Wall clock time and date at job start Sat Apr 11 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47153 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54033 * 291.62070 * 11 10 9 13 13 O 1.42093 * 110.54359 * 68.37403 * 11 10 9 14 14 N 1.65606 * 104.44724 * 180.02562 * 11 10 9 15 15 C 1.34773 * 120.00253 * 64.99636 * 14 11 10 16 16 O 1.21286 * 120.00222 * 0.02562 * 15 14 11 17 17 C 1.50703 * 120.00239 * 180.02562 * 15 14 11 18 18 H 1.09003 * 115.54470 * 325.58459 * 17 15 14 19 19 C 1.52990 * 117.49835 * 111.25270 * 17 15 14 20 20 C 1.52989 * 117.50284 * 179.91615 * 17 15 14 21 21 H 1.08997 * 117.50472 * 144.99340 * 20 17 15 22 22 C 1.50706 * 117.49840 * 359.97438 * 20 17 15 23 23 C 1.38242 * 119.97260 * 299.72664 * 22 20 17 24 24 C 1.38201 * 120.02450 * 179.76769 * 23 22 20 25 25 C 1.38453 * 119.97502 * 0.50518 * 24 23 22 26 26 F 1.35096 * 120.02970 * 179.76793 * 25 24 23 27 27 C 1.38468 * 119.94897 * 359.74790 * 25 24 23 28 28 C 1.38195 * 119.97247 * 359.97438 * 27 25 24 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 31 31 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 32 32 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 33 33 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 34 34 H 0.97001 * 119.99859 * 245.00017 * 14 11 10 35 35 H 1.09006 * 117.50012 * 214.98429 * 19 17 15 36 36 H 1.09000 * 117.50179 * 0.02562 * 19 17 15 37 37 H 1.08003 * 119.99002 * 0.02562 * 23 22 20 38 38 H 1.07999 * 120.01482 * 180.25728 * 24 23 22 39 39 H 1.08000 * 120.01385 * 179.97438 * 27 25 24 40 40 H 1.07996 * 119.99011 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6639 -5.4201 1.2355 13 8 0.6646 -5.4193 -1.2385 14 7 2.5204 -6.3928 -0.0005 15 6 3.3462 -6.5126 1.0578 16 8 3.2232 -5.7714 2.0100 17 6 4.4224 -7.5676 1.0583 18 1 4.1657 -8.5011 0.5574 19 6 5.8748 -7.0950 0.9708 20 6 5.3287 -7.6517 2.2879 21 1 5.6684 -8.6404 2.5962 22 6 5.0774 -6.6728 3.4059 23 6 5.1740 -5.3142 3.1690 24 6 4.9390 -4.4155 4.1923 25 6 4.6171 -4.8764 5.4575 26 9 4.3918 -3.9989 6.4597 27 6 4.5258 -6.2375 5.6948 28 6 4.7555 -7.1342 4.6687 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5571 0.8897 31 1 0.6240 -2.5568 -0.8903 32 1 2.8719 -3.6044 -0.8906 33 1 2.8719 -3.6044 0.8894 34 1 2.6185 -6.9858 -0.7618 35 1 6.5740 -7.7178 0.4126 36 1 6.0521 -6.0211 0.9133 37 1 5.4290 -4.9549 2.1830 38 1 5.0104 -3.3541 4.0060 39 1 4.2751 -6.5983 6.6815 40 1 4.6840 -8.1959 4.8534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776116430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:48 Heat of formation + Delta-G solvation = -100.207566 kcal Electronic energy + Delta-G solvation = -27703.454005 eV Core-core repulsion = 23526.054135 eV Total energy + Delta-G solvation = -4177.399870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.75077 -40.94042 -38.82583 -36.82909 -36.45344 -35.63173 -34.45994 -33.91306 -31.20514 -31.09050 -30.19533 -25.73474 -25.30069 -24.01374 -22.87623 -21.72158 -21.39316 -20.44663 -19.33540 -18.25283 -17.67084 -17.45384 -16.60271 -16.28582 -15.81126 -15.70753 -15.44082 -15.29314 -14.99788 -14.74897 -14.55481 -14.52872 -13.76221 -13.55320 -13.45967 -13.10810 -12.98126 -12.54133 -12.41871 -12.15576 -11.83262 -11.74439 -11.73047 -11.63228 -11.12182 -11.07742 -11.01802 -10.98228 -10.83622 -10.74800 -10.43688 -10.39345 -10.21704 -9.73375 -9.21135 -8.89589 -8.50609 -8.25981 -6.13058 -4.18811 0.47083 1.11963 1.35159 1.96830 2.69445 3.27300 3.29084 3.32232 3.33842 3.76471 3.88014 4.10030 4.24164 4.36372 4.37479 4.41985 4.54228 4.64229 4.70601 4.91594 4.95776 4.97358 5.19421 5.22260 5.31704 5.33825 5.47627 5.56552 5.68025 5.68408 5.92434 6.04485 6.21693 6.30616 6.42080 6.50763 6.62215 6.96898 7.26393 7.33316 7.45923 7.79139 8.15104 8.83621 9.45776 10.98047 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009448 B = 0.004270 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.017365 B = 6556.466888 C = 8386.690244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.030 3.970 10 C -0.575 4.575 11 S 2.564 3.436 12 O -0.936 6.936 13 O -0.956 6.956 14 N -1.055 6.055 15 C 0.555 3.445 16 O -0.472 6.472 17 C -0.187 4.187 18 H 0.136 0.864 19 C -0.145 4.145 20 C -0.076 4.076 21 H 0.127 0.873 22 C -0.067 4.067 23 C -0.035 4.035 24 C -0.152 4.152 25 C 0.101 3.899 26 F -0.143 7.143 27 C -0.162 4.162 28 C -0.082 4.082 29 H 0.266 0.734 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.428 0.572 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.754 -18.765 3.216 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.709 4.709 11 S 2.664 3.336 12 O -0.926 6.926 13 O -0.946 6.946 14 N -0.816 5.816 15 C 0.342 3.658 16 O -0.343 6.343 17 C -0.210 4.210 18 H 0.154 0.846 19 C -0.182 4.182 20 C -0.094 4.094 21 H 0.145 0.855 22 C -0.067 4.067 23 C -0.053 4.053 24 C -0.171 4.171 25 C 0.081 3.919 26 F -0.122 7.122 27 C -0.181 4.181 28 C -0.100 4.100 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.262 0.738 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.542 -18.306 3.981 23.116 hybrid contribution 0.727 0.981 -0.413 1.289 sum 14.268 -17.325 3.569 22.726 Atomic orbital electron populations 1.69943 1.06126 1.27363 1.49349 1.25056 0.94972 0.99510 0.94825 0.86521 0.79512 0.82489 0.78709 1.21031 1.20021 1.20078 1.20911 0.92989 0.89562 1.52451 0.92068 1.18977 0.92608 0.90305 0.98982 1.30336 1.13718 1.16280 1.10589 1.06746 0.75047 0.77293 0.74486 1.93606 1.70241 1.84308 1.44494 1.93589 1.70536 1.85332 1.45152 1.55457 1.49134 1.50304 1.26713 1.19697 0.81133 0.84094 0.80904 1.91000 1.68539 1.42991 1.31733 1.22424 0.91805 1.00704 1.06042 0.84615 1.23256 0.92469 1.03111 0.99395 1.21076 1.01052 1.00024 0.87285 0.85527 1.18855 1.01453 0.93090 0.93316 1.20644 0.94861 0.91992 0.97824 1.21078 1.03104 1.01243 0.91649 1.17720 1.01651 0.87106 0.85377 1.91486 1.92242 1.68786 1.59675 1.20963 1.05015 0.91391 1.00702 1.20609 0.98510 0.99277 0.91629 0.92429 0.94629 0.94820 0.86114 0.85165 0.73755 0.86677 0.87336 0.85799 0.84747 0.85173 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.78 4.98 -27.89 -0.14 0.65 16 10 C -0.57 -11.14 5.82 37.16 0.22 -10.92 16 11 S 2.56 46.01 5.11 -107.50 -0.55 45.46 16 12 O -0.94 -20.52 17.04 -64.80 -1.10 -21.63 16 13 O -0.96 -18.87 18.08 -57.54 -1.04 -19.91 16 14 N -1.06 -12.70 5.60 31.22 0.17 -12.53 16 15 C 0.56 6.82 7.22 -10.99 -0.08 6.74 16 16 O -0.47 -7.54 9.84 -11.61 -0.11 -7.65 16 17 C -0.19 -1.42 6.19 -91.78 -0.57 -1.99 16 18 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 19 C -0.15 -0.87 9.58 -26.70 -0.26 -1.12 16 20 C -0.08 -0.57 6.04 -91.74 -0.55 -1.12 16 21 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 22 C -0.07 -0.73 4.35 -104.61 -0.46 -1.19 16 23 C -0.04 -0.44 6.19 -39.59 -0.25 -0.68 16 24 C -0.15 -2.14 10.03 -39.52 -0.40 -2.54 16 25 C 0.10 1.44 7.30 -39.42 -0.29 1.15 16 26 F -0.14 -2.19 17.27 2.25 0.04 -2.15 16 27 C -0.16 -1.96 10.03 -39.51 -0.40 -2.36 16 28 C -0.08 -0.88 9.73 -39.59 -0.39 -1.26 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.12 2.00 8.14 -51.92 -0.42 1.57 16 33 H 0.13 2.44 7.19 -51.93 -0.37 2.07 16 34 H 0.43 3.36 8.79 -34.47 -0.30 3.06 16 35 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 0.73 6.17 -51.93 -0.32 0.41 16 37 H 0.12 1.38 5.79 -52.48 -0.30 1.08 16 38 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 39 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -37.66 356.12 -10.12 -47.78 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.65 Total: 2.60 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -3.96 Total: -27.77 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.91 Total: -38.37 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -2.26 Total: -49.19 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 46.01 SS G_CDS: -0.55 Total: 45.46 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.66 -10.12 -47.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.430 kcal (2) G-P(sol) polarization free energy of solvation -37.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds