Wall clock time and date at job start Sat Apr 11 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99861 * 2 1 4 4 O 1.20828 * 119.99972 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00024 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46862 * 180.02562 * 5 3 2 7 7 C 1.33291 * 120.00121 * 264.53322 * 6 5 3 8 8 H 1.08002 * 120.00028 * 139.66537 * 7 6 5 9 9 C 1.46784 * 120.00324 * 319.67254 * 7 6 5 10 10 N 1.29318 * 120.00411 * 167.84567 * 9 7 6 11 11 Si 1.86801 * 120.00000 * 347.84322 * 9 7 6 12 12 H 1.48498 * 109.46996 * 90.85723 * 11 9 7 13 13 H 1.48495 * 109.47697 * 210.86125 * 11 9 7 14 14 H 1.48506 * 109.47061 * 330.86314 * 11 9 7 15 15 C 1.34774 * 120.00134 * 84.53938 * 6 5 3 16 16 O 1.21548 * 120.00067 * 4.73352 * 15 6 5 17 17 C 1.47121 * 120.00095 * 184.73074 * 15 6 5 18 18 C 1.39917 * 120.19505 * 316.16982 * 17 15 6 19 19 C 1.37579 * 119.94611 * 179.72366 * 18 17 15 20 20 N 1.48017 * 119.83002 * 180.27567 * 19 18 17 21 21 O 1.31701 * 119.99896 * 0.26175 * 20 19 18 22 22 O 1.31703 * 119.99996 * 180.25565 * 20 19 18 23 23 C 1.38963 * 120.33856 * 0.53251 * 19 18 17 24 24 F 1.35096 * 119.80580 * 179.71699 * 23 19 18 25 25 C 1.38242 * 120.38947 * 359.44564 * 23 19 18 26 26 C 1.38826 * 120.05000 * 0.29860 * 25 23 19 27 27 N 1.38804 * 120.16904 * 179.97438 * 26 25 23 28 28 H 1.08999 * 109.47454 * 300.00026 * 1 2 3 29 29 H 1.08999 * 109.47502 * 60.00017 * 1 2 3 30 30 H 1.09005 * 109.46892 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46741 * 60.00579 * 5 3 2 32 32 H 1.08995 * 109.47331 * 300.00387 * 5 3 2 33 33 H 0.96999 * 120.00287 * 179.97438 * 10 9 7 34 34 H 1.08001 * 120.02404 * 359.97438 * 18 17 15 35 35 H 1.08005 * 119.97847 * 180.26885 * 25 23 19 36 36 H 0.97002 * 120.00127 * 353.71871 * 27 26 25 37 37 H 0.97004 * 119.99846 * 173.71656 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.2764 3.2881 -1.1477 8 1 3.9603 4.3070 -1.3159 9 6 5.0306 2.5731 -2.1844 10 7 5.1156 3.0649 -3.3773 11 14 5.8677 0.9528 -1.7803 12 1 4.9359 -0.1691 -2.0605 13 1 7.0869 0.8038 -2.6147 14 1 6.2455 0.9354 -0.3442 15 6 4.0657 3.3573 1.1631 16 8 3.8809 2.7811 2.2173 17 6 4.3811 4.7943 1.1558 18 6 5.3940 5.2881 0.3264 19 6 5.6809 6.6336 0.3194 20 7 6.7489 7.1542 -0.5635 21 8 7.4182 6.3306 -1.3434 22 8 7.0297 8.4409 -0.5692 23 6 4.9768 7.5058 1.1408 24 9 5.2714 8.8242 1.1295 25 6 3.9730 7.0330 1.9654 26 6 3.6665 5.6791 1.9815 27 7 2.6595 5.2017 2.8089 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9563 0.7808 -0.8892 32 1 3.9557 0.7810 0.8907 33 1 5.6143 2.5926 -4.0623 34 1 5.9475 4.6141 -0.3107 35 1 3.4271 7.7174 2.5980 36 1 2.2300 5.7967 3.4433 37 1 2.3851 4.2729 2.7527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801909045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:15 Heat of formation + Delta-G solvation = -82.625205 kcal Electronic energy + Delta-G solvation = -30644.911964 eV Core-core repulsion = 25921.981308 eV Total energy + Delta-G solvation = -4722.930656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.095 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -49.11041 -40.59411 -39.89595 -38.60318 -37.74389 -36.11656 -35.40455 -34.43047 -33.77190 -32.60019 -31.25253 -29.96010 -28.87871 -26.75538 -25.59710 -25.06553 -23.46287 -22.31130 -21.10043 -19.81181 -18.61441 -18.11953 -17.92258 -17.61140 -17.27126 -16.89184 -16.68778 -16.10316 -16.07800 -15.60890 -15.51836 -15.25993 -15.00016 -14.93733 -14.47317 -13.92595 -13.68660 -13.43206 -13.24895 -13.04147 -12.93155 -12.58066 -12.54887 -12.07826 -11.80562 -11.79432 -11.38048 -10.91293 -10.73947 -10.71389 -10.54810 -10.54124 -10.34901 -10.10608 -10.09820 -9.65224 -9.19408 -8.95583 -8.36305 -7.98119 -6.86617 -4.31438 -0.11950 0.91354 1.50800 1.64371 2.61224 2.69950 2.77676 2.96731 3.01884 3.15179 3.47977 3.71373 3.76012 3.94125 3.97674 4.46112 4.55485 4.93597 4.98912 5.19356 5.23779 5.27555 5.33404 5.38368 5.44867 5.61279 5.65820 5.83176 5.94559 6.01257 6.27371 6.58535 6.62365 6.74941 7.13095 7.32324 7.49107 7.61504 7.95966 8.14745 8.39106 8.87696 9.30890 10.17553 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011915 B = 0.005070 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.341695 B = 5521.576361 C = 7220.849885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.367 6.367 3 C 0.452 3.548 4 O -0.493 6.493 5 C 0.096 3.904 6 N -0.401 5.401 7 C -0.408 4.408 8 H 0.109 0.891 9 C 0.080 3.920 10 N -0.798 5.798 11 Si 0.867 3.133 12 H -0.264 1.264 13 H -0.273 1.273 14 H -0.249 1.249 15 C 0.526 3.474 16 O -0.592 6.592 17 C -0.181 4.181 18 C 0.085 3.915 19 C -0.114 4.114 20 N 0.004 4.996 21 O -0.173 6.173 22 O -0.204 6.204 23 C 0.224 3.776 24 F -0.105 7.105 25 C -0.253 4.253 26 C 0.331 3.669 27 N -0.829 5.829 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.290 0.710 34 H 0.188 0.812 35 H 0.156 0.844 36 H 0.403 0.597 37 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 -1.752 8.660 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.292 3.708 4 O -0.378 6.378 5 C -0.028 4.028 6 N -0.116 5.116 7 C -0.536 4.536 8 H 0.126 0.874 9 C -0.140 4.140 10 N -0.426 5.426 11 Si 0.692 3.308 12 H -0.190 1.190 13 H -0.199 1.199 14 H -0.172 1.172 15 C 0.318 3.682 16 O -0.479 6.479 17 C -0.190 4.190 18 C 0.064 3.936 19 C -0.206 4.206 20 N 0.475 4.525 21 O -0.365 6.365 22 O -0.389 6.389 23 C 0.202 3.798 24 F -0.083 7.083 25 C -0.278 4.278 26 C 0.214 3.786 27 N -0.364 5.364 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.205 0.795 35 H 0.174 0.826 36 H 0.232 0.768 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.459 -1.893 9.271 11.456 hybrid contribution 0.084 -0.384 -0.408 0.566 sum -6.375 -2.277 8.863 11.153 Atomic orbital electron populations 1.23161 0.77335 1.03020 1.02268 1.86533 1.22808 1.34317 1.84755 1.24670 0.92682 0.81282 0.72135 1.90609 1.66631 1.36278 1.44265 1.21692 0.87048 0.88810 1.05242 1.41971 1.54720 1.08285 1.06654 1.19905 1.38928 1.01363 0.93363 0.87412 1.27031 0.94474 0.98171 0.94334 1.68621 1.32788 1.38886 1.02266 0.87100 0.80120 0.82385 0.81177 1.19048 1.19920 1.17202 1.17455 0.81522 0.85881 0.83383 1.90621 1.56957 1.69490 1.30790 1.19144 1.01701 0.94692 1.03473 1.21414 0.91360 0.91458 0.89327 1.20021 1.00249 0.94955 1.05361 1.50063 1.00241 1.02652 0.99506 1.96310 1.50441 1.52701 1.37036 1.96255 1.74239 0.92590 1.75810 1.17051 0.92530 0.77520 0.92733 1.91633 1.91660 1.30508 1.94503 1.20261 1.04369 0.94729 1.08411 1.17590 0.84728 0.90512 0.85743 1.42751 1.37578 1.16394 1.39664 0.92296 0.92135 0.88588 0.87416 0.86667 0.89704 0.79509 0.82645 0.76821 0.74583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -6.04 10.57 -39.26 -0.41 -6.45 16 3 C 0.45 8.78 7.99 36.01 0.29 9.07 16 4 O -0.49 -10.65 16.05 -18.75 -0.30 -10.95 16 5 C 0.10 1.90 4.50 -5.19 -0.02 1.87 16 6 N -0.40 -8.67 1.72 -115.88 -0.20 -8.87 16 7 C -0.41 -9.58 7.27 -13.47 -0.10 -9.68 16 8 H 0.11 2.77 6.74 -52.49 -0.35 2.42 16 9 C 0.08 1.87 5.58 -15.16 -0.08 1.78 16 10 N -0.80 -19.80 13.88 56.00 0.78 -19.03 16 11 Si 0.87 17.35 24.84 -169.99 -4.22 13.12 16 12 H -0.26 -4.96 6.72 56.52 0.38 -4.58 16 13 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 14 H -0.25 -4.87 7.07 56.52 0.40 -4.47 16 15 C 0.53 10.87 6.58 -12.66 -0.08 10.78 16 16 O -0.59 -12.44 14.91 5.32 0.08 -12.36 16 17 C -0.18 -3.38 5.21 -104.79 -0.55 -3.92 16 18 C 0.09 1.65 7.38 -39.19 -0.29 1.36 16 19 C -0.11 -2.15 6.88 -79.92 -0.55 -2.70 16 20 N 0.00 0.08 4.98 33.98 0.17 0.25 16 21 O -0.17 -3.90 19.13 -31.57 -0.60 -4.51 16 22 O -0.20 -4.35 18.05 -31.57 -0.57 -4.92 16 23 C 0.22 3.63 7.26 -39.31 -0.29 3.34 16 24 F -0.11 -1.71 15.36 2.25 0.03 -1.67 16 25 C -0.25 -3.39 9.85 -39.36 -0.39 -3.78 16 26 C 0.33 5.02 6.74 -83.62 -0.56 4.46 16 27 N -0.83 -10.45 8.83 32.55 0.29 -10.16 16 28 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.11 2.11 3.14 -51.93 -0.16 1.94 16 32 H 0.12 2.07 7.53 -51.93 -0.39 1.68 16 33 H 0.29 6.62 8.26 -40.82 -0.34 6.28 16 34 H 0.19 3.93 5.99 -52.49 -0.31 3.61 16 35 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.40 3.42 8.84 -40.82 -0.36 3.06 16 37 H 0.42 6.16 6.63 -40.82 -0.27 5.88 16 LS Contribution 334.60 15.07 5.04 5.04 Total: -1.00 -29.37 334.60 -4.18 -33.54 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -2.70 Total: 12.86 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: -1.56 Total: 14.10 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 1.04 Total: -37.81 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -1.81 Total: -39.19 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.03 Total: -1.67 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -4.22 Total: 13.12 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.37 -4.18 -33.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801909045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.083 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds