Wall clock time and date at job start Sat Apr 11 2020 06:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29448 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48499 * 109.47329 * 274.96825 * 3 2 1 5 5 H 1.48506 * 109.47281 * 34.96670 * 3 2 1 6 6 H 1.48495 * 109.47287 * 154.96693 * 3 2 1 7 7 C 1.46465 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00028 * 172.80082 * 7 2 1 9 9 N 1.34370 * 119.99852 * 352.80758 * 7 2 1 10 10 C 1.37189 * 126.07845 * 187.70842 * 9 7 2 11 11 C 1.35252 * 107.44074 * 180.12265 * 10 9 7 12 12 N 1.40357 * 126.09204 * 179.84340 * 11 10 9 13 13 C 1.34781 * 119.99818 * 179.71368 * 12 11 10 14 14 O 1.21683 * 120.00165 * 0.02562 * 13 12 11 15 15 C 1.46899 * 119.99870 * 179.97438 * 13 12 11 16 16 C 1.36389 * 126.76944 * 6.78303 * 15 13 12 17 17 N 1.35487 * 109.76383 * 179.97438 * 16 15 13 18 18 H 0.96999 * 124.78733 * 179.97438 * 17 16 15 19 19 C 1.37960 * 110.42828 * 359.97438 * 17 16 15 20 20 C 1.39115 * 133.18788 * 179.97438 * 19 17 16 21 21 C 1.37767 * 119.93319 * 180.02562 * 20 19 17 22 22 C 1.38759 * 120.63044 * 0.02562 * 21 20 19 23 23 C 1.37755 * 120.30142 * 359.95532 * 22 21 20 24 24 N 1.48022 * 120.16023 * 180.02562 * 23 22 21 25 25 O 1.31701 * 120.00059 * 66.73471 * 24 23 22 26 26 O 1.31705 * 119.99575 * 246.73506 * 24 23 22 27 27 C 1.39272 * 119.67246 * 0.08627 * 23 22 21 28 28 C 1.41358 * 107.81452 * 359.58290 * 11 10 9 29 29 N 1.30555 * 108.43630 * 0.26152 * 28 11 10 30 30 H 0.97005 * 120.00059 * 0.02562 * 1 2 3 31 31 H 1.08002 * 126.28247 * 359.96375 * 10 9 7 32 32 H 0.97001 * 120.00286 * 359.71122 * 12 11 10 33 33 H 1.07998 * 125.11437 * 359.72949 * 16 15 13 34 34 H 1.08004 * 120.03650 * 0.04185 * 20 19 17 35 35 H 1.07996 * 119.68621 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.84624 * 180.02562 * 22 21 20 37 37 H 1.07997 * 125.78172 * 180.30055 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2945 0.0000 0.0000 3 14 2.2285 1.6177 0.0000 4 1 2.3710 2.1071 -1.3948 5 1 1.4823 2.6201 0.8024 6 1 3.5745 1.4122 0.5924 7 6 2.0268 -1.2684 0.0006 8 1 3.1005 -1.2721 -0.1166 9 7 1.3629 -2.4274 0.1468 10 6 1.9277 -3.6665 0.3137 11 6 0.9187 -4.5609 0.4196 12 7 1.0571 -5.9462 0.5980 13 6 -0.0380 -6.7260 0.6944 14 8 -1.1467 -6.2291 0.6263 15 6 0.1069 -8.1759 0.8806 16 6 1.2666 -8.8588 1.1019 17 7 1.0029 -10.1822 1.2239 18 1 1.6707 -10.8670 1.3850 19 6 -0.3494 -10.4183 1.0869 20 6 -1.1230 -11.5739 1.1269 21 6 -2.4871 -11.4944 0.9512 22 6 -3.1017 -10.2695 0.7333 23 6 -2.3529 -9.1140 0.6906 24 7 -3.0118 -7.8090 0.4585 25 8 -3.8310 -7.3147 1.3635 26 8 -2.7788 -7.1423 -0.6531 27 6 -0.9728 -9.1799 0.8658 28 6 -0.3001 -3.8512 0.3247 29 7 -0.0288 -2.5845 0.1627 30 1 -0.4850 0.8401 -0.0004 31 1 2.9842 -3.8876 0.3509 32 1 1.9409 -6.3424 0.6519 33 1 2.2479 -8.4123 1.1659 34 1 -0.6547 -12.5323 1.2957 35 1 -3.0838 -12.3940 0.9826 36 1 -4.1721 -10.2218 0.5976 37 1 -1.2884 -4.2836 0.3778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762966511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:26 Heat of formation + Delta-G solvation = 156.632609 kcal Electronic energy + Delta-G solvation = -28472.437197 eV Core-core repulsion = 24222.943514 eV Total energy + Delta-G solvation = -4249.493683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -42.08820 -39.63396 -38.69523 -38.22317 -37.08091 -34.10054 -33.68791 -33.14894 -32.65213 -30.60108 -30.36039 -29.80380 -27.59014 -26.27582 -24.56027 -23.18693 -22.74567 -22.61189 -20.77213 -19.82919 -19.24667 -18.93513 -17.62115 -17.43547 -17.22786 -16.63089 -16.11011 -15.95058 -15.46788 -15.36058 -15.31402 -15.01251 -14.21086 -14.07459 -13.97696 -13.46822 -13.10115 -12.97919 -12.78166 -12.53367 -12.45575 -12.28447 -11.80097 -11.25788 -11.22656 -10.88241 -10.80418 -10.51828 -10.49097 -10.39667 -10.13951 -9.82002 -9.15890 -9.09129 -9.03068 -8.63457 -8.44840 -7.99095 -6.65911 -6.59243 -3.97789 -0.08370 0.56345 0.81810 1.50061 1.63500 2.38828 2.93188 2.98208 3.04883 3.09609 3.50655 3.61501 3.86333 3.95127 4.01073 4.17422 4.37256 4.47654 4.54851 4.66820 4.73146 4.93289 4.96913 4.98307 5.05594 5.41006 5.59953 5.64776 5.74126 5.84845 6.12163 6.38089 6.41958 6.61112 6.77645 6.91666 7.11726 7.19997 7.21858 7.39281 7.95471 8.27275 8.36581 8.69350 8.99382 9.60876 9.86659 10.29387 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.002714 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.983183 B =10313.756034 C =11385.222786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.057 3.943 3 Si 0.933 3.067 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.350 4.350 8 H 0.118 0.882 9 N -0.124 5.124 10 C -0.108 4.108 11 C -0.063 4.063 12 N -0.614 5.614 13 C 0.555 3.445 14 O -0.515 6.515 15 C -0.203 4.203 16 C 0.115 3.885 17 N -0.573 5.573 18 H 0.427 0.573 19 C 0.098 3.902 20 C -0.086 4.086 21 C -0.097 4.097 22 C -0.086 4.086 23 C 0.065 3.935 24 N -0.023 5.023 25 O -0.180 6.180 26 O -0.083 6.083 27 C -0.038 4.038 28 C -0.025 4.025 29 N -0.281 5.281 30 H 0.283 0.717 31 H 0.141 0.859 32 H 0.390 0.610 33 H 0.190 0.810 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.180 -25.061 2.759 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.168 4.168 3 Si 0.756 3.244 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.485 4.485 8 H 0.135 0.865 9 N 0.112 4.888 10 C -0.257 4.257 11 C -0.168 4.168 12 N -0.255 5.255 13 C 0.341 3.659 14 O -0.391 6.391 15 C -0.214 4.214 16 C -0.017 4.017 17 N -0.175 5.175 18 H 0.265 0.735 19 C -0.009 4.009 20 C -0.106 4.106 21 C -0.117 4.117 22 C -0.106 4.106 23 C -0.018 4.018 24 N 0.472 4.528 25 O -0.370 6.370 26 O -0.301 6.301 27 C -0.045 4.045 28 C -0.199 4.199 29 N -0.113 5.113 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.223 0.777 33 H 0.207 0.793 34 H 0.158 0.842 35 H 0.168 0.832 36 H 0.163 0.837 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.019 -24.132 2.825 24.483 hybrid contribution 1.576 -0.329 0.167 1.618 sum 4.595 -24.461 2.992 25.068 Atomic orbital electron populations 1.69284 1.07766 1.29157 1.29366 1.27100 0.94963 1.00116 0.94654 0.85861 0.79988 0.79530 0.79033 1.19450 1.19923 1.18388 1.20744 0.92065 0.80861 1.54840 0.86464 1.43683 1.04270 1.03859 1.37010 1.21057 0.96396 0.85986 1.22262 1.17118 0.94404 0.81370 1.23933 1.42111 1.07239 1.05798 1.70364 1.16925 0.85173 0.83878 0.79889 1.90841 1.24671 1.73875 1.49741 1.20367 0.91358 0.93985 1.15684 1.22276 0.99595 0.82222 0.97606 1.41470 1.06174 1.08194 1.61679 0.73463 1.17884 0.83891 0.93937 1.05227 1.20349 0.93292 0.95944 1.01019 1.20739 0.93618 0.96960 1.00364 1.20745 1.00742 0.89928 0.99175 1.19563 0.90601 0.82463 1.09143 1.50001 0.99284 1.01690 1.01794 1.96248 1.31782 1.72262 1.36743 1.96284 1.65000 1.58459 1.10400 1.18185 0.90058 0.93355 1.02892 1.24164 0.97994 0.90655 1.07109 1.78070 0.89985 1.15732 1.27466 0.90522 0.84153 0.77749 0.79273 0.84193 0.83187 0.83723 0.80525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.55 11.93 55.98 0.67 -19.88 16 2 C 0.06 1.48 5.68 -15.24 -0.09 1.39 16 3 Si 0.93 18.79 29.65 -169.99 -5.04 13.75 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 7 C -0.35 -9.48 10.46 -13.13 -0.14 -9.62 16 8 H 0.12 2.85 7.95 -52.48 -0.42 2.43 16 9 N -0.12 -3.51 3.65 -10.02 -0.04 -3.55 16 10 C -0.11 -2.64 11.48 -16.22 -0.19 -2.83 16 11 C -0.06 -1.52 6.90 -83.83 -0.58 -2.10 16 12 N -0.61 -11.50 5.44 -11.08 -0.06 -11.56 16 13 C 0.56 10.86 7.76 -12.75 -0.10 10.76 16 14 O -0.51 -12.38 9.25 -19.29 -0.18 -12.56 16 15 C -0.20 -2.94 6.27 -103.31 -0.65 -3.59 16 16 C 0.11 0.98 11.33 -16.60 -0.19 0.79 16 17 N -0.57 -3.53 5.99 -10.48 -0.06 -3.60 16 18 H 0.43 0.79 8.96 -40.82 -0.37 0.42 16 19 C 0.10 0.88 7.26 -83.97 -0.61 0.27 16 20 C -0.09 -0.53 10.07 -39.43 -0.40 -0.93 16 21 C -0.10 -0.65 10.01 -39.56 -0.40 -1.04 16 22 C -0.09 -0.90 9.96 -39.57 -0.39 -1.30 16 23 C 0.07 0.99 6.30 -79.74 -0.50 0.49 16 24 N -0.02 -0.46 3.20 34.07 0.11 -0.35 16 25 O -0.18 -3.86 19.97 -31.73 -0.63 -4.50 16 26 O -0.08 -1.86 17.18 -39.93 -0.69 -2.54 16 27 C -0.04 -0.54 6.26 -104.95 -0.66 -1.19 16 28 C -0.02 -0.71 10.85 -16.91 -0.18 -0.89 16 29 N -0.28 -8.57 10.51 30.89 0.32 -8.24 16 30 H 0.28 7.11 8.27 -40.82 -0.34 6.78 16 31 H 0.14 2.86 8.06 -52.49 -0.42 2.43 16 32 H 0.39 5.32 7.74 -40.82 -0.32 5.00 16 33 H 0.19 0.85 7.42 -52.49 -0.39 0.46 16 34 H 0.14 0.34 8.06 -52.48 -0.42 -0.09 16 35 H 0.15 0.46 8.06 -52.49 -0.42 0.03 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.18 5.14 5.92 -52.49 -0.31 4.83 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -40.93 337.17 -8.20 -49.13 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -2.62 Total: 8.60 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -5.06 Total: -9.79 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.94 Total: -47.18 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -1.50 Total: -19.59 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.04 Total: 13.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -40.93 -8.20 -49.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762966511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.763 kcal (2) G-P(sol) polarization free energy of solvation -40.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds