Wall clock time and date at job start Sat Apr 11 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86795 * 120.00384 * 2 1 4 4 H 1.48499 * 109.47363 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47235 * 300.00023 * 3 2 1 6 6 H 1.48498 * 109.47329 * 59.99984 * 3 2 1 7 7 C 1.38805 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99883 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99836 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47146 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99882 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00143 * 180.02562 * 11 10 9 14 14 C 1.46511 * 119.99941 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46804 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.46886 * 55.00146 * 15 14 13 17 17 C 1.53004 * 109.46738 * 174.99697 * 15 14 13 18 18 C 1.50700 * 109.47045 * 185.97516 * 17 15 14 19 19 C 1.38271 * 119.98528 * 264.33796 * 18 17 15 20 20 C 1.38226 * 120.04829 * 179.74741 * 19 18 17 21 21 C 1.38221 * 120.02417 * 0.24762 * 20 19 18 22 22 C 1.38436 * 119.97745 * 0.02562 * 21 20 19 23 23 F 1.35096 * 120.02576 * 179.97438 * 22 21 20 24 24 C 1.38174 * 119.98957 * 84.58929 * 18 17 15 25 25 C 1.50692 * 109.47397 * 294.99998 * 15 14 13 26 26 O 1.20827 * 120.00115 * 278.23694 * 25 15 14 27 27 O 1.34234 * 120.00011 * 98.23241 * 25 15 14 28 28 H 0.96998 * 119.99415 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47232 * 60.00345 * 10 9 7 30 30 H 1.09004 * 109.47320 * 300.00276 * 10 9 7 31 31 H 0.96997 * 120.00199 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.46777 * 60.00225 * 14 13 11 33 33 H 1.08998 * 109.46897 * 299.99650 * 14 13 11 34 34 H 1.09002 * 109.46503 * 65.97954 * 17 15 14 35 35 H 1.08994 * 109.47359 * 305.97608 * 17 15 14 36 36 H 1.08000 * 119.97578 * 0.02562 * 19 18 17 37 37 H 1.07996 * 119.98640 * 180.27432 * 20 19 18 38 38 H 1.07998 * 120.00911 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.01282 * 359.97438 * 24 18 17 40 40 H 0.96700 * 116.99667 * 179.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8918 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3027 -0.0012 12 8 0.7908 -5.5022 -0.0021 13 7 2.8438 -6.3432 -0.0008 14 6 2.3299 -7.7152 -0.0019 15 6 3.5020 -8.6987 -0.0018 16 1 4.1586 -8.4813 0.8405 17 6 2.9688 -10.1274 0.1227 18 6 4.1241 -11.0837 0.2705 19 6 4.6286 -11.7348 -0.8402 20 6 5.6916 -12.6082 -0.7070 21 6 6.2482 -12.8355 0.5376 22 6 5.7403 -12.1885 1.6511 23 9 6.2832 -12.4103 2.8681 24 6 4.6755 -11.3134 1.5164 25 6 4.2736 -8.5609 -1.2888 26 8 3.8852 -9.1173 -2.2886 27 8 5.3923 -7.8199 -1.3246 28 1 -0.4849 0.8401 -0.0004 29 1 3.1242 -3.7315 0.8895 30 1 3.1243 -3.7315 -0.8905 31 1 3.8006 -6.1837 0.0003 32 1 1.7223 -7.8748 -0.8927 33 1 1.7204 -7.8756 0.8873 34 1 2.3987 -10.3816 -0.7709 35 1 2.3234 -10.1994 0.9981 36 1 4.1946 -11.5574 -1.8131 37 1 6.0877 -13.1128 -1.5758 38 1 7.0785 -13.5183 0.6415 39 1 4.2790 -10.8075 2.3843 40 1 5.8532 -7.7615 -2.1727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739091725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:12 Heat of formation + Delta-G solvation = -161.988910 kcal Electronic energy + Delta-G solvation = -25901.965683 eV Core-core repulsion = 21721.886773 eV Total energy + Delta-G solvation = -4180.078910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.28107 -41.05002 -39.46101 -39.15162 -36.62998 -35.84426 -33.76656 -32.44334 -31.28543 -30.87269 -29.17868 -26.31605 -25.51043 -24.76450 -23.21154 -22.25616 -20.69676 -20.35356 -18.63562 -17.93446 -17.73306 -17.30685 -16.65433 -16.57737 -16.50354 -16.17028 -15.97517 -15.50482 -15.16795 -14.81864 -14.53453 -14.13210 -14.03580 -13.86078 -13.70569 -13.54409 -13.16698 -12.95175 -12.61439 -12.45815 -12.37856 -12.24586 -11.95030 -11.77804 -11.62483 -11.38725 -11.08211 -11.03657 -10.80466 -10.76792 -9.82840 -9.54941 -9.42435 -9.12250 -9.10556 -9.03498 -8.25756 -6.52110 -6.23426 -3.94072 0.65704 0.72998 1.84714 2.61976 2.90039 3.01845 3.10163 3.20643 3.26659 3.31004 3.60932 3.76672 4.04819 4.18660 4.27535 4.39189 4.43171 4.56441 4.66267 4.75998 4.87127 4.94717 5.08056 5.10635 5.11978 5.28411 5.40808 5.46892 5.53363 5.61872 5.64688 5.69808 5.85438 5.85795 6.03141 6.11017 6.17223 6.42398 6.44400 7.52886 7.57911 7.59471 8.33960 8.51167 9.22146 10.84060 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.022912 B = 0.001926 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.747712 B =14533.637864 C =14639.135919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.744 5.744 14 C 0.130 3.870 15 C -0.087 4.087 16 H 0.112 0.888 17 C -0.071 4.071 18 C -0.064 4.064 19 C -0.120 4.120 20 C -0.090 4.090 21 C -0.155 4.155 22 C 0.098 3.902 23 F -0.140 7.140 24 C -0.146 4.146 25 C 0.486 3.514 26 O -0.507 6.507 27 O -0.514 6.514 28 H 0.268 0.732 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.402 0.598 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.034 -26.261 0.174 29.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.388 6.388 13 N -0.400 5.400 14 C 0.006 3.994 15 C -0.107 4.107 16 H 0.131 0.869 17 C -0.108 4.108 18 C -0.064 4.064 19 C -0.138 4.138 20 C -0.108 4.108 21 C -0.174 4.174 22 C 0.079 3.921 23 F -0.118 7.118 24 C -0.165 4.165 25 C 0.328 3.672 26 O -0.394 6.394 27 O -0.326 6.326 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.236 0.764 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 11.561 -26.673 0.319 29.072 hybrid contribution 2.987 1.301 -0.347 3.276 sum 14.547 -25.372 -0.028 29.247 Atomic orbital electron populations 1.70029 1.05948 1.27367 1.46909 1.25005 0.95046 0.99071 0.94539 0.86104 0.79573 0.81838 0.77904 1.19615 1.20575 1.20555 1.22905 0.94945 0.91583 1.58871 0.90840 1.85404 1.04834 0.96376 1.96724 1.23530 1.06661 0.95142 1.05058 1.20327 0.86444 0.86249 0.74961 1.90715 1.15283 1.85572 1.47210 1.46081 1.10364 1.05102 1.78496 1.21258 0.93643 0.80112 1.04414 1.21334 0.97238 0.97375 0.94741 0.86940 1.20582 0.95495 0.89003 1.05729 1.19670 0.96895 0.97366 0.92472 1.21362 0.96800 0.96548 0.99138 1.21052 0.95592 0.97418 0.96776 1.21202 1.02155 1.01974 0.92071 1.17684 0.95084 0.98878 0.80457 1.91515 1.84893 1.93560 1.41843 1.21084 0.96883 0.99787 0.98770 1.23232 0.78603 0.74560 0.90841 1.90706 1.67504 1.44803 1.36385 1.84530 1.38535 1.66449 1.43097 0.92222 0.89046 0.89177 0.76354 0.90296 0.89241 0.88297 0.88064 0.84629 0.84908 0.84770 0.84342 0.72861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -15.09 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.02 6.15 36.00 0.22 -2.80 16 11 C 0.53 9.60 7.85 -10.99 -0.09 9.52 16 12 O -0.51 -11.28 15.86 5.55 0.09 -11.19 16 13 N -0.74 -9.32 5.35 -60.29 -0.32 -9.64 16 14 C 0.13 1.33 5.05 -4.03 -0.02 1.31 16 15 C -0.09 -0.65 2.31 -91.77 -0.21 -0.87 16 16 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 17 C -0.07 -0.45 4.63 -27.88 -0.13 -0.58 16 18 C -0.06 -0.45 4.75 -104.63 -0.50 -0.95 16 19 C -0.12 -0.88 8.90 -39.57 -0.35 -1.23 16 20 C -0.09 -0.58 10.04 -39.59 -0.40 -0.98 16 21 C -0.16 -1.07 10.03 -39.51 -0.40 -1.47 16 22 C 0.10 0.80 7.30 -39.42 -0.29 0.51 16 23 F -0.14 -1.28 17.27 2.25 0.04 -1.24 16 24 C -0.15 -1.06 9.70 -39.52 -0.38 -1.45 16 25 C 0.49 4.36 6.01 36.00 0.22 4.58 16 26 O -0.51 -5.71 15.83 -18.75 -0.30 -6.01 16 27 O -0.51 -3.72 13.13 -39.27 -0.52 -4.24 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 30 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 31 H 0.40 4.11 7.96 -40.82 -0.32 3.79 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.68 7.57 -51.93 -0.39 0.29 16 35 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.14 1.02 7.27 -52.49 -0.38 0.63 16 37 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.41 1.56 9.10 45.56 0.41 1.98 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -36.50 370.84 -8.08 -44.58 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.03 Total: 2.25 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.13 Total: -7.25 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.41 Total: -34.91 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.72 Total: -21.44 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.50 -8.08 -44.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739091725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.410 kcal (2) G-P(sol) polarization free energy of solvation -36.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds