Wall clock time and date at job start Sat Apr 11 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48501 * 109.47335 * 269.99974 * 3 2 1 5 5 H 1.48510 * 109.47079 * 29.99792 * 3 2 1 6 6 H 1.48504 * 109.47446 * 149.99401 * 3 2 1 7 7 C 1.37872 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99915 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47016 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00230 * 270.00036 * 10 9 7 12 12 O 1.21284 * 119.99953 * 184.74316 * 11 10 9 13 13 C 1.50700 * 119.99793 * 4.74382 * 11 10 9 14 14 C 1.52996 * 109.46932 * 179.97438 * 13 11 10 15 15 S 1.81400 * 109.47185 * 179.97438 * 14 13 11 16 16 C 1.81404 * 103.00189 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47023 * 179.97438 * 16 15 14 18 18 O 1.20827 * 120.00202 * 0.02562 * 17 16 15 19 19 O 1.34233 * 119.99776 * 179.97438 * 17 16 15 20 20 C 1.40032 * 119.99502 * 90.00370 * 10 9 7 21 21 C 1.38852 * 120.04251 * 247.63593 * 20 10 9 22 22 C 1.38112 * 119.95014 * 179.72617 * 21 20 10 23 23 C 1.38478 * 120.04551 * 0.55174 * 22 21 20 24 24 F 1.35103 * 119.94991 * 179.70308 * 23 22 21 25 25 C 1.38465 * 120.09013 * 359.72749 * 23 22 21 26 26 C 1.38116 * 120.04622 * 359.97438 * 25 23 22 27 27 H 0.97001 * 120.00222 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46889 * 60.00318 * 9 7 2 29 29 H 1.08996 * 109.47225 * 299.99906 * 9 7 2 30 30 H 1.08997 * 109.47275 * 299.99689 * 13 11 10 31 31 H 1.09002 * 109.47233 * 59.99771 * 13 11 10 32 32 H 1.08997 * 109.47166 * 300.00097 * 14 13 11 33 33 H 1.09002 * 109.47069 * 60.00012 * 14 13 11 34 34 H 1.08995 * 109.47009 * 300.00429 * 16 15 14 35 35 H 1.09005 * 109.46694 * 60.00283 * 16 15 14 36 36 H 0.96705 * 116.99908 * 180.02562 * 19 17 16 37 37 H 1.07994 * 120.02241 * 0.02562 * 21 20 10 38 38 H 1.08001 * 119.97634 * 180.25442 * 22 21 20 39 39 H 1.08009 * 119.97786 * 179.97438 * 25 23 22 40 40 H 1.08004 * 120.02003 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6411 -4.1248 -1.1667 12 8 3.3612 -5.1007 -1.1684 13 6 2.2360 -3.4849 -2.4695 14 6 2.8645 -4.2546 -3.6328 15 16 2.3763 -3.4849 -5.2012 16 6 3.2042 -4.5205 -6.4392 17 6 2.8908 -4.0016 -7.8189 18 8 2.1820 -3.0323 -7.9532 19 8 3.3998 -4.6156 -8.8985 20 6 2.6580 -4.1447 1.2133 21 6 3.9861 -3.9876 1.5868 22 6 4.4313 -4.5083 2.7860 23 6 3.5570 -5.1966 3.6103 24 9 3.9961 -5.7103 4.7802 25 6 2.2337 -5.3594 3.2369 26 6 1.7829 -4.8349 2.0414 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8898 29 1 0.6240 -2.5567 0.8903 30 1 1.1502 -3.5072 -2.5631 31 1 2.5812 -2.4512 -2.4895 32 1 3.9502 -4.2320 -3.5390 33 1 2.5196 -5.2885 -3.6130 34 1 4.2814 -4.4913 -6.2756 35 1 2.8506 -5.5476 -6.3488 36 1 3.1711 -4.2461 -9.7624 37 1 4.6691 -3.4544 0.9423 38 1 5.4633 -4.3827 3.0788 39 1 1.5534 -5.8969 3.8811 40 1 0.7506 -4.9625 1.7504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739072592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:05 Heat of formation + Delta-G solvation = -160.781713 kcal Electronic energy + Delta-G solvation = -26174.714206 eV Core-core repulsion = 21994.687644 eV Total energy + Delta-G solvation = -4180.026562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.87201 -41.49020 -41.20351 -39.38666 -37.18218 -36.71377 -34.59420 -33.92301 -32.16239 -31.51173 -30.70565 -28.91319 -26.11281 -25.04746 -23.93754 -23.38818 -22.79023 -20.34781 -19.19883 -18.81438 -18.68928 -18.41766 -17.74111 -17.62237 -17.34704 -17.21072 -16.77968 -16.54904 -16.54315 -16.26836 -15.60086 -15.08093 -15.04542 -14.54075 -14.35181 -14.24771 -14.22453 -13.98580 -13.89133 -13.62323 -13.40857 -13.31527 -13.07566 -12.84572 -12.64286 -12.61260 -12.36103 -12.16866 -12.11560 -11.80126 -11.73842 -10.99703 -10.92098 -10.58550 -10.11589 -10.10037 -9.24231 -8.77584 -8.21374 -6.34898 0.07177 0.24710 0.25341 1.09370 1.42084 1.42588 1.44627 1.51831 1.59870 2.07186 2.17117 2.42036 2.57768 3.10994 3.25819 3.75995 3.77923 3.83182 3.91343 3.95945 3.98724 4.17984 4.24702 4.31572 4.40228 4.45180 4.54594 4.73428 4.89777 4.91865 5.01124 5.09151 5.13892 5.15632 5.43271 5.52712 5.62084 5.71173 5.99749 6.02077 6.40832 6.75368 6.89726 7.18775 7.37496 8.84473 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.008941 B = 0.003148 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.019829 B = 8892.227209 C =11323.445489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.254 3.746 10 N -0.561 5.561 11 C 0.528 3.472 12 O -0.573 6.573 13 C -0.112 4.112 14 C -0.062 4.062 15 S -0.232 6.232 16 C -0.096 4.096 17 C 0.503 3.497 18 O -0.537 6.537 19 O -0.502 6.502 20 C 0.133 3.867 21 C -0.095 4.095 22 C -0.139 4.139 23 C 0.079 3.921 24 F -0.141 7.141 25 C -0.135 4.135 26 C -0.104 4.104 27 H 0.268 0.732 28 H 0.040 0.960 29 H 0.024 0.976 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.434 0.566 37 H 0.124 0.876 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.501 -11.370 -7.025 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.583 4.583 8 H 0.074 0.926 9 C 0.134 3.866 10 N -0.288 5.288 11 C 0.318 3.682 12 O -0.454 6.454 13 C -0.153 4.153 14 C -0.211 4.211 15 S -0.006 6.006 16 C -0.244 4.244 17 C 0.345 3.655 18 O -0.426 6.426 19 O -0.316 6.316 20 C 0.042 3.958 21 C -0.114 4.114 22 C -0.158 4.158 23 C 0.060 3.940 24 F -0.120 7.120 25 C -0.154 4.154 26 C -0.124 4.124 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.296 0.704 37 H 0.142 0.858 38 H 0.176 0.824 39 H 0.182 0.818 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.975 -10.777 -6.875 14.111 hybrid contribution 0.737 0.487 -0.097 0.888 sum 6.712 -10.290 -6.971 14.126 Atomic orbital electron populations 1.69981 1.07130 1.28200 1.50272 1.25547 0.95476 1.02037 0.94339 0.85672 0.78765 0.79598 0.78416 1.19953 1.20860 1.19486 1.21595 0.93400 0.91293 1.52047 0.92589 1.19260 0.87087 0.82149 0.98078 1.45869 1.45367 1.34292 1.03231 1.20713 0.79134 0.82733 0.85666 1.90619 1.39165 1.27528 1.88053 1.21199 1.03358 1.01221 0.89497 1.23071 1.04241 1.01908 0.91865 1.87891 1.68228 1.43948 1.00538 1.23043 1.07513 1.04535 0.89323 1.22436 0.75740 0.80027 0.87298 1.90801 1.36802 1.27744 1.87295 1.84442 1.69971 1.58528 1.18692 1.17974 0.93484 0.96376 0.87968 1.21135 0.95256 0.98791 0.96237 1.21149 1.01277 0.99447 0.93942 1.17729 0.93596 0.99380 0.83326 1.91475 1.90069 1.85111 1.45332 1.21182 0.94530 1.02181 0.97483 1.21234 1.00595 0.96274 0.94258 0.92314 0.94206 0.95749 0.87905 0.87947 0.88777 0.88361 0.83451 0.83262 0.70366 0.85785 0.82422 0.81800 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.43 13.29 21.44 0.28 -49.14 16 2 C 0.03 1.38 5.46 84.65 0.46 1.84 16 3 Si 0.95 41.26 29.54 68.60 2.03 43.29 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -27.16 9.16 25.60 0.23 -26.92 16 8 H 0.06 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.25 11.49 4.88 85.63 0.42 11.91 16 10 N -0.56 -22.35 2.51 -635.23 -1.59 -23.95 16 11 C 0.53 19.94 7.52 87.66 0.66 20.60 16 12 O -0.57 -22.84 15.73 -3.04 -0.05 -22.89 16 13 C -0.11 -3.72 4.37 29.85 0.13 -3.59 16 14 C -0.06 -1.65 5.23 71.98 0.38 -1.28 16 15 S -0.23 -6.24 20.88 -56.49 -1.18 -7.42 16 16 C -0.10 -1.63 6.54 71.23 0.47 -1.16 16 17 C 0.50 9.76 8.35 71.23 0.59 10.36 16 18 O -0.54 -15.28 16.62 21.96 0.37 -14.92 16 19 O -0.50 -6.07 13.42 -51.44 -0.69 -6.76 16 20 C 0.13 4.96 4.76 38.12 0.18 5.14 16 21 C -0.09 -3.27 9.53 22.39 0.21 -3.06 16 22 C -0.14 -4.05 10.02 22.30 0.22 -3.82 16 23 C 0.08 2.25 7.30 22.38 0.16 2.41 16 24 F -0.14 -3.82 17.27 44.97 0.78 -3.05 16 25 C -0.13 -3.70 10.02 22.29 0.22 -3.48 16 26 C -0.10 -3.35 9.69 22.39 0.22 -3.14 16 27 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 28 H 0.04 1.84 6.47 -2.38 -0.02 1.83 16 29 H 0.02 1.18 7.86 -2.39 -0.02 1.16 16 30 H 0.10 3.41 7.26 -2.39 -0.02 3.39 16 31 H 0.10 3.74 7.91 -2.39 -0.02 3.72 16 32 H 0.09 2.40 8.10 -2.39 -0.02 2.39 16 33 H 0.10 2.41 8.10 -2.39 -0.02 2.39 16 34 H 0.15 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.43 1.72 9.10 -74.05 -0.67 1.05 16 37 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 39 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -66.36 372.84 4.92 -61.44 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.41 Total: 17.58 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 4.56 Total: 5.81 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -1.31 Total: -73.09 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.37 Total: -44.57 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.78 Total: -3.05 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: -6.24 SS G_CDS: -1.18 Total: -7.42 kcal Total: -66.36 4.92 -61.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739072592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.341 kcal (2) G-P(sol) polarization free energy of solvation -66.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds