Wall clock time and date at job start Sat Apr 11 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47153 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54033 * 291.62070 * 11 10 9 13 13 O 1.42093 * 110.54359 * 68.37403 * 11 10 9 14 14 N 1.65606 * 104.44724 * 180.02562 * 11 10 9 15 15 C 1.34773 * 120.00253 * 64.99636 * 14 11 10 16 16 O 1.21286 * 120.00222 * 0.02562 * 15 14 11 17 17 C 1.50703 * 120.00239 * 180.02562 * 15 14 11 18 18 H 1.08999 * 115.54571 * 34.41806 * 17 15 14 19 19 C 1.52997 * 117.49979 * 248.75169 * 17 15 14 20 20 C 1.52996 * 117.49924 * 180.09020 * 17 15 14 21 21 H 1.09004 * 117.49309 * 214.97947 * 20 17 15 22 22 C 1.50693 * 117.49977 * 359.97438 * 20 17 15 23 23 C 1.38252 * 119.97254 * 59.73088 * 22 20 17 24 24 C 1.38192 * 120.02452 * 179.76617 * 23 22 20 25 25 C 1.38467 * 119.97431 * 0.50494 * 24 23 22 26 26 F 1.35101 * 120.02401 * 179.76894 * 25 24 23 27 27 C 1.38457 * 119.94911 * 359.74505 * 25 24 23 28 28 C 1.38202 * 119.97259 * 0.02562 * 27 25 24 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 31 31 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 32 32 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 33 33 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 34 34 H 0.97001 * 119.99859 * 245.00017 * 14 11 10 35 35 H 1.09003 * 117.49863 * 0.02562 * 19 17 15 36 36 H 1.09001 * 117.49828 * 144.99263 * 19 17 15 37 37 H 1.08000 * 119.98510 * 0.02562 * 23 22 20 38 38 H 1.08004 * 120.01352 * 180.24999 * 24 23 22 39 39 H 1.07999 * 120.01548 * 179.97438 * 27 25 24 40 40 H 1.07997 * 119.98592 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6639 -5.4201 1.2355 13 8 0.6646 -5.4193 -1.2385 14 7 2.5204 -6.3928 -0.0005 15 6 3.3462 -6.5126 1.0578 16 8 3.2232 -5.7714 2.0100 17 6 4.4224 -7.5676 1.0583 18 1 4.8714 -7.7814 0.0884 19 6 4.2692 -8.7326 2.0381 20 6 5.3261 -7.6543 2.2898 21 1 6.3697 -7.9256 2.1300 22 6 5.0724 -6.6779 3.4092 23 6 3.8439 -6.6579 4.0431 24 6 3.6117 -5.7662 5.0730 25 6 4.6064 -4.8855 5.4630 26 9 4.3789 -4.0101 6.4666 27 6 5.8346 -4.9029 4.8240 28 6 6.0661 -5.7987 3.7974 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5571 0.8897 31 1 0.6240 -2.5568 -0.8903 32 1 2.8719 -3.6044 -0.8906 33 1 2.8719 -3.6044 0.8894 34 1 2.6185 -6.9858 -0.7618 35 1 3.3898 -8.7363 2.6822 36 1 4.6174 -9.7129 1.7128 37 1 3.0669 -7.3422 3.7360 38 1 2.6533 -5.7535 5.5707 39 1 6.6110 -4.2161 5.1271 40 1 7.0241 -5.8128 3.2991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776116427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:38 Heat of formation + Delta-G solvation = -100.108249 kcal Electronic energy + Delta-G solvation = -27641.250410 eV Core-core repulsion = 23463.854846 eV Total energy + Delta-G solvation = -4177.395563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.75069 -40.94268 -38.82402 -36.82786 -36.45741 -35.63948 -34.46406 -33.89650 -31.18605 -31.08596 -30.19106 -25.70912 -25.31116 -24.01060 -22.87394 -21.72574 -21.37627 -20.44467 -19.33853 -18.25781 -17.66989 -17.44911 -16.54803 -16.32789 -15.83372 -15.67844 -15.44610 -15.25140 -15.06002 -14.73115 -14.53952 -14.51424 -13.75322 -13.54776 -13.45350 -13.10654 -12.98606 -12.54044 -12.40001 -12.16057 -11.82058 -11.75500 -11.71851 -11.64069 -11.10982 -11.07969 -11.01979 -10.98755 -10.83644 -10.73358 -10.40847 -10.37667 -10.21798 -9.71361 -9.18623 -8.89018 -8.49342 -8.25566 -6.11825 -4.17136 0.47248 1.12412 1.35228 1.97564 2.68054 3.28041 3.29997 3.33867 3.36429 3.76864 3.89378 4.06681 4.25775 4.37938 4.38066 4.41701 4.56968 4.61378 4.71207 4.91439 4.96087 4.97805 5.19975 5.23671 5.31821 5.33742 5.47648 5.59061 5.68328 5.71868 5.93368 6.04673 6.21937 6.31529 6.45148 6.51247 6.62081 6.96971 7.27832 7.34481 7.45466 7.81282 8.16987 8.85675 9.47466 10.99348 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009396 B = 0.004257 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.136578 B = 6576.014098 C = 8563.962700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.574 4.574 11 S 2.565 3.435 12 O -0.938 6.938 13 O -0.956 6.956 14 N -1.055 6.055 15 C 0.556 3.444 16 O -0.472 6.472 17 C -0.188 4.188 18 H 0.137 0.863 19 C -0.146 4.146 20 C -0.074 4.074 21 H 0.127 0.873 22 C -0.071 4.071 23 C -0.030 4.030 24 C -0.154 4.154 25 C 0.102 3.898 26 F -0.143 7.143 27 C -0.163 4.163 28 C -0.081 4.081 29 H 0.265 0.735 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.428 0.572 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.660 -19.935 3.957 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.197 1.197 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.709 4.709 11 S 2.665 3.335 12 O -0.928 6.928 13 O -0.946 6.946 14 N -0.816 5.816 15 C 0.342 3.658 16 O -0.343 6.343 17 C -0.210 4.210 18 H 0.155 0.845 19 C -0.183 4.183 20 C -0.093 4.093 21 H 0.145 0.855 22 C -0.071 4.071 23 C -0.048 4.048 24 C -0.173 4.173 25 C 0.083 3.917 26 F -0.122 7.122 27 C -0.181 4.181 28 C -0.099 4.099 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.262 0.738 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.456 -19.476 4.714 23.595 hybrid contribution 0.900 1.181 -0.533 1.578 sum 13.357 -18.295 4.181 23.035 Atomic orbital electron populations 1.69955 1.06114 1.27222 1.49569 1.25056 0.94977 0.99523 0.94835 0.86458 0.79678 0.82775 0.78320 1.20390 1.19749 1.20977 1.20965 0.93075 0.89572 1.52194 0.92009 1.18982 0.92601 0.90360 0.98946 1.30327 1.13671 1.16152 1.10732 1.06716 0.74994 0.77283 0.74470 1.93591 1.70310 1.84374 1.44541 1.93588 1.70576 1.85330 1.45132 1.55457 1.49133 1.50190 1.26826 1.19705 0.80871 0.84269 0.80970 1.90996 1.69260 1.42512 1.31530 1.22438 1.00647 1.00028 0.97929 0.84509 1.23241 1.01593 0.93390 1.00069 1.21074 0.97016 0.98216 0.93006 0.85488 1.18860 0.94440 0.97340 0.96442 1.20636 0.95415 0.96732 0.92010 1.21031 0.99090 0.97220 0.99926 1.17729 0.95124 0.90517 0.88380 1.91487 1.95164 1.67294 1.58244 1.20973 0.96450 1.01895 0.98823 1.20622 0.98908 0.94332 0.96014 0.92511 0.94641 0.94819 0.86142 0.85054 0.73753 0.87439 0.86729 0.85816 0.84986 0.85112 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 9 C 0.03 0.79 4.98 -27.89 -0.14 0.65 16 10 C -0.57 -11.44 5.82 37.16 0.22 -11.23 16 11 S 2.57 45.91 5.11 -107.50 -0.55 45.36 16 12 O -0.94 -20.04 17.04 -64.80 -1.10 -21.15 16 13 O -0.96 -18.85 18.08 -57.54 -1.04 -19.89 16 14 N -1.06 -12.66 5.60 31.22 0.17 -12.49 16 15 C 0.56 6.79 7.20 -10.99 -0.08 6.71 16 16 O -0.47 -7.51 9.78 -11.61 -0.11 -7.63 16 17 C -0.19 -1.42 6.19 -91.77 -0.57 -1.99 16 18 H 0.14 0.61 8.14 -51.93 -0.42 0.18 16 19 C -0.15 -0.90 9.58 -26.69 -0.26 -1.15 16 20 C -0.07 -0.56 6.04 -91.74 -0.55 -1.11 16 21 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 22 C -0.07 -0.77 4.38 -104.62 -0.46 -1.23 16 23 C -0.03 -0.38 6.15 -39.59 -0.24 -0.62 16 24 C -0.15 -2.15 10.03 -39.51 -0.40 -2.54 16 25 C 0.10 1.45 7.30 -39.42 -0.29 1.17 16 26 F -0.14 -2.19 17.27 2.25 0.04 -2.15 16 27 C -0.16 -1.99 10.03 -39.51 -0.40 -2.39 16 28 C -0.08 -0.86 9.73 -39.59 -0.39 -1.25 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 31 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 33 H 0.13 2.60 7.19 -51.93 -0.37 2.22 16 34 H 0.43 3.35 8.79 -34.47 -0.30 3.05 16 35 H 0.11 0.77 6.19 -51.93 -0.32 0.44 16 36 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.12 1.45 5.77 -52.49 -0.30 1.15 16 38 H 0.13 1.74 8.06 -52.48 -0.42 1.31 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -37.60 356.04 -10.12 -47.72 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.65 Total: 2.67 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -3.96 Total: -28.34 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.91 Total: -38.57 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -2.26 Total: -48.67 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 45.91 SS G_CDS: -0.55 Total: 45.36 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.60 -10.12 -47.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.393 kcal (2) G-P(sol) polarization free energy of solvation -37.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds