Wall clock time and date at job start Sat Apr 11 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86795 * 120.00384 * 2 1 4 4 H 1.48499 * 109.47363 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47235 * 300.00023 * 3 2 1 6 6 H 1.48498 * 109.47329 * 59.99984 * 3 2 1 7 7 C 1.38805 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99883 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99836 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47146 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99882 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00143 * 180.02562 * 11 10 9 14 14 C 1.46511 * 119.99941 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46804 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.46886 * 55.00146 * 15 14 13 17 17 C 1.53004 * 109.46738 * 174.99697 * 15 14 13 18 18 C 1.50700 * 109.47045 * 185.97516 * 17 15 14 19 19 C 1.38271 * 119.98528 * 264.33796 * 18 17 15 20 20 C 1.38226 * 120.04829 * 179.74741 * 19 18 17 21 21 C 1.38221 * 120.02417 * 0.24762 * 20 19 18 22 22 C 1.38436 * 119.97745 * 0.02562 * 21 20 19 23 23 F 1.35096 * 120.02576 * 179.97438 * 22 21 20 24 24 C 1.38174 * 119.98957 * 84.58929 * 18 17 15 25 25 C 1.50692 * 109.47397 * 294.99998 * 15 14 13 26 26 O 1.20827 * 120.00115 * 278.23694 * 25 15 14 27 27 O 1.34234 * 120.00011 * 98.23241 * 25 15 14 28 28 H 0.96998 * 119.99415 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47232 * 60.00345 * 10 9 7 30 30 H 1.09004 * 109.47320 * 300.00276 * 10 9 7 31 31 H 0.96997 * 120.00199 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.46777 * 60.00225 * 14 13 11 33 33 H 1.08998 * 109.46897 * 299.99650 * 14 13 11 34 34 H 1.09002 * 109.46503 * 65.97954 * 17 15 14 35 35 H 1.08994 * 109.47359 * 305.97608 * 17 15 14 36 36 H 1.08000 * 119.97578 * 0.02562 * 19 18 17 37 37 H 1.07996 * 119.98640 * 180.27432 * 20 19 18 38 38 H 1.07998 * 120.00911 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.01282 * 359.97438 * 24 18 17 40 40 H 0.96700 * 116.99667 * 179.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8918 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3027 -0.0012 12 8 0.7908 -5.5022 -0.0021 13 7 2.8438 -6.3432 -0.0008 14 6 2.3299 -7.7152 -0.0019 15 6 3.5020 -8.6987 -0.0018 16 1 4.1586 -8.4813 0.8405 17 6 2.9688 -10.1274 0.1227 18 6 4.1241 -11.0837 0.2705 19 6 4.6286 -11.7348 -0.8402 20 6 5.6916 -12.6082 -0.7070 21 6 6.2482 -12.8355 0.5376 22 6 5.7403 -12.1885 1.6511 23 9 6.2832 -12.4103 2.8681 24 6 4.6755 -11.3134 1.5164 25 6 4.2736 -8.5609 -1.2888 26 8 3.8852 -9.1173 -2.2886 27 8 5.3923 -7.8199 -1.3246 28 1 -0.4849 0.8401 -0.0004 29 1 3.1242 -3.7315 0.8895 30 1 3.1243 -3.7315 -0.8905 31 1 3.8006 -6.1837 0.0003 32 1 1.7223 -7.8748 -0.8927 33 1 1.7204 -7.8756 0.8873 34 1 2.3987 -10.3816 -0.7709 35 1 2.3234 -10.1994 0.9981 36 1 4.1946 -11.5574 -1.8131 37 1 6.0877 -13.1128 -1.5758 38 1 7.0785 -13.5183 0.6415 39 1 4.2790 -10.8075 2.3843 40 1 5.8532 -7.7615 -2.1727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739091725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:12 Heat of formation + Delta-G solvation = -186.847246 kcal Electronic energy + Delta-G solvation = -25903.043621 eV Core-core repulsion = 21721.886773 eV Total energy + Delta-G solvation = -4181.156848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.90272 -41.75836 -40.48791 -40.00125 -37.30048 -36.74808 -34.69128 -34.56859 -32.12584 -31.48579 -30.43800 -27.71283 -26.94455 -25.59900 -23.73742 -22.87576 -21.80456 -21.21188 -19.85268 -19.28503 -18.35704 -17.99946 -17.86325 -17.36542 -17.18804 -17.09312 -16.87390 -16.60914 -16.47671 -16.37002 -15.84351 -15.04378 -14.87819 -14.75212 -14.53357 -14.42839 -14.33520 -14.06407 -13.85299 -13.32021 -13.15176 -13.05844 -12.95149 -12.90593 -12.81751 -12.58669 -12.51899 -12.20288 -11.94512 -11.70416 -11.52247 -11.15236 -11.01336 -10.26650 -10.21567 -9.96869 -9.68317 -8.65711 -8.34280 -6.11873 0.12190 0.20786 1.14744 1.27117 1.42061 1.47335 1.58331 1.58821 2.04098 2.18624 2.28080 2.57499 3.00083 3.19230 3.31699 3.42492 3.73508 3.79694 3.84137 3.98256 4.03095 4.15314 4.23681 4.29887 4.35477 4.38637 4.51430 4.52295 4.68587 4.71973 4.85874 5.01532 5.08624 5.14248 5.30242 5.34209 5.43270 5.51870 5.61099 5.91496 6.20895 6.41062 6.95720 7.07426 7.18381 8.75091 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.022912 B = 0.001926 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.747712 B =14533.637864 C =14639.135919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.131 4.131 11 C 0.537 3.463 12 O -0.560 6.560 13 N -0.719 5.719 14 C 0.129 3.871 15 C -0.077 4.077 16 H 0.133 0.867 17 C -0.067 4.067 18 C -0.066 4.066 19 C -0.129 4.129 20 C -0.091 4.091 21 C -0.158 4.158 22 C 0.078 3.922 23 F -0.150 7.150 24 C -0.148 4.148 25 C 0.484 3.516 26 O -0.534 6.534 27 O -0.512 6.512 28 H 0.271 0.729 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.417 0.583 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.448 -26.632 0.454 31.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.282 4.282 11 C 0.323 3.677 12 O -0.438 6.438 13 N -0.374 5.374 14 C 0.006 3.994 15 C -0.096 4.096 16 H 0.151 0.849 17 C -0.105 4.105 18 C -0.067 4.067 19 C -0.147 4.147 20 C -0.109 4.109 21 C -0.176 4.176 22 C 0.059 3.941 23 F -0.128 7.128 24 C -0.167 4.167 25 C 0.327 3.673 26 O -0.423 6.423 27 O -0.325 6.325 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.254 0.746 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 14.043 -27.076 0.595 30.507 hybrid contribution 2.319 1.272 -0.474 2.687 sum 16.363 -25.804 0.121 30.555 Atomic orbital electron populations 1.70190 1.07944 1.28522 1.48101 1.26134 0.95984 1.03340 0.93821 0.84901 0.78631 0.76362 0.78028 1.18000 1.20051 1.19944 1.23236 0.95358 0.91972 1.58662 0.89868 1.85571 1.10471 0.99230 1.97045 1.23378 1.03622 0.94299 1.06907 1.20017 0.86159 0.86590 0.74975 1.90707 1.17230 1.86049 1.49815 1.45808 1.10498 1.05000 1.76094 1.21384 0.94810 0.78959 1.04292 1.21295 0.96281 0.97179 0.94857 0.84930 1.20588 0.95478 0.88003 1.06424 1.19699 0.97025 0.97563 0.92373 1.21465 0.97178 0.96960 0.99088 1.21288 0.95173 0.97098 0.97350 1.21425 1.02448 1.01899 0.91871 1.17953 0.95874 0.99871 0.80436 1.91487 1.85136 1.93740 1.42483 1.21236 0.96572 0.99595 0.99268 1.23496 0.78809 0.74143 0.90845 1.90705 1.68271 1.45920 1.37398 1.84497 1.37990 1.65694 1.44341 0.92018 0.86889 0.87390 0.74612 0.91757 0.88174 0.88976 0.86009 0.85109 0.82940 0.83347 0.82988 0.71130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.59 13.22 21.65 0.29 -55.30 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.54 -30.70 9.50 67.96 0.65 -30.06 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.21 20.57 -56.49 -1.16 -9.38 16 10 C -0.13 -5.01 6.15 71.23 0.44 -4.57 16 11 C 0.54 18.78 7.85 87.65 0.69 19.47 16 12 O -0.56 -24.81 15.86 -3.04 -0.05 -24.86 16 13 N -0.72 -16.48 5.35 -463.04 -2.48 -18.96 16 14 C 0.13 2.41 5.05 86.38 0.44 2.84 16 15 C -0.08 -0.97 2.31 -11.54 -0.03 -1.00 16 16 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 17 C -0.07 -0.73 4.63 29.85 0.14 -0.59 16 18 C -0.07 -0.83 4.75 -19.87 -0.09 -0.92 16 19 C -0.13 -1.70 8.90 22.27 0.20 -1.51 16 20 C -0.09 -1.02 10.04 22.26 0.22 -0.80 16 21 C -0.16 -1.94 10.03 22.31 0.22 -1.71 16 22 C 0.08 1.16 7.30 22.37 0.16 1.32 16 23 F -0.15 -2.61 17.27 44.97 0.78 -1.84 16 24 C -0.15 -1.88 9.70 22.31 0.22 -1.66 16 25 C 0.48 7.75 6.01 71.23 0.43 8.18 16 26 O -0.53 -11.44 15.83 21.96 0.35 -11.09 16 27 O -0.51 -6.12 13.13 -51.46 -0.68 -6.79 16 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.11 3.83 8.14 -2.39 -0.02 3.82 16 30 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 31 H 0.42 7.23 7.96 -92.71 -0.74 6.49 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 1.16 7.57 -2.39 -0.02 1.15 16 35 H 0.12 0.82 8.12 -2.39 -0.02 0.80 16 36 H 0.13 1.85 7.27 -2.91 -0.02 1.83 16 37 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.43 2.27 9.10 -74.06 -0.67 1.59 16 Total: -1.00 -80.80 370.84 2.91 -77.90 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -0.31 Total: 14.93 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.14 Total: -9.87 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -2.19 Total: -74.26 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.38 Total: -42.74 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.38 kcal Total: -80.80 2.91 -77.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739091725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.952 kcal (2) G-P(sol) polarization free energy of solvation -80.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds