Wall clock time and date at job start Sat Apr 11 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86807 * 119.99835 * 2 1 4 4 H 1.48505 * 109.46895 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46679 * 299.99427 * 3 2 1 6 6 H 1.48498 * 109.47054 * 59.99434 * 3 2 1 7 7 C 1.39942 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00442 * 162.28674 * 7 2 1 9 9 C 1.41395 * 120.00072 * 342.29282 * 7 2 1 10 10 C 1.40727 * 120.24423 * 335.24638 * 9 7 2 11 11 C 1.37596 * 119.74763 * 179.97438 * 10 9 7 12 12 C 1.38660 * 120.24667 * 359.74939 * 11 10 9 13 13 C 1.38605 * 120.50034 * 0.51109 * 12 11 10 14 14 S 1.76202 * 119.87708 * 179.76377 * 13 12 11 15 15 O 1.42095 * 106.40522 * 156.18490 * 14 13 12 16 16 O 1.42103 * 106.39832 * 23.26300 * 14 13 12 17 17 N 1.65601 * 107.21896 * 269.72713 * 14 13 12 18 18 C 1.46493 * 120.00241 * 64.99310 * 17 14 13 19 19 C 1.53002 * 109.46978 * 165.00164 * 18 17 14 20 20 C 1.53007 * 109.47094 * 180.02562 * 19 18 17 21 21 H 1.09003 * 110.38954 * 52.76739 * 20 19 18 22 22 C 1.53704 * 110.34213 * 175.00181 * 20 19 18 23 23 C 1.52942 * 112.49284 * 116.04526 * 22 20 19 24 24 C 1.55155 * 108.95825 * 30.09928 * 23 22 20 25 25 S 1.83395 * 110.33846 * 290.54700 * 20 19 18 26 26 C 1.37636 * 120.24837 * 359.48784 * 13 12 11 27 27 H 0.96996 * 120.00651 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.12729 * 359.95955 * 10 9 7 29 29 H 1.08002 * 119.88018 * 179.97438 * 11 10 9 30 30 H 1.08004 * 119.74511 * 180.25163 * 12 11 10 31 31 H 0.97004 * 119.99793 * 244.99783 * 17 14 13 32 32 H 1.09008 * 109.47111 * 45.00696 * 18 17 14 33 33 H 1.09003 * 109.47579 * 285.00433 * 18 17 14 34 34 H 1.09000 * 109.47355 * 60.00401 * 19 18 17 35 35 H 1.08997 * 109.47307 * 299.99828 * 19 18 17 36 36 H 1.08995 * 108.88614 * 236.83686 * 22 20 19 37 37 H 1.09003 * 108.88608 * 355.25364 * 22 20 19 38 38 H 1.08993 * 109.60562 * 150.02812 * 23 22 20 39 39 H 1.08999 * 109.60527 * 270.17433 * 23 22 20 40 40 H 1.08998 * 111.12935 * 76.47521 * 24 23 22 41 41 H 1.09004 * 111.12955 * 200.60709 * 24 23 22 42 42 H 1.08004 * 120.12545 * 180.23644 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8834 2.3964 -1.2126 6 1 1.8833 2.3966 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0496 -1.2342 -0.2840 9 6 1.3513 -2.4073 0.3735 10 6 0.2227 -2.3638 1.2130 11 6 -0.4088 -3.5333 1.5691 12 6 0.0599 -4.7510 1.0998 13 6 1.1737 -4.8062 0.2768 14 16 1.7589 -6.3630 -0.3050 15 8 2.4853 -6.0986 -1.4973 16 8 0.6527 -7.2534 -0.2502 17 7 2.8603 -6.9171 0.8005 18 6 2.4286 -7.2529 2.1595 19 6 3.5177 -8.0745 2.8522 20 6 3.0666 -8.4258 4.2714 21 1 2.0834 -8.8960 4.2519 22 6 4.0902 -9.3554 4.9427 23 6 4.7553 -8.7113 6.1600 24 6 3.7582 -7.7176 6.8124 25 16 3.0332 -6.9218 5.3203 26 6 1.8211 -3.6490 -0.0923 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1463 -1.4161 1.5766 29 1 -1.2749 -3.5024 2.2136 30 1 -0.4445 -5.6637 1.3812 31 1 3.7913 -7.0192 0.5482 32 1 1.5078 -7.8346 2.1149 33 1 2.2522 -6.3359 2.7218 34 1 4.4385 -7.4929 2.8968 35 1 3.6940 -8.9915 2.2899 36 1 3.5844 -10.2677 5.2585 37 1 4.8602 -9.6154 4.2163 38 1 5.0260 -9.4834 6.8801 39 1 5.6521 -8.1767 5.8467 40 1 2.9961 -8.2453 7.3858 41 1 4.2793 -6.9888 7.4333 42 1 2.6866 -3.6941 -0.7368 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867660708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:25 Heat of formation + Delta-G solvation = -75.575756 kcal Electronic energy + Delta-G solvation = -24810.506150 eV Core-core repulsion = 21200.387571 eV Total energy + Delta-G solvation = -3610.118578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -37.60663 -37.37649 -36.61800 -35.37568 -35.26020 -33.80574 -31.83640 -30.03789 -29.75313 -27.67205 -25.45504 -24.78787 -22.32050 -21.82789 -20.93869 -20.72501 -19.04494 -17.95589 -17.07646 -16.97319 -16.02697 -15.91054 -15.59025 -15.30208 -14.99704 -14.71667 -14.53832 -14.19855 -13.73081 -13.44188 -13.31335 -12.87529 -12.63458 -12.55657 -12.29489 -11.92637 -11.86975 -11.70195 -11.55543 -11.49748 -11.43979 -11.36570 -11.32193 -11.04707 -10.99344 -10.84313 -10.83310 -10.55729 -10.00132 -9.74489 -9.63001 -9.32263 -9.12111 -7.99512 -7.82799 -7.65904 -6.88762 -4.49619 1.04919 1.64456 2.15652 2.23793 2.66400 3.02684 3.06866 3.09656 3.56158 3.86163 4.14044 4.26733 4.36153 4.46527 4.55344 4.57392 4.84982 4.91264 4.99469 5.08002 5.20262 5.29311 5.36501 5.43122 5.47278 5.54066 5.56888 5.70360 5.81536 5.96941 6.08010 6.15863 6.22099 6.69589 6.79825 6.88132 7.06714 7.20745 7.27025 7.42409 7.76537 7.84506 7.98202 8.43995 8.70876 8.75793 10.07106 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.003229 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.754222 B = 8669.709816 C =10052.627374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.461 4.461 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.116 4.116 11 C -0.121 4.121 12 C -0.146 4.146 13 C -0.631 4.631 14 S 2.689 3.311 15 O -0.972 6.972 16 O -0.976 6.976 17 N -1.121 6.121 18 C 0.118 3.882 19 C -0.110 4.110 20 C -0.039 4.039 21 H 0.101 0.899 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.078 4.078 25 S -0.275 6.275 26 C -0.125 4.125 27 H 0.283 0.717 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.413 0.587 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.888 -14.509 11.927 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.088 3.912 10 C -0.136 4.136 11 C -0.140 4.140 12 C -0.167 4.167 13 C -0.723 4.723 14 S 2.785 3.215 15 O -0.963 6.963 16 O -0.966 6.966 17 N -0.879 5.879 18 C -0.009 4.009 19 C -0.150 4.150 20 C -0.169 4.169 21 H 0.120 0.880 22 C -0.165 4.165 23 C -0.163 4.163 24 C -0.226 4.226 25 S -0.049 6.049 26 C -0.146 4.146 27 H 0.094 0.906 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.246 0.754 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.865 -13.662 10.970 18.818 hybrid contribution 0.879 0.321 0.619 1.122 sum 7.744 -13.341 11.589 19.294 Atomic orbital electron populations 1.69786 1.07665 1.29503 1.34988 1.25933 0.94771 1.01544 0.92082 0.86208 0.81023 0.80605 0.78636 1.18242 1.19873 1.19623 1.19630 0.98334 0.90988 1.40057 0.89929 1.17680 0.91835 0.92025 0.89652 1.21632 0.97524 0.97093 0.97330 1.20808 0.99385 0.93171 1.00635 1.20083 0.97214 0.97455 1.01983 1.29697 1.09104 1.17830 1.15705 1.01632 0.72783 0.74501 0.72549 1.93538 1.72777 1.86264 1.43701 1.93505 1.52401 1.64165 1.86502 1.55548 1.23954 1.83486 1.24890 1.21278 0.97688 0.99914 0.82001 1.21875 0.99542 1.00966 0.92603 1.23723 1.02312 0.94418 0.96430 0.88046 1.22082 0.98318 0.98764 0.97368 1.22373 0.99005 0.98392 0.96559 1.24361 1.00404 1.00331 0.97553 1.88371 1.84904 1.19253 1.12366 1.20742 1.01028 0.91748 1.01071 0.90636 0.85793 0.88380 0.87654 0.75377 0.90353 0.90835 0.89834 0.89975 0.90950 0.90045 0.90351 0.90390 0.89334 0.87755 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.14 10.97 55.55 0.61 -19.53 16 2 C 0.07 1.84 5.14 -17.35 -0.09 1.75 16 3 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.03 9.05 -37.74 -0.34 -12.37 16 8 H 0.08 2.07 7.91 -52.48 -0.41 1.65 16 9 C 0.09 2.41 5.57 -106.83 -0.60 1.81 16 10 C -0.12 -2.94 8.69 -38.88 -0.34 -3.28 16 11 C -0.12 -2.77 10.02 -39.66 -0.40 -3.17 16 12 C -0.15 -3.24 9.53 -39.29 -0.37 -3.62 16 13 C -0.63 -14.08 5.94 -39.67 -0.24 -14.31 16 14 S 2.69 51.12 5.74 -107.50 -0.62 50.50 16 15 O -0.97 -20.76 17.27 -57.17 -0.99 -21.75 16 16 O -0.98 -20.15 16.73 -57.17 -0.96 -21.11 16 17 N -1.12 -15.93 6.00 -10.61 -0.06 -16.00 16 18 C 0.12 1.52 6.10 -4.04 -0.02 1.50 16 19 C -0.11 -1.03 4.59 -26.73 -0.12 -1.16 16 20 C -0.04 -0.35 3.30 -26.36 -0.09 -0.43 16 21 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 22 C -0.13 -0.81 6.03 -26.40 -0.16 -0.97 16 23 C -0.12 -0.76 6.34 -25.62 -0.16 -0.92 16 24 C -0.08 -0.59 7.52 38.30 0.29 -0.30 16 25 S -0.28 -3.11 21.81 -107.50 -2.34 -5.46 16 26 C -0.12 -3.06 9.26 -38.87 -0.36 -3.42 16 27 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 28 H 0.12 3.19 6.18 -52.48 -0.32 2.87 16 29 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.11 2.11 7.59 -52.48 -0.40 1.71 16 31 H 0.41 4.79 8.65 -34.47 -0.30 4.49 16 32 H 0.08 1.01 7.75 -51.92 -0.40 0.61 16 33 H 0.07 1.07 7.42 -51.93 -0.39 0.68 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.46 7.62 -51.93 -0.40 0.06 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.11 2.61 7.60 -52.48 -0.40 2.21 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -31.89 368.74 -12.79 -44.68 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.96 Total: 8.67 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: -3.00 Total: -38.87 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.55 Total: -35.53 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.94 Total: -42.86 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Atomic # 16 Polarization: 48.01 SS G_CDS: -2.96 Total: 45.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.89 -12.79 -44.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867660708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.892 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds