Wall clock time and date at job start Sat Apr 11 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86793 * 120.00276 * 2 1 4 4 H 1.48505 * 109.47032 * 275.40626 * 3 2 1 5 5 H 1.48507 * 109.47327 * 35.40196 * 3 2 1 6 6 H 1.48495 * 109.47532 * 155.40359 * 3 2 1 7 7 C 1.38951 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99998 * 339.97408 * 7 2 1 9 9 N 1.37102 * 119.99955 * 159.97759 * 7 2 1 10 10 C 1.46496 * 119.99615 * 323.41301 * 9 7 2 11 11 C 1.50701 * 109.47259 * 270.00286 * 10 9 7 12 12 O 1.20822 * 120.00079 * 359.97438 * 11 10 9 13 13 O 1.34228 * 119.99681 * 180.02562 * 11 10 9 14 14 C 1.34775 * 120.00168 * 143.41697 * 9 7 2 15 15 O 1.21290 * 120.00075 * 174.66174 * 14 9 7 16 16 C 1.50699 * 120.00071 * 354.66539 * 14 9 7 17 17 C 1.52999 * 109.47406 * 185.51868 * 16 14 9 18 18 C 1.50696 * 109.47190 * 176.64171 * 17 16 14 19 19 O 1.21292 * 120.00331 * 5.41936 * 18 17 16 20 20 C 1.46831 * 119.99964 * 185.41865 * 18 17 16 21 21 C 1.40044 * 120.16499 * 359.72684 * 20 18 17 22 22 C 1.37637 * 119.87014 * 179.69811 * 21 20 18 23 23 C 1.38834 * 120.22479 * 0.59268 * 22 21 20 24 24 F 1.35104 * 119.82896 * 179.69480 * 23 22 21 25 25 C 1.38536 * 120.34464 * 359.68128 * 23 22 21 26 26 C 1.38136 * 120.12012 * 0.02562 * 25 23 22 27 27 F 1.35099 * 120.11126 * 179.97438 * 26 25 23 28 28 H 0.96998 * 119.99717 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47332 * 30.00900 * 10 9 7 30 30 H 1.09004 * 109.46941 * 150.00326 * 10 9 7 31 31 H 0.96705 * 116.99425 * 180.02562 * 13 11 10 32 32 H 1.09002 * 109.47513 * 65.51387 * 16 14 9 33 33 H 1.09004 * 109.46999 * 305.52103 * 16 14 9 34 34 H 1.09007 * 109.46780 * 296.63817 * 17 16 14 35 35 H 1.08990 * 109.47195 * 56.63559 * 17 16 14 36 36 H 1.07998 * 120.06551 * 359.97438 * 21 20 18 37 37 H 1.07994 * 119.88285 * 180.27535 * 22 21 20 38 38 H 1.07999 * 119.94212 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.3814 2.1123 -1.3939 5 1 1.5074 2.6170 0.8111 6 1 3.5981 1.4098 0.5827 7 6 2.0088 -1.2034 0.0005 8 1 1.5177 -2.1103 0.3212 9 7 3.3177 -1.2395 -0.4060 10 6 3.7660 -0.3853 -1.5084 11 6 3.6035 -1.1221 -2.8130 12 8 3.1593 -2.2457 -2.8209 13 8 3.9533 -0.5305 -3.9659 14 6 4.1918 -2.0609 0.2086 15 8 5.3247 -2.1651 -0.2120 16 6 3.7617 -2.8499 1.4183 17 6 4.9681 -3.5891 2.0006 18 6 4.5560 -4.3116 3.2571 19 8 3.3913 -4.3240 3.5954 20 6 5.5644 -5.0008 4.0720 21 6 6.9094 -4.9936 3.6817 22 6 7.8506 -5.6362 4.4535 23 6 7.4693 -6.3017 5.6107 24 9 8.3989 -6.9351 6.3589 25 6 6.1406 -6.3195 6.0023 26 6 5.1850 -5.6742 5.2417 27 9 3.8892 -5.6920 5.6235 28 1 -0.4849 0.8401 -0.0004 29 1 3.1679 0.5257 -1.5287 30 1 4.8154 -0.1277 -1.3649 31 1 3.8305 -1.0426 -4.7770 32 1 2.9983 -3.5720 1.1286 33 1 3.3543 -2.1718 2.1683 34 1 5.3388 -4.3100 1.2718 35 1 5.7549 -2.8722 2.2350 36 1 7.2081 -4.4810 2.7793 37 1 8.8884 -5.6270 4.1550 38 1 5.8512 -6.8389 6.9039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:09 Heat of formation + Delta-G solvation = -210.016884 kcal Electronic energy + Delta-G solvation = -28835.835815 eV Core-core repulsion = 24087.461080 eV Total energy + Delta-G solvation = -4748.374735 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.095 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.46679 -49.19726 -40.10267 -39.79187 -38.64396 -38.10772 -35.65150 -34.94892 -32.77984 -32.09031 -31.43500 -30.93000 -28.56051 -25.83163 -24.80684 -23.85877 -22.90837 -21.45779 -19.90471 -19.08494 -18.57607 -17.66131 -17.50577 -17.43701 -16.97058 -16.39783 -16.28073 -15.98733 -15.81223 -15.69815 -15.35642 -15.26923 -14.97455 -14.79329 -14.65992 -14.27673 -13.97417 -13.59992 -13.31530 -12.88205 -12.79922 -12.74876 -12.43262 -12.27237 -12.03793 -11.90498 -11.83394 -11.35679 -11.06024 -11.00968 -10.66788 -10.53562 -10.15570 -9.97181 -9.68001 -9.53296 -9.38256 -9.13559 -8.82828 -8.08807 -6.59048 -4.21555 0.09963 0.62242 2.13994 2.82388 2.90781 3.08876 3.13212 3.15189 3.25873 3.39324 3.64309 3.83192 3.95679 3.96744 4.14457 4.33041 4.41420 4.69353 4.85203 4.96434 5.26169 5.34163 5.46298 5.48904 5.50652 5.57069 5.64042 5.67915 5.76327 5.87324 5.96253 6.16410 6.29057 6.40046 6.59000 6.98848 7.06475 7.52525 7.90870 8.14130 8.48250 8.77636 9.12876 9.43827 10.51485 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.002714 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.353965 B =10315.169250 C =11207.041251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.065 3.935 3 Si 0.865 3.135 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.342 4.342 8 H 0.111 0.889 9 N -0.447 5.447 10 C 0.107 3.893 11 C 0.465 3.535 12 O -0.496 6.496 13 O -0.528 6.528 14 C 0.492 3.508 15 O -0.597 6.597 16 C -0.108 4.108 17 C -0.146 4.146 18 C 0.390 3.610 19 O -0.430 6.430 20 C -0.210 4.210 21 C -0.013 4.013 22 C -0.178 4.178 23 C 0.156 3.844 24 F -0.128 7.128 25 C -0.210 4.210 26 C 0.186 3.814 27 F -0.107 7.107 28 H 0.278 0.722 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.399 0.601 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.124 -6.914 7.024 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.144 4.144 3 Si 0.692 3.308 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.469 4.469 8 H 0.129 0.871 9 N -0.168 5.168 10 C -0.018 4.018 11 C 0.305 3.695 12 O -0.381 6.381 13 O -0.339 6.339 14 C 0.284 3.716 15 O -0.483 6.483 16 C -0.147 4.147 17 C -0.183 4.183 18 C 0.266 3.734 19 O -0.303 6.303 20 C -0.212 4.212 21 C -0.031 4.031 22 C -0.197 4.197 23 C 0.137 3.863 24 F -0.106 7.106 25 C -0.230 4.230 26 C 0.166 3.834 27 F -0.085 7.085 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.257 0.743 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.177 0.823 37 H 0.167 0.833 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 13.734 -6.985 7.423 17.103 hybrid contribution 0.003 0.405 -0.397 0.567 sum 13.737 -6.580 7.026 16.774 Atomic orbital electron populations 1.69743 1.06210 1.28369 1.44021 1.25388 0.95221 0.98479 0.95294 0.87114 0.81481 0.83804 0.78390 1.19693 1.20664 1.18015 1.19167 0.84509 0.96840 1.46375 0.87148 1.43429 1.10171 1.37912 1.25267 1.21348 1.03190 0.94446 0.82798 1.24425 0.73531 0.85872 0.85719 1.90666 1.40561 1.19767 1.87132 1.84572 1.80202 1.51427 1.17727 1.20384 0.84152 0.82056 0.85057 1.90537 1.20574 1.68730 1.68433 1.21134 0.97282 0.99702 0.96601 1.21784 1.00696 1.00863 0.95007 1.22414 0.87485 0.77525 0.85992 1.90633 1.19988 1.51026 1.68680 1.20923 0.96810 1.05687 0.97773 1.21361 0.89958 0.93441 0.98357 1.21202 1.02007 1.01448 0.94993 1.17587 0.85409 0.93174 0.90170 1.91555 1.64447 1.79352 1.75255 1.21007 0.91522 1.06524 1.03903 1.17548 0.78934 0.94674 0.92282 1.91637 1.32954 1.93757 1.90144 0.91182 0.87993 0.86989 0.74277 0.88725 0.88238 0.87607 0.87847 0.82345 0.83267 0.82910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.06 13.96 55.50 0.77 -22.29 16 2 C 0.06 1.66 5.35 -17.47 -0.09 1.56 16 3 Si 0.87 18.89 24.83 -169.99 -4.22 14.67 16 4 H -0.27 -5.61 6.71 56.52 0.38 -5.23 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.34 -8.79 9.02 -14.93 -0.13 -8.92 16 8 H 0.11 3.04 7.37 -52.48 -0.39 2.65 16 9 N -0.45 -10.50 1.69 -116.09 -0.20 -10.70 16 10 C 0.11 2.30 4.75 -5.20 -0.02 2.28 16 11 C 0.46 9.77 8.40 36.01 0.30 10.07 16 12 O -0.50 -11.99 17.19 -18.75 -0.32 -12.31 16 13 O -0.53 -8.64 13.42 -39.25 -0.53 -9.16 16 14 C 0.49 10.79 7.61 -10.99 -0.08 10.71 16 15 O -0.60 -13.43 15.63 5.55 0.09 -13.34 16 16 C -0.11 -2.02 3.70 -27.88 -0.10 -2.12 16 17 C -0.15 -2.09 3.68 -27.89 -0.10 -2.20 16 18 C 0.39 5.58 7.10 -30.84 -0.22 5.36 16 19 O -0.43 -7.72 14.98 5.55 0.08 -7.63 16 20 C -0.21 -2.41 5.88 -105.01 -0.62 -3.03 16 21 C -0.01 -0.11 9.45 -39.12 -0.37 -0.48 16 22 C -0.18 -1.32 10.00 -39.58 -0.40 -1.71 16 23 C 0.16 1.33 7.31 -39.25 -0.29 1.04 16 24 F -0.13 -1.11 17.26 2.25 0.04 -1.07 16 25 C -0.21 -1.93 9.99 -39.51 -0.39 -2.33 16 26 C 0.19 2.17 7.29 -38.88 -0.28 1.89 16 27 F -0.11 -1.50 15.55 2.25 0.04 -1.47 16 28 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.10 2.18 2.96 -51.93 -0.15 2.03 16 30 H 0.11 2.18 7.50 -51.93 -0.39 1.79 16 31 H 0.40 4.57 9.10 45.56 0.41 4.98 16 32 H 0.09 1.86 7.78 -51.93 -0.40 1.45 16 33 H 0.10 1.91 7.97 -51.93 -0.41 1.50 16 34 H 0.11 1.41 8.12 -51.92 -0.42 0.99 16 35 H 0.10 1.32 7.81 -51.93 -0.41 0.92 16 36 H 0.16 1.04 6.96 -52.49 -0.37 0.68 16 37 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 344.93 15.07 5.20 5.20 Total: -1.00 -32.89 344.93 -4.38 -37.28 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -2.53 Total: 8.69 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -2.81 Total: 12.13 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.58 Total: -32.98 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -0.68 Total: -42.44 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.07 Total: -2.54 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.22 Total: 14.67 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.89 -4.38 -37.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.739 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds