Wall clock time and date at job start Sat Apr 11 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.42106 * 110.54100 * 291.62280 * 11 10 9 13 13 O 1.42100 * 110.54266 * 68.37418 * 11 10 9 14 14 N 1.65599 * 104.44810 * 180.02562 * 11 10 9 15 15 C 1.34772 * 120.00110 * 64.99735 * 14 11 10 16 16 O 1.21284 * 120.00168 * 0.02562 * 15 14 11 17 17 C 1.50709 * 119.99747 * 179.97438 * 15 14 11 18 18 H 1.08997 * 115.54932 * 325.66877 * 17 15 14 19 19 C 1.53002 * 117.49560 * 111.37942 * 17 15 14 20 20 C 1.53004 * 117.49624 * 180.02562 * 17 15 14 21 21 H 1.08994 * 117.49765 * 0.02562 * 20 17 15 22 22 C 1.50698 * 117.49446 * 145.02160 * 20 17 15 23 23 C 1.38241 * 119.97314 * 59.73037 * 22 20 17 24 24 C 1.38206 * 120.02628 * 179.72303 * 23 22 20 25 25 C 1.38462 * 119.96899 * 0.56937 * 24 23 22 26 26 F 1.35096 * 120.02192 * 179.68538 * 25 24 23 27 27 C 1.38460 * 119.95176 * 359.70214 * 25 24 23 28 28 C 1.38199 * 119.97260 * 359.97438 * 27 25 24 29 29 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 31 31 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 34 34 H 0.97002 * 119.99347 * 244.99779 * 14 11 10 35 35 H 1.08992 * 117.49810 * 214.97729 * 19 17 15 36 36 H 1.09002 * 117.50130 * 0.02562 * 19 17 15 37 37 H 1.08003 * 119.99107 * 359.97438 * 23 22 20 38 38 H 1.08000 * 120.01501 * 180.29626 * 24 23 22 39 39 H 1.07996 * 120.01491 * 180.02562 * 27 25 24 40 40 H 1.07997 * 119.98860 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2330 -0.0002 12 8 0.6640 -5.4200 1.2366 13 8 0.6648 -5.4193 -1.2375 14 7 2.5206 -6.3927 0.0006 15 6 3.3463 -6.5124 1.0589 16 8 3.2233 -5.7713 2.0110 17 6 4.4218 -7.5682 1.0598 18 1 4.1651 -8.5012 0.5582 19 6 5.8748 -7.0964 0.9749 20 6 5.3266 -7.6539 2.2907 21 1 5.1437 -6.9470 3.0999 22 6 5.7952 -9.0216 2.7158 23 6 6.5382 -9.7982 1.8464 24 6 6.9734 -11.0504 2.2372 25 6 6.6550 -11.5316 3.4958 26 9 7.0745 -12.7581 3.8766 27 6 5.9060 -10.7551 4.3637 28 6 5.4776 -9.5006 3.9731 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5566 0.8903 31 1 0.6247 -2.5571 -0.8897 32 1 2.8720 -3.6043 -0.8894 33 1 2.8720 -3.6043 0.8906 34 1 2.6187 -6.9856 -0.7608 35 1 6.5743 -7.7191 0.4172 36 1 6.0529 -6.0225 0.9188 37 1 6.7821 -9.4247 0.8628 38 1 7.5579 -11.6550 1.5596 39 1 5.6574 -11.1293 5.3458 40 1 4.8931 -8.8949 4.6497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776116428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:41 Heat of formation + Delta-G solvation = -116.317217 kcal Electronic energy + Delta-G solvation = -26151.432841 eV Core-core repulsion = 21973.334404 eV Total energy + Delta-G solvation = -4178.098437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.28981 -40.81920 -39.53371 -36.97393 -36.61127 -35.75827 -34.57473 -34.26999 -31.63082 -31.08994 -30.67026 -25.59620 -25.06148 -24.31178 -23.26061 -22.03402 -21.47297 -20.70938 -19.49022 -18.38682 -18.11172 -17.75069 -16.79495 -16.67547 -16.29662 -16.07217 -15.98803 -15.39275 -15.22714 -15.11367 -14.80203 -14.03002 -13.79702 -13.76999 -13.64093 -13.34557 -13.05192 -12.92722 -12.77029 -12.56717 -12.15983 -12.00648 -11.87984 -11.76419 -11.50053 -11.14385 -11.09720 -11.01269 -10.96845 -10.60609 -10.54690 -10.37795 -10.26550 -10.04253 -9.58104 -8.90779 -8.72285 -8.47665 -6.49368 -4.22273 0.34433 0.60665 0.76276 1.82622 2.55541 2.96194 3.38094 3.40361 3.48111 3.59308 3.74595 3.83557 3.95294 4.13645 4.25876 4.27752 4.41393 4.44046 4.45832 4.55607 4.70676 4.75931 4.85533 4.97871 5.15629 5.26022 5.41444 5.44338 5.46105 5.52749 5.53759 5.61737 5.66844 5.79853 6.07254 6.26778 6.41128 6.51022 6.91847 7.02737 7.32731 7.92759 8.27555 8.70434 9.49731 10.90495 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.002163 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.031424 B =12942.253066 C =13603.930349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.016 3.984 3 Si 1.074 2.926 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.599 4.599 8 H 0.056 0.944 9 C 0.016 3.984 10 C -0.569 4.569 11 S 2.565 3.435 12 O -0.937 6.937 13 O -0.953 6.953 14 N -1.054 6.054 15 C 0.564 3.436 16 O -0.487 6.487 17 C -0.183 4.183 18 H 0.135 0.865 19 C -0.140 4.140 20 C -0.083 4.083 21 H 0.135 0.865 22 C -0.064 4.064 23 C -0.091 4.091 24 C -0.151 4.151 25 C 0.094 3.906 26 F -0.141 7.141 27 C -0.150 4.150 28 C -0.077 4.077 29 H 0.270 0.730 30 H 0.027 0.973 31 H 0.025 0.975 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.430 0.570 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.174 -22.825 2.375 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.189 4.189 3 Si 0.901 3.099 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.638 4.638 8 H 0.074 0.926 9 C -0.023 4.023 10 C -0.703 4.703 11 S 2.665 3.335 12 O -0.927 6.927 13 O -0.944 6.944 14 N -0.814 5.814 15 C 0.350 3.650 16 O -0.358 6.358 17 C -0.206 4.206 18 H 0.153 0.847 19 C -0.177 4.177 20 C -0.102 4.102 21 H 0.153 0.847 22 C -0.064 4.064 23 C -0.109 4.109 24 C -0.170 4.170 25 C 0.075 3.925 26 F -0.120 7.120 27 C -0.169 4.169 28 C -0.095 4.095 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.265 0.735 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.950 -20.929 3.113 25.908 hybrid contribution 0.835 -2.145 -0.445 2.345 sum 15.786 -23.074 2.668 28.084 Atomic orbital electron populations 1.70786 1.06862 1.30796 1.45479 1.25991 0.96546 1.02931 0.93424 0.83470 0.74861 0.74919 0.76614 1.20529 1.21233 1.21280 1.21805 0.94363 0.90552 1.57113 0.92605 1.19098 0.93306 0.92133 0.97755 1.30217 1.13426 1.15708 1.10956 1.06726 0.74980 0.77259 0.74500 1.93605 1.70250 1.84316 1.44559 1.93598 1.70469 1.85275 1.45047 1.55331 1.49060 1.50323 1.26723 1.19557 0.80809 0.83827 0.80832 1.90916 1.69349 1.43071 1.32497 1.22460 0.91816 1.00538 1.05782 0.84744 1.23265 0.92178 1.03144 0.99122 1.21146 1.00807 0.95508 0.92710 0.84719 1.19164 0.98449 0.94376 0.94390 1.20952 0.96900 0.93063 0.99940 1.21130 1.02956 0.97459 0.95411 1.17773 0.98934 0.81351 0.94478 1.91506 1.88361 1.40537 1.91552 1.21181 1.00016 0.95190 1.00491 1.20939 0.98024 0.94732 0.95829 0.91942 0.95486 0.95683 0.85883 0.84944 0.73497 0.86823 0.86897 0.84654 0.84596 0.84488 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.65 55.43 0.76 -26.84 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 24.81 29.90 -169.99 -5.08 19.73 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.60 -16.79 9.11 -34.44 -0.31 -17.10 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.41 4.29 -27.88 -0.12 0.30 16 10 C -0.57 -11.08 5.82 37.16 0.22 -10.86 16 11 S 2.57 45.15 5.11 -107.50 -0.55 44.60 16 12 O -0.94 -20.07 17.04 -64.80 -1.10 -21.17 16 13 O -0.95 -18.35 18.08 -57.54 -1.04 -19.39 16 14 N -1.05 -12.61 5.60 31.22 0.17 -12.44 16 15 C 0.56 6.99 7.35 -10.98 -0.08 6.91 16 16 O -0.49 -8.01 14.36 -11.61 -0.17 -8.18 16 17 C -0.18 -1.46 5.82 -91.76 -0.53 -2.00 16 18 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.14 -0.87 9.56 -26.70 -0.26 -1.13 16 20 C -0.08 -0.65 5.56 -91.74 -0.51 -1.16 16 21 H 0.13 1.22 7.67 -51.93 -0.40 0.82 16 22 C -0.06 -0.46 5.61 -104.62 -0.59 -1.05 16 23 C -0.09 -0.55 9.29 -39.59 -0.37 -0.92 16 24 C -0.15 -1.00 10.03 -39.51 -0.40 -1.39 16 25 C 0.09 0.75 7.30 -39.42 -0.29 0.46 16 26 F -0.14 -1.26 17.27 2.25 0.04 -1.22 16 27 C -0.15 -1.10 10.03 -39.51 -0.40 -1.50 16 28 C -0.08 -0.57 9.73 -39.59 -0.39 -0.96 16 29 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 30 H 0.03 0.72 8.01 -51.93 -0.42 0.31 16 31 H 0.03 0.65 8.01 -51.93 -0.42 0.23 16 32 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 33 H 0.13 2.54 7.19 -51.92 -0.37 2.17 16 34 H 0.43 3.32 8.79 -34.46 -0.30 3.01 16 35 H 0.11 0.42 6.18 -51.93 -0.32 0.10 16 36 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.14 0.51 6.02 -52.48 -0.32 0.20 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -37.85 362.73 -10.20 -48.04 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.58 Total: 1.44 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: -4.11 Total: -30.03 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.93 Total: -39.28 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -2.31 Total: -48.74 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.73 kcal Atomic # 16 Polarization: 45.15 SS G_CDS: -0.55 Total: 44.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.85 -10.20 -48.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.273 kcal (2) G-P(sol) polarization free energy of solvation -37.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds