Wall clock time and date at job start Sat Apr 11 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 S 1.81396 * 109.47142 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54398 * 291.62648 * 11 10 9 13 13 O 1.42095 * 110.54373 * 68.37936 * 11 10 9 14 14 N 1.65608 * 104.44869 * 180.02562 * 11 10 9 15 15 C 1.34779 * 119.99743 * 64.99864 * 14 11 10 16 16 O 1.21280 * 120.00343 * 0.02562 * 15 14 11 17 17 C 1.50701 * 119.99615 * 179.97438 * 15 14 11 18 18 H 1.08999 * 115.54746 * 34.27900 * 17 15 14 19 19 C 1.52998 * 117.49814 * 248.60874 * 17 15 14 20 20 C 1.52998 * 60.00192 * 252.51213 * 19 17 15 21 21 H 1.09000 * 117.49870 * 107.48438 * 20 19 17 22 22 C 1.50697 * 117.49807 * 252.51244 * 20 19 17 23 23 C 1.38241 * 119.97734 * 8.34643 * 22 20 19 24 24 C 1.38202 * 120.02696 * 179.77020 * 23 22 20 25 25 C 1.38460 * 119.97215 * 0.50015 * 24 23 22 26 26 F 1.35102 * 120.02560 * 179.77112 * 25 24 23 27 27 C 1.38460 * 119.94770 * 359.75217 * 25 24 23 28 28 C 1.38196 * 119.97566 * 359.97438 * 27 25 24 29 29 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 31 31 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 32 32 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 33 33 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 34 34 H 0.96992 * 119.99774 * 245.00207 * 14 11 10 35 35 H 1.08999 * 117.49888 * 0.02562 * 19 17 15 36 36 H 1.09001 * 117.49979 * 144.99889 * 19 17 15 37 37 H 1.08000 * 119.98510 * 0.02562 * 23 22 20 38 38 H 1.07997 * 120.01556 * 180.25695 * 24 23 22 39 39 H 1.08004 * 120.01167 * 180.02562 * 27 25 24 40 40 H 1.08000 * 119.98756 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 16 1.3385 -5.2329 0.0168 12 8 0.6642 -5.4145 1.2544 13 8 0.6649 -5.4248 -1.2195 14 7 2.5208 -6.3926 0.0225 15 6 3.3467 -6.5076 1.0814 16 8 3.2238 -5.7622 2.0302 17 6 4.4221 -7.5633 1.0869 18 1 4.8692 -7.7839 0.1176 19 6 4.2701 -8.7215 2.0749 20 6 5.3276 -7.6429 2.3176 21 1 5.1454 -6.9317 3.1233 22 6 6.7698 -8.0203 2.0972 23 6 7.0854 -9.2399 1.5278 24 6 8.4075 -9.5850 1.3208 25 6 9.4165 -8.7132 1.6934 26 9 10.7095 -9.0515 1.4957 27 6 9.0994 -7.4942 2.2684 28 6 7.7764 -7.1488 2.4692 29 1 -0.4850 0.8400 0.0004 30 1 0.6245 -2.5529 0.8956 31 1 0.6244 -2.5609 -0.8844 32 1 2.8721 -3.6081 -0.8798 33 1 2.8721 -3.6002 0.9002 34 1 2.6188 -6.9889 -0.7361 35 1 3.3919 -8.7203 2.7206 36 1 4.6171 -9.7043 1.7556 37 1 6.2982 -9.9214 1.2409 38 1 8.6536 -10.5361 0.8721 39 1 9.8856 -6.8131 2.5590 40 1 7.5289 -6.1982 2.9181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776116429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:45 Heat of formation + Delta-G solvation = -112.707516 kcal Electronic energy + Delta-G solvation = -26178.802117 eV Core-core repulsion = 22000.860208 eV Total energy + Delta-G solvation = -4177.941908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.25517 -40.76680 -39.48835 -36.88998 -36.54749 -35.65153 -34.48315 -33.91267 -31.59716 -31.20263 -30.63501 -25.73408 -25.38162 -24.28045 -23.22279 -21.75155 -21.38568 -20.66147 -19.36685 -18.33741 -18.05832 -17.64689 -16.63742 -16.56952 -16.22235 -15.95466 -15.78399 -15.29249 -15.14883 -15.01635 -14.70015 -14.55475 -13.99502 -13.72618 -13.47269 -13.31965 -13.01187 -12.72946 -12.58063 -12.44576 -11.96898 -11.82930 -11.75843 -11.65230 -11.46839 -11.12105 -11.09455 -11.02303 -10.96574 -10.87328 -10.45356 -10.38102 -10.28774 -9.73105 -9.54735 -9.20236 -8.87217 -8.51059 -6.13338 -4.18898 0.44298 0.65173 0.79685 1.89153 2.63157 3.01821 3.26201 3.32467 3.35693 3.52495 3.79302 3.88078 4.06173 4.16854 4.29413 4.31179 4.36474 4.45839 4.52448 4.61202 4.74072 4.79525 4.92760 5.01562 5.18848 5.22029 5.46109 5.47922 5.55325 5.58538 5.65317 5.69788 5.70274 5.83493 6.10589 6.43301 6.44526 6.58967 7.26601 7.33210 7.39246 7.79668 8.15308 8.84069 9.45778 10.97772 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.002514 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.966928 B =11133.867332 C =12838.497793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.575 4.575 11 S 2.566 3.434 12 O -0.938 6.938 13 O -0.954 6.954 14 N -1.054 6.054 15 C 0.564 3.436 16 O -0.487 6.487 17 C -0.183 4.183 18 H 0.135 0.865 19 C -0.141 4.141 20 C -0.083 4.083 21 H 0.135 0.865 22 C -0.064 4.064 23 C -0.091 4.091 24 C -0.151 4.151 25 C 0.094 3.906 26 F -0.141 7.141 27 C -0.150 4.150 28 C -0.077 4.077 29 H 0.265 0.735 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.429 0.571 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.378 -21.727 2.018 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.710 4.710 11 S 2.666 3.334 12 O -0.928 6.928 13 O -0.944 6.944 14 N -0.815 5.815 15 C 0.350 3.650 16 O -0.358 6.358 17 C -0.206 4.206 18 H 0.153 0.847 19 C -0.178 4.178 20 C -0.101 4.101 21 H 0.153 0.847 22 C -0.064 4.064 23 C -0.109 4.109 24 C -0.170 4.170 25 C 0.075 3.925 26 F -0.120 7.120 27 C -0.169 4.169 28 C -0.095 4.095 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.264 0.736 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 15.237 -21.317 2.735 26.345 hybrid contribution 1.328 0.831 -0.662 1.701 sum 16.565 -20.486 2.073 26.427 Atomic orbital electron populations 1.69950 1.06116 1.27253 1.49522 1.25064 0.94994 0.99560 0.94854 0.86445 0.79742 0.82744 0.78212 1.20462 1.20976 1.19710 1.20973 0.93099 0.89575 1.52229 0.91964 1.18994 0.92617 0.90325 0.99028 1.30339 1.13708 1.16150 1.10774 1.06727 0.74965 0.77247 0.74480 1.93596 1.70263 1.84431 1.44515 1.93592 1.70471 1.85225 1.45139 1.55371 1.49045 1.50147 1.26908 1.19535 0.80755 0.83889 0.80864 1.90914 1.69475 1.42557 1.32886 1.22471 1.00076 1.00134 0.97908 0.84683 1.23235 1.01207 0.93336 1.00019 1.21132 0.87731 1.02588 0.98682 0.84717 1.19164 0.93360 0.94402 0.99450 1.20945 0.95712 0.96230 0.97993 1.21122 0.92324 1.00422 1.03116 1.17777 0.78386 0.95167 1.01218 1.91507 1.34862 1.92529 1.93072 1.21189 0.97957 0.95991 1.01717 1.20945 0.91028 0.99575 0.97936 0.92492 0.94564 0.94758 0.86032 0.85065 0.73581 0.87002 0.86920 0.84689 0.84634 0.84476 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 10 C -0.57 -11.23 5.82 37.16 0.22 -11.02 16 11 S 2.57 45.43 5.11 -107.50 -0.55 44.88 16 12 O -0.94 -20.09 17.04 -64.80 -1.10 -21.20 16 13 O -0.95 -18.52 18.08 -57.54 -1.04 -19.56 16 14 N -1.05 -12.67 5.60 31.22 0.17 -12.50 16 15 C 0.56 7.01 7.35 -10.98 -0.08 6.93 16 16 O -0.49 -8.00 14.36 -11.60 -0.17 -8.17 16 17 C -0.18 -1.47 5.82 -91.77 -0.53 -2.00 16 18 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 19 C -0.14 -0.91 9.56 -26.73 -0.26 -1.17 16 20 C -0.08 -0.65 5.55 -91.77 -0.51 -1.16 16 21 H 0.14 1.22 7.67 -51.93 -0.40 0.83 16 22 C -0.06 -0.47 5.61 -104.62 -0.59 -1.05 16 23 C -0.09 -0.56 9.30 -39.59 -0.37 -0.93 16 24 C -0.15 -1.02 10.03 -39.51 -0.40 -1.41 16 25 C 0.09 0.77 7.30 -39.42 -0.29 0.48 16 26 F -0.14 -1.30 17.27 2.25 0.04 -1.26 16 27 C -0.15 -1.13 10.03 -39.51 -0.40 -1.53 16 28 C -0.08 -0.58 9.73 -39.59 -0.39 -0.96 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 33 H 0.13 2.51 7.19 -51.92 -0.37 2.14 16 34 H 0.43 3.34 8.79 -34.47 -0.30 3.04 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.11 0.43 6.17 -51.93 -0.32 0.11 16 37 H 0.14 0.52 6.01 -52.49 -0.32 0.21 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 364.03 15.07 5.49 5.49 Total: -1.00 -37.05 364.03 -10.21 -47.27 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.63 Total: 0.97 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -4.13 Total: -26.42 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.91 Total: -38.27 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -2.31 Total: -48.92 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 45.43 SS G_CDS: -0.55 Total: 44.88 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.05 -10.21 -47.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.439 kcal (2) G-P(sol) polarization free energy of solvation -37.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds