Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99934 * 2 1 4 4 H 1.48497 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47026 * 299.99681 * 3 2 1 6 6 H 1.48497 * 109.47191 * 59.99445 * 3 2 1 7 7 C 1.37876 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99859 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47244 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.46855 * 179.97438 * 10 9 7 12 12 O 1.42099 * 110.54301 * 68.37823 * 11 10 9 13 13 O 1.42103 * 110.54431 * 291.62178 * 11 10 9 14 14 N 1.65609 * 104.44739 * 179.97438 * 11 10 9 15 15 C 1.34773 * 119.99897 * 64.99878 * 14 11 10 16 16 O 1.21288 * 120.00264 * 0.02562 * 15 14 11 17 17 C 1.50699 * 119.99976 * 180.02562 * 15 14 11 18 18 C 1.50696 * 115.55180 * 325.58376 * 17 15 14 19 19 C 1.38225 * 120.01305 * 98.41729 * 18 17 15 20 20 C 1.38223 * 120.02563 * 179.97438 * 19 18 17 21 21 C 1.38264 * 120.04950 * 0.02570 * 20 19 18 22 22 C 1.38175 * 120.02928 * 359.95390 * 21 20 19 23 23 C 1.38443 * 120.01461 * 278.38127 * 18 17 15 24 24 F 1.35103 * 120.02248 * 0.03895 * 23 18 17 25 25 C 1.53005 * 117.51771 * 111.28572 * 17 15 14 26 26 C 1.53005 * 59.99992 * 107.48168 * 25 17 15 27 27 H 0.97008 * 120.00293 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47139 * 59.99408 * 9 7 2 29 29 H 1.09007 * 109.46756 * 299.99770 * 9 7 2 30 30 H 1.09000 * 109.46878 * 59.99742 * 10 9 7 31 31 H 1.09001 * 109.46866 * 299.99973 * 10 9 7 32 32 H 0.96996 * 119.99943 * 245.00300 * 14 11 10 33 33 H 1.07995 * 119.98391 * 359.96132 * 19 18 17 34 34 H 1.07999 * 119.97321 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.98796 * 179.97438 * 21 20 19 36 36 H 1.07995 * 120.01383 * 179.74595 * 22 21 20 37 37 H 1.09000 * 117.49467 * 214.96916 * 25 17 15 38 38 H 1.08995 * 117.49829 * 359.97438 * 25 17 15 39 39 H 1.09000 * 117.49898 * 252.51110 * 26 25 17 40 40 H 1.08995 * 117.51780 * 107.47799 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3382 -5.2330 0.0013 12 8 0.6639 -5.4200 -1.2354 13 8 0.6647 -5.4193 1.2386 14 7 2.5205 -6.3927 0.0005 15 6 3.3477 -6.5124 1.0577 16 8 3.2261 -5.7710 2.0100 17 6 4.4239 -7.5673 1.0568 18 6 4.0682 -8.8580 0.3651 19 6 4.4845 -9.0840 -0.9335 20 6 4.1589 -10.2680 -1.5680 21 6 3.4161 -11.2274 -0.9050 22 6 2.9992 -11.0039 0.3933 23 6 3.3251 -9.8182 1.0301 24 9 2.9176 -9.5984 2.2994 25 6 5.8766 -7.0952 0.9680 26 6 5.3320 -7.6512 2.2853 27 1 -0.4851 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8720 -3.6043 0.8905 31 1 2.8719 -3.6043 -0.8895 32 1 2.6175 -6.9858 -0.7608 33 1 5.0642 -8.3351 -1.4525 34 1 4.4849 -10.4439 -2.5825 35 1 3.1619 -12.1520 -1.4019 36 1 2.4155 -11.7516 0.9095 37 1 6.5749 -7.7182 0.4092 38 1 6.0540 -6.0213 0.9098 39 1 5.1513 -6.9431 3.0940 40 1 5.6718 -8.6399 2.5933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776115313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -107.677769 kcal Electronic energy + Delta-G solvation = -27591.879319 eV Core-core repulsion = 23414.155517 eV Total energy + Delta-G solvation = -4177.723802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.12599 -40.85285 -39.19052 -36.92296 -36.54311 -35.61239 -34.48192 -33.90149 -31.28696 -31.18932 -30.76200 -25.80421 -25.49051 -23.64419 -23.04000 -22.31044 -21.67895 -20.48326 -19.33824 -18.48384 -17.72076 -17.48936 -16.61519 -16.54632 -16.02335 -15.90534 -15.71130 -15.38300 -14.99691 -14.94921 -14.56555 -14.53637 -14.43539 -13.53123 -13.44292 -13.30413 -12.79931 -12.55104 -12.41547 -12.34667 -11.87894 -11.80643 -11.72242 -11.69001 -11.61084 -11.09741 -11.04157 -10.99860 -10.87996 -10.72271 -10.47894 -10.36079 -10.32303 -9.71946 -9.40286 -9.17549 -9.05057 -8.50250 -6.12145 -4.17663 0.48206 0.66912 0.76296 1.91889 2.69321 3.10605 3.26361 3.31924 3.33417 3.37089 3.86792 3.93435 3.97420 4.14533 4.33112 4.37462 4.43131 4.53625 4.56556 4.63169 4.85392 4.92067 4.94457 5.20075 5.23215 5.25980 5.41560 5.57794 5.58429 5.62938 5.71022 5.71513 5.80253 5.86461 5.95420 6.43491 6.44388 6.61355 7.28139 7.34740 7.42366 7.80921 8.16421 8.85423 9.46898 10.99020 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.003017 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.942039 B = 9278.505314 C = 9670.299153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.574 4.574 11 S 2.562 3.438 12 O -0.953 6.953 13 O -0.936 6.936 14 N -1.053 6.053 15 C 0.577 3.423 16 O -0.481 6.481 17 C -0.137 4.137 18 C -0.095 4.095 19 C -0.082 4.082 20 C -0.129 4.129 21 C -0.086 4.086 22 C -0.154 4.154 23 C 0.116 3.884 24 F -0.129 7.129 25 C -0.135 4.135 26 C -0.127 4.127 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.427 0.573 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.530 -23.949 -2.856 27.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.081 0.919 9 C -0.010 4.010 10 C -0.709 4.709 11 S 2.663 3.337 12 O -0.944 6.944 13 O -0.926 6.926 14 N -0.813 5.813 15 C 0.362 3.638 16 O -0.352 6.352 17 C -0.142 4.142 18 C -0.096 4.096 19 C -0.100 4.100 20 C -0.147 4.147 21 C -0.104 4.104 22 C -0.173 4.173 23 C 0.097 3.903 24 F -0.107 7.107 25 C -0.172 4.172 26 C -0.165 4.165 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.262 0.738 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.321 -23.519 -2.071 26.632 hybrid contribution 0.778 0.782 -0.294 1.142 sum 13.099 -22.737 -2.365 26.347 Atomic orbital electron populations 1.69967 1.06117 1.27130 1.49587 1.25071 0.94997 0.99569 0.94868 0.86386 0.79922 0.83057 0.77759 1.19614 1.20793 1.20754 1.21007 0.93131 0.89528 1.52129 0.91889 1.19006 0.92638 0.90317 0.99068 1.30340 1.13732 1.16055 1.10776 1.06831 0.75035 0.77295 0.74580 1.93588 1.70407 1.85300 1.45059 1.93604 1.70220 1.84323 1.44444 1.55349 1.49006 1.50259 1.26694 1.19175 0.80449 0.83275 0.80861 1.90912 1.69040 1.42957 1.32266 1.20017 0.92824 0.93846 1.07504 1.18919 1.01707 0.93706 0.95252 1.21027 0.98613 0.97742 0.92661 1.21243 0.99149 0.93650 1.00642 1.21108 0.96281 0.99563 0.93467 1.21219 1.02976 0.96703 0.96416 1.17629 0.97608 0.94802 0.80277 1.91561 1.88235 1.94903 1.36009 1.23191 0.90343 1.02961 1.00730 1.23135 0.98011 1.03880 0.91439 0.92548 0.94726 0.94542 0.85053 0.85967 0.73818 0.84353 0.84804 0.84743 0.84372 0.87041 0.87051 0.86355 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 9 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 10 C -0.57 -11.66 5.82 37.16 0.22 -11.44 16 11 S 2.56 49.30 5.11 -107.50 -0.55 48.75 16 12 O -0.95 -19.63 18.08 -57.54 -1.04 -20.67 16 13 O -0.94 -21.60 17.04 -64.79 -1.10 -22.71 16 14 N -1.05 -15.20 5.51 31.22 0.17 -15.03 16 15 C 0.58 8.57 7.12 -10.99 -0.08 8.49 16 16 O -0.48 -8.84 14.36 -11.57 -0.17 -9.01 16 17 C -0.14 -1.47 1.77 -156.81 -0.28 -1.75 16 18 C -0.09 -0.90 4.23 -104.55 -0.44 -1.34 16 19 C -0.08 -0.57 9.13 -39.59 -0.36 -0.93 16 20 C -0.13 -0.75 10.04 -39.58 -0.40 -1.15 16 21 C -0.09 -0.53 10.04 -39.59 -0.40 -0.92 16 22 C -0.15 -1.24 10.03 -39.52 -0.40 -1.63 16 23 C 0.12 1.22 7.20 -39.42 -0.28 0.93 16 24 F -0.13 -1.65 16.62 2.25 0.04 -1.61 16 25 C -0.14 -1.05 9.59 -26.73 -0.26 -1.31 16 26 C -0.13 -1.20 9.51 -26.73 -0.25 -1.46 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.13 2.61 7.19 -51.92 -0.37 2.23 16 31 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 32 H 0.43 4.70 7.88 -34.48 -0.27 4.43 16 33 H 0.14 0.67 7.97 -52.49 -0.42 0.25 16 34 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 35 H 0.13 0.49 8.06 -52.48 -0.42 0.06 16 36 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.11 0.59 8.04 -51.93 -0.42 0.18 16 38 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.12 1.26 7.67 -51.93 -0.40 0.86 16 40 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -37.62 364.58 -9.72 -47.34 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.80 Total: 2.26 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -3.48 Total: -25.23 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.91 Total: -41.02 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -2.31 Total: -52.39 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 49.30 SS G_CDS: -0.55 Total: 48.75 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.62 -9.72 -47.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.333 kcal (2) G-P(sol) polarization free energy of solvation -37.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds