Wall clock time and date at job start Sat Apr 11 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99934 * 2 1 4 4 H 1.48497 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47026 * 299.99681 * 3 2 1 6 6 H 1.48497 * 109.47191 * 59.99445 * 3 2 1 7 7 C 1.37876 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99859 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47244 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.46855 * 179.97438 * 10 9 7 12 12 O 1.42099 * 110.54301 * 68.37823 * 11 10 9 13 13 O 1.42103 * 110.54431 * 291.62178 * 11 10 9 14 14 N 1.65609 * 104.44739 * 179.97438 * 11 10 9 15 15 C 1.34773 * 119.99897 * 64.99878 * 14 11 10 16 16 O 1.21288 * 120.00264 * 0.02562 * 15 14 11 17 17 C 1.50699 * 119.99976 * 180.02562 * 15 14 11 18 18 C 1.50696 * 115.55180 * 325.58376 * 17 15 14 19 19 C 1.38225 * 120.01305 * 98.41729 * 18 17 15 20 20 C 1.38223 * 120.02563 * 179.97438 * 19 18 17 21 21 C 1.38264 * 120.04950 * 0.02570 * 20 19 18 22 22 C 1.38175 * 120.02928 * 359.95390 * 21 20 19 23 23 C 1.38443 * 120.01461 * 278.38127 * 18 17 15 24 24 F 1.35103 * 120.02248 * 0.03895 * 23 18 17 25 25 C 1.53005 * 117.51771 * 111.28572 * 17 15 14 26 26 C 1.53005 * 59.99992 * 107.48168 * 25 17 15 27 27 H 0.97008 * 120.00293 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47139 * 59.99408 * 9 7 2 29 29 H 1.09007 * 109.46756 * 299.99770 * 9 7 2 30 30 H 1.09000 * 109.46878 * 59.99742 * 10 9 7 31 31 H 1.09001 * 109.46866 * 299.99973 * 10 9 7 32 32 H 0.96996 * 119.99943 * 245.00300 * 14 11 10 33 33 H 1.07995 * 119.98391 * 359.96132 * 19 18 17 34 34 H 1.07999 * 119.97321 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.98796 * 179.97438 * 21 20 19 36 36 H 1.07995 * 120.01383 * 179.74595 * 22 21 20 37 37 H 1.09000 * 117.49467 * 214.96916 * 25 17 15 38 38 H 1.08995 * 117.49829 * 359.97438 * 25 17 15 39 39 H 1.09000 * 117.49898 * 252.51110 * 26 25 17 40 40 H 1.08995 * 117.51780 * 107.47799 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3382 -5.2330 0.0013 12 8 0.6639 -5.4200 -1.2354 13 8 0.6647 -5.4193 1.2386 14 7 2.5205 -6.3927 0.0005 15 6 3.3477 -6.5124 1.0577 16 8 3.2261 -5.7710 2.0100 17 6 4.4239 -7.5673 1.0568 18 6 4.0682 -8.8580 0.3651 19 6 4.4845 -9.0840 -0.9335 20 6 4.1589 -10.2680 -1.5680 21 6 3.4161 -11.2274 -0.9050 22 6 2.9992 -11.0039 0.3933 23 6 3.3251 -9.8182 1.0301 24 9 2.9176 -9.5984 2.2994 25 6 5.8766 -7.0952 0.9680 26 6 5.3320 -7.6512 2.2853 27 1 -0.4851 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8720 -3.6043 0.8905 31 1 2.8719 -3.6043 -0.8895 32 1 2.6175 -6.9858 -0.7608 33 1 5.0642 -8.3351 -1.4525 34 1 4.4849 -10.4439 -2.5825 35 1 3.1619 -12.1520 -1.4019 36 1 2.4155 -11.7516 0.9095 37 1 6.5749 -7.7182 0.4092 38 1 6.0540 -6.0213 0.9098 39 1 5.1513 -6.9431 3.0940 40 1 5.6718 -8.6399 2.5933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776115313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:34 Heat of formation + Delta-G solvation = -134.075610 kcal Electronic energy + Delta-G solvation = -27593.024016 eV Core-core repulsion = 23414.155517 eV Total energy + Delta-G solvation = -4178.868499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.92945 -41.86915 -39.93404 -38.40874 -37.52108 -37.30983 -36.00286 -35.73621 -33.22145 -31.83790 -31.31418 -27.71021 -26.57052 -24.28539 -23.84482 -23.60230 -22.92298 -21.50125 -20.82192 -19.43974 -19.23702 -18.48069 -18.23980 -17.45573 -17.20017 -17.05198 -16.72202 -16.56164 -16.51440 -16.20622 -16.08721 -15.40512 -15.21287 -15.01601 -14.51636 -14.19331 -14.08675 -13.97904 -13.81064 -13.46876 -13.35743 -13.30576 -12.99366 -12.90314 -12.85989 -12.51444 -12.38647 -12.31957 -12.28344 -12.07383 -11.79351 -11.70065 -11.56759 -11.39135 -11.11118 -10.68086 -9.97169 -9.66618 -8.28786 -6.43285 -1.10767 0.08683 0.22568 0.77715 1.30558 1.39970 1.41511 1.54810 2.35050 2.45199 2.53998 2.60835 2.90103 3.04810 3.14011 3.28431 3.31860 3.65290 3.74575 3.75944 3.95832 3.97177 3.97387 4.15898 4.38141 4.44013 4.57105 4.63157 4.67186 4.87019 4.95408 5.10081 5.13642 5.17896 5.18764 5.19446 5.35646 5.46513 5.51429 5.64659 5.91973 6.00611 6.26854 6.69381 7.26868 8.84010 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.003017 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.942039 B = 9278.505314 C = 9670.299153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.004 4.004 3 Si 0.978 3.022 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.022 3.978 10 C -0.571 4.571 11 S 2.590 3.410 12 O -0.967 6.967 13 O -0.980 6.980 14 N -1.034 6.034 15 C 0.572 3.428 16 O -0.523 6.523 17 C -0.148 4.148 18 C -0.106 4.106 19 C -0.080 4.080 20 C -0.121 4.121 21 C -0.082 4.082 22 C -0.163 4.163 23 C 0.078 3.922 24 F -0.155 7.155 25 C -0.104 4.104 26 C -0.137 4.137 27 H 0.268 0.732 28 H 0.017 0.983 29 H 0.003 0.997 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.444 0.556 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.637 -25.085 -5.182 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.801 3.199 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.095 0.905 9 C -0.017 4.017 10 C -0.705 4.705 11 S 2.690 3.310 12 O -0.958 6.958 13 O -0.970 6.970 14 N -0.799 5.799 15 C 0.360 3.640 16 O -0.397 6.397 17 C -0.153 4.153 18 C -0.107 4.107 19 C -0.098 4.098 20 C -0.138 4.138 21 C -0.100 4.100 22 C -0.182 4.182 23 C 0.059 3.941 24 F -0.134 7.134 25 C -0.141 4.141 26 C -0.175 4.175 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.022 0.978 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.284 0.716 33 H 0.182 0.818 34 H 0.184 0.816 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.435 -24.676 -4.427 29.440 hybrid contribution -0.184 0.993 0.396 1.085 sum 15.251 -23.682 -4.031 28.455 Atomic orbital electron populations 1.70109 1.08091 1.28403 1.50664 1.26145 0.95919 1.03964 0.94198 0.85211 0.79136 0.77695 0.77880 1.17860 1.19926 1.20532 1.21489 0.94011 0.90486 1.51846 0.90528 1.18856 0.93454 0.92738 0.96669 1.30199 1.12813 1.14763 1.12743 1.05690 0.74911 0.77171 0.73240 1.93558 1.71349 1.85569 1.45296 1.93550 1.71959 1.85022 1.46486 1.54813 1.48026 1.49354 1.27701 1.20029 0.80690 0.83505 0.79777 1.90893 1.70198 1.44944 1.33657 1.19957 0.92633 0.93431 1.09292 1.18929 1.02708 0.92785 0.96322 1.21367 0.98193 0.98796 0.91435 1.21677 0.97684 0.92681 1.01790 1.21511 0.95242 1.00744 0.92496 1.21445 1.03209 0.96118 0.97429 1.18106 0.99544 0.96561 0.79897 1.91490 1.88842 1.95210 1.37810 1.23407 0.88216 1.03609 0.98851 1.23186 0.98335 1.04437 0.91508 0.92270 0.96519 0.97842 0.84623 0.82498 0.71628 0.81774 0.81613 0.81946 0.83753 0.83484 0.86966 0.88385 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.98 43.82 29.54 68.60 2.03 45.85 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 9 C 0.02 1.19 4.98 29.85 0.15 1.34 16 10 C -0.57 -23.37 5.82 71.98 0.42 -22.95 16 11 S 2.59 101.42 5.11 -56.49 -0.29 101.13 16 12 O -0.97 -39.97 18.08 -127.65 -2.31 -42.28 16 13 O -0.98 -47.32 17.04 -120.72 -2.06 -49.38 16 14 N -1.03 -29.24 5.51 -173.53 -0.96 -30.19 16 15 C 0.57 16.91 7.12 87.66 0.62 17.54 16 16 O -0.52 -19.88 14.36 13.31 0.19 -19.69 16 17 C -0.15 -3.00 1.77 -53.67 -0.10 -3.10 16 18 C -0.11 -1.82 4.23 -19.82 -0.08 -1.91 16 19 C -0.08 -0.80 9.13 22.26 0.20 -0.59 16 20 C -0.12 -0.87 10.04 22.27 0.22 -0.65 16 21 C -0.08 -0.73 10.04 22.26 0.22 -0.51 16 22 C -0.16 -2.40 10.03 22.31 0.22 -2.18 16 23 C 0.08 1.60 7.20 22.38 0.16 1.76 16 24 F -0.15 -4.18 16.62 44.97 0.75 -3.43 16 25 C -0.10 -1.33 9.59 30.60 0.29 -1.04 16 26 C -0.14 -2.50 9.51 30.60 0.29 -2.21 16 27 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 28 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 30 H 0.14 5.45 7.19 -2.39 -0.02 5.43 16 31 H 0.16 5.20 8.14 -2.39 -0.02 5.18 16 32 H 0.44 9.06 7.88 -96.74 -0.76 8.30 16 33 H 0.16 0.73 7.97 -2.91 -0.02 0.71 16 34 H 0.17 0.18 8.06 -2.91 -0.02 0.15 16 35 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 36 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 37 H 0.15 0.86 8.04 -2.39 -0.02 0.84 16 38 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.10 2.18 7.67 -2.39 -0.02 2.17 16 40 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -85.91 364.58 1.29 -84.63 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.32 Total: 15.19 kcal Atomic # 6 Polarization: -47.93 SS G_CDS: 3.33 Total: -44.61 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -0.67 Total: -87.41 kcal Atomic # 8 Polarization: -107.17 SS G_CDS: -4.17 Total: -111.34 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.75 Total: -3.43 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 101.42 SS G_CDS: -0.29 Total: 101.13 kcal Total: -85.91 1.29 -84.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.450 kcal (2) G-P(sol) polarization free energy of solvation -85.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds