 * 119.97786 * 179.97438 * 25 23 22 40 40 H 1.08004 * 120.02003 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6411 -4.1248 -1.1667 12 8 3.3612 -5.1007 -1.1684 13 6 2.2360 -3.4849 -2.4695 14 6 2.8645 -4.2546 -3.6328 15 16 2.3763 -3.4849 -5.2012 16 6 3.2042 -4.5205 -6.4392 17 6 2.8908 -4.0016 -7.8189 18 8 2.1820 -3.0323 -7.9532 19 8 3.3998 -4.6156 -8.8985 20 6 2.6580 -4.1447 1.2133 21 6 3.9861 -3.9876 1.5868 22 6 4.4313 -4.5083 2.7860 23 6 3.5570 -5.1966 3.6103 24 9 3.9961 -5.7103 4.7802 25 6 2.2337 -5.3594 3.2369 26 6 1.7829 -4.8349 2.0414 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8898 29 1 0.6240 -2.5567 0.8903 30 1 1.1502 -3.5072 -2.5631 31 1 2.5812 -2.4512 -2.4895 32 1 3.9502 -4.2320 -3.5390 33 1 2.5196 -5.2885 -3.6130 34 1 4.2814 -4.4913 -6.2756 35 1 2.8506 -5.5476 -6.3488 36 1 3.1711 -4.2461 -9.7624 37 1 4.6691 -3.4544 0.9423 38 1 5.4633 -4.3827 3.0788 39 1 1.5534 -5.8969 3.8811 40 1 0.7506 -4.9625 1.7504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739072592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:06 Heat of formation + Delta-G solvation = -143.935855 kcal Electronic energy + Delta-G solvation = -26173.983714 eV Core-core repulsion = 21994.687644 eV Total energy + Delta-G solvation = -4179.296071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.67215 -40.40146 -40.04262 -38.04754 -36.42524 -35.12864 -32.84178 -32.53358 -30.91530 -30.71784 -29.29503 -27.16961 -24.83337 -23.34930 -22.58217 -22.40365 -21.69894 -18.94027 -18.42050 -17.49598 -17.15967 -16.91740 -16.70625 -16.41955 -16.18204 -15.93838 -15.72604 -15.34423 -15.21443 -14.57220 -14.30951 -13.82765 -13.73691 -13.46704 -13.35777 -13.29652 -12.80412 -12.71053 -12.45884 -12.21651 -12.02382 -11.93895 -11.82258 -11.52971 -11.15759 -11.09499 -10.92071 -10.86263 -10.83048 -10.29822 -9.98291 -9.93354 -9.40782 -8.85974 -8.66705 -8.61987 -7.78720 -7.71708 -6.26982 -4.35241 1.16877 1.38656 1.50092 1.89007 2.40906 2.80171 3.06964 3.20432 3.28130 3.30376 3.62465 3.86176 4.27985 4.49358 4.64244 4.83761 4.94907 4.99648 5.02500 5.05543 5.06338 5.12378 5.24795 5.50538 5.63334 5.72486 5.82833 5.99105 6.11961 6.15277 6.24781 6.33759 6.40840 6.62552 6.71055 6.98265 7.06095 7.43530 7.55188 7.66127 7.90646 7.99855 8.62070 8.76530 9.33319 10.80115 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.008941 B = 0.003148 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.019829 B = 8892.227209 C =11323.445489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.070 3.930 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.237 3.763 10 N -0.559 5.559 11 C 0.530 3.470 12 O -0.560 6.560 13 C -0.118 4.118 14 C -0.082 4.082 15 S -0.176 6.176 16 C -0.109 4.109 17 C 0.496 3.504 18 O -0.490 6.490 19 O -0.515 6.515 20 C 0.168 3.832 21 C -0.079 4.079 22 C -0.144 4.144 23 C 0.080 3.920 24 F -0.147 7.147 25 C -0.144 4.144 26 C -0.096 4.096 27 H 0.267 0.733 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.414 0.586 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.296 -10.199 -7.017 13.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.119 3.881 10 N -0.287 5.287 11 C 0.318 3.682 12 O -0.440 6.440 13 C -0.159 4.159 14 C -0.230 4.230 15 S 0.050 5.950 16 C -0.257 4.257 17 C 0.336 3.664 18 O -0.376 6.376 19 O -0.328 6.328 20 C 0.076 3.924 21 C -0.098 4.098 22 C -0.163 4.163 23 C 0.060 3.940 24 F -0.125 7.125 25 C -0.163 4.163 26 C -0.116 4.116 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.274 0.726 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.744 -9.579 -6.854 12.698 hybrid contribution 1.054 0.232 -0.079 1.082 sum 5.797 -9.347 -6.933 13.002 Atomic orbital electron populations 1.69897 1.06029 1.27597 1.48996 1.24899 0.94848 0.99310 0.94381 0.86513 0.79851 0.82821 0.78476 1.20218 1.20996 1.19751 1.21380 0.93602 0.90162 1.53017 0.91944 1.19653 0.87126 0.82007 0.99294 1.45983 1.45656 1.34810 1.02221 1.20380 0.79569 0.82972 0.85293 1.90644 1.38581 1.26940 1.87853 1.21272 1.03283 1.01935 0.89371 1.23284 1.04424 1.02187 0.93138 1.87685 1.66879 1.41768 0.98678 1.23004 1.06662 1.04648 0.91427 1.22329 0.76776 0.80896 0.86427 1.90805 1.34537 1.25609 1.86613 1.84484 1.70886 1.59219 1.18167 1.17599 0.92382 0.94712 0.87692 1.21098 0.95626 0.97865 0.95257 1.20930 0.99972 1.00483 0.94955 1.17628 0.93364 0.99697 0.83275 1.91456 1.90111 1.85267 1.45710 1.20891 0.94181 1.03209 0.98059 1.21080 1.00395 0.96241 0.93850 0.92309 0.93644 0.94131 0.87777 0.86324 0.89195 0.89330 0.85911 0.85949 0.72614 0.85152 0.84910 0.84825 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.60 13.29 55.43 0.74 -22.87 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -13.32 9.16 -34.44 -0.32 -13.63 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.24 5.24 4.88 -5.19 -0.03 5.21 16 10 N -0.56 -10.96 2.51 -114.71 -0.29 -11.25 16 11 C 0.53 9.88 7.52 -10.98 -0.08 9.80 16 12 O -0.56 -11.22 15.73 5.55 0.09 -11.13 16 13 C -0.12 -1.92 4.37 -27.88 -0.12 -2.04 16 14 C -0.08 -1.11 5.23 37.16 0.19 -0.91 16 15 S -0.18 -2.40 20.88 -107.50 -2.24 -4.64 16 16 C -0.11 -1.04 6.54 36.00 0.24 -0.80 16 17 C 0.50 5.21 8.35 36.00 0.30 5.51 16 18 O -0.49 -7.05 16.62 -18.75 -0.31 -7.36 16 19 O -0.51 -3.76 13.42 -39.26 -0.53 -4.29 16 20 C 0.17 3.12 4.76 -83.66 -0.40 2.72 16 21 C -0.08 -1.37 9.53 -39.40 -0.38 -1.75 16 22 C -0.14 -2.21 10.02 -39.54 -0.40 -2.60 16 23 C 0.08 1.22 7.30 -39.41 -0.29 0.93 16 24 F -0.15 -2.18 17.27 2.25 0.04 -2.14 16 25 C -0.14 -2.12 10.02 -39.54 -0.40 -2.52 16 26 C -0.10 -1.58 9.69 -39.40 -0.38 -1.96 16 27 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.05 1.02 6.47 -51.93 -0.34 0.68 16 29 H 0.04 0.95 7.86 -51.93 -0.41 0.55 16 30 H 0.10 1.67 7.26 -51.93 -0.38 1.29 16 31 H 0.12 2.09 7.91 -51.93 -0.41 1.68 16 32 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.09 1.14 8.10 -51.92 -0.42 0.72 16 34 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.12 0.92 8.14 -51.92 -0.42 0.49 16 36 H 0.41 1.30 9.10 45.56 0.41 1.72 16 37 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -30.81 372.84 -8.10 -38.91 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.04 Total: 4.50 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.15 Total: -0.37 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.45 Total: -34.11 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.75 Total: -22.78 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.24 Total: -4.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.81 -8.10 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739072592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.026 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds