Wall clock time and date at job start Sat Apr 11 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86807 * 119.99835 * 2 1 4 4 H 1.48505 * 109.46895 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46679 * 299.99427 * 3 2 1 6 6 H 1.48498 * 109.47054 * 59.99434 * 3 2 1 7 7 C 1.39942 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00442 * 162.28674 * 7 2 1 9 9 C 1.41395 * 120.00072 * 342.29282 * 7 2 1 10 10 C 1.40727 * 120.24423 * 335.24638 * 9 7 2 11 11 C 1.37596 * 119.74763 * 179.97438 * 10 9 7 12 12 C 1.38660 * 120.24667 * 359.74939 * 11 10 9 13 13 C 1.38605 * 120.50034 * 0.51109 * 12 11 10 14 14 S 1.76202 * 119.87708 * 179.76377 * 13 12 11 15 15 O 1.42095 * 106.40522 * 156.18490 * 14 13 12 16 16 O 1.42103 * 106.39832 * 23.26300 * 14 13 12 17 17 N 1.65601 * 107.21896 * 269.72713 * 14 13 12 18 18 C 1.46493 * 120.00241 * 64.99310 * 17 14 13 19 19 C 1.53002 * 109.46978 * 165.00164 * 18 17 14 20 20 C 1.53007 * 109.47094 * 180.02562 * 19 18 17 21 21 H 1.09003 * 110.38954 * 52.76739 * 20 19 18 22 22 C 1.53704 * 110.34213 * 175.00181 * 20 19 18 23 23 C 1.52942 * 112.49284 * 116.04526 * 22 20 19 24 24 C 1.55155 * 108.95825 * 30.09928 * 23 22 20 25 25 S 1.83395 * 110.33846 * 290.54700 * 20 19 18 26 26 C 1.37636 * 120.24837 * 359.48784 * 13 12 11 27 27 H 0.96996 * 120.00651 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.12729 * 359.95955 * 10 9 7 29 29 H 1.08002 * 119.88018 * 179.97438 * 11 10 9 30 30 H 1.08004 * 119.74511 * 180.25163 * 12 11 10 31 31 H 0.97004 * 119.99793 * 244.99783 * 17 14 13 32 32 H 1.09008 * 109.47111 * 45.00696 * 18 17 14 33 33 H 1.09003 * 109.47579 * 285.00433 * 18 17 14 34 34 H 1.09000 * 109.47355 * 60.00401 * 19 18 17 35 35 H 1.08997 * 109.47307 * 299.99828 * 19 18 17 36 36 H 1.08995 * 108.88614 * 236.83686 * 22 20 19 37 37 H 1.09003 * 108.88608 * 355.25364 * 22 20 19 38 38 H 1.08993 * 109.60562 * 150.02812 * 23 22 20 39 39 H 1.08999 * 109.60527 * 270.17433 * 23 22 20 40 40 H 1.08998 * 111.12935 * 76.47521 * 24 23 22 41 41 H 1.09004 * 111.12955 * 200.60709 * 24 23 22 42 42 H 1.08004 * 120.12545 * 180.23644 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8834 2.3964 -1.2126 6 1 1.8833 2.3966 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0496 -1.2342 -0.2840 9 6 1.3513 -2.4073 0.3735 10 6 0.2227 -2.3638 1.2130 11 6 -0.4088 -3.5333 1.5691 12 6 0.0599 -4.7510 1.0998 13 6 1.1737 -4.8062 0.2768 14 16 1.7589 -6.3630 -0.3050 15 8 2.4853 -6.0986 -1.4973 16 8 0.6527 -7.2534 -0.2502 17 7 2.8603 -6.9171 0.8005 18 6 2.4286 -7.2529 2.1595 19 6 3.5177 -8.0745 2.8522 20 6 3.0666 -8.4258 4.2714 21 1 2.0834 -8.8960 4.2519 22 6 4.0902 -9.3554 4.9427 23 6 4.7553 -8.7113 6.1600 24 6 3.7582 -7.7176 6.8124 25 16 3.0332 -6.9218 5.3203 26 6 1.8211 -3.6490 -0.0923 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1463 -1.4161 1.5766 29 1 -1.2749 -3.5024 2.2136 30 1 -0.4445 -5.6637 1.3812 31 1 3.7913 -7.0192 0.5482 32 1 1.5078 -7.8346 2.1149 33 1 2.2522 -6.3359 2.7218 34 1 4.4385 -7.4929 2.8968 35 1 3.6940 -8.9915 2.2899 36 1 3.5844 -10.2677 5.2585 37 1 4.8602 -9.6154 4.2163 38 1 5.0260 -9.4834 6.8801 39 1 5.6521 -8.1767 5.8467 40 1 2.9961 -8.2453 7.3858 41 1 4.2793 -6.9888 7.4333 42 1 2.6866 -3.6941 -0.7368 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867660708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:24 Heat of formation + Delta-G solvation = -95.515764 kcal Electronic energy + Delta-G solvation = -24811.370813 eV Core-core repulsion = 21200.387571 eV Total energy + Delta-G solvation = -3610.983242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.45902 -38.37716 -38.01005 -36.92946 -36.25170 -35.67623 -32.67133 -31.92993 -31.60242 -28.41351 -27.36197 -25.51373 -23.70418 -23.15433 -22.77332 -21.32560 -20.56566 -19.64731 -18.49762 -17.82728 -17.71172 -17.29894 -16.86268 -16.57990 -16.25591 -16.02917 -15.85111 -15.24954 -15.08785 -14.94783 -14.44501 -14.33223 -13.75241 -13.63860 -13.54897 -13.27862 -13.20998 -13.16736 -13.07528 -13.06415 -12.85307 -12.74633 -12.60497 -12.32423 -12.20075 -12.10813 -11.90243 -11.56088 -11.39399 -11.38212 -11.15799 -10.73459 -10.38495 -9.86200 -9.57039 -8.74128 -8.69199 -6.46414 -0.50593 0.39694 0.82791 0.95963 1.36266 1.43930 1.50526 1.52164 2.10626 2.17656 2.53458 2.77457 3.41142 3.50318 3.59034 3.78143 3.91514 3.99185 4.14360 4.25556 4.29195 4.37791 4.42279 4.48480 4.63464 4.66652 4.78010 4.80880 4.82592 4.88516 5.04385 5.05402 5.07674 5.13215 5.19111 5.22887 5.30477 5.40305 5.54852 5.87064 5.92452 6.08301 6.12436 6.51178 6.78648 6.83447 8.24541 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.003229 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.754222 B = 8669.709816 C =10052.627374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.498 4.498 8 H 0.080 0.920 9 C 0.062 3.938 10 C -0.140 4.140 11 C -0.124 4.124 12 C -0.147 4.147 13 C -0.640 4.640 14 S 2.721 3.279 15 O -0.995 6.995 16 O -0.986 6.986 17 N -1.102 6.102 18 C 0.111 3.889 19 C -0.103 4.103 20 C -0.024 4.024 21 H 0.104 0.896 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.060 4.060 25 S -0.373 6.373 26 C -0.146 4.146 27 H 0.292 0.708 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.428 0.572 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.007 -16.433 12.958 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.527 4.527 8 H 0.098 0.902 9 C 0.059 3.941 10 C -0.159 4.159 11 C -0.143 4.143 12 C -0.168 4.168 13 C -0.728 4.728 14 S 2.813 3.187 15 O -0.985 6.985 16 O -0.976 6.976 17 N -0.864 5.864 18 C -0.015 4.015 19 C -0.143 4.143 20 C -0.153 4.153 21 H 0.123 0.877 22 C -0.163 4.163 23 C -0.160 4.160 24 C -0.208 4.208 25 S -0.147 6.147 26 C -0.167 4.167 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.265 0.735 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.971 -15.568 12.008 21.216 hybrid contribution 0.503 0.758 0.364 0.980 sum 8.475 -14.810 12.373 21.077 Atomic orbital electron populations 1.69826 1.09062 1.30961 1.35210 1.26803 0.95549 1.04694 0.90988 0.85102 0.79428 0.75791 0.79076 1.18053 1.19020 1.18570 1.19894 0.98596 0.92249 1.41989 0.90153 1.18051 0.92650 0.93036 0.90349 1.21630 0.98288 0.97565 0.98465 1.21141 0.99850 0.92768 1.00514 1.20449 0.96999 0.98092 1.01251 1.30272 1.08718 1.19272 1.14539 1.00726 0.72679 0.73017 0.72249 1.93502 1.73131 1.86316 1.45560 1.93489 1.53695 1.63568 1.86843 1.55127 1.24133 1.82227 1.24942 1.21475 0.99407 0.99834 0.80826 1.21869 0.98093 1.01412 0.92949 1.23773 1.03429 0.92760 0.95330 0.87740 1.22107 0.98099 0.98497 0.97604 1.22383 0.98211 0.98475 0.96890 1.24448 1.00611 1.00250 0.95468 1.88705 1.85884 1.23410 1.16700 1.20838 1.01731 0.92213 1.01932 0.89743 0.86961 0.85684 0.85216 0.73525 0.90048 0.92773 0.89690 0.87315 0.89287 0.88728 0.87951 0.90778 0.88304 0.87395 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.95 10.97 21.82 0.24 -42.71 16 2 C 0.03 1.75 5.14 85.26 0.44 2.19 16 3 Si 0.99 38.06 29.60 68.60 2.03 40.09 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 5 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 7 C -0.50 -27.09 9.05 23.46 0.21 -26.88 16 8 H 0.08 4.21 7.91 -2.91 -0.02 4.19 16 9 C 0.06 3.42 5.57 -21.29 -0.12 3.30 16 10 C -0.14 -7.36 8.69 22.73 0.20 -7.16 16 11 C -0.12 -5.75 10.02 22.22 0.22 -5.52 16 12 C -0.15 -6.51 9.53 22.46 0.21 -6.30 16 13 C -0.64 -28.76 5.94 22.21 0.13 -28.63 16 14 S 2.72 101.26 5.74 -56.49 -0.32 100.94 16 15 O -0.99 -42.03 17.27 -128.00 -2.21 -44.24 16 16 O -0.99 -39.23 16.73 -128.00 -2.14 -41.37 16 17 N -1.10 -29.70 6.00 -187.49 -1.12 -30.83 16 18 C 0.11 2.70 6.10 86.38 0.53 3.23 16 19 C -0.10 -1.70 4.59 30.60 0.14 -1.56 16 20 C -0.02 -0.37 3.30 30.83 0.10 -0.27 16 21 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 22 C -0.12 -1.16 6.03 30.81 0.19 -0.98 16 23 C -0.12 -1.11 6.34 31.31 0.20 -0.91 16 24 C -0.06 -0.80 7.52 72.72 0.55 -0.25 16 25 S -0.37 -8.32 21.81 -56.49 -1.23 -9.55 16 26 C -0.15 -7.42 9.26 22.73 0.21 -7.21 16 27 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 28 H 0.11 6.06 6.18 -2.91 -0.02 6.04 16 29 H 0.13 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.13 5.03 7.59 -2.91 -0.02 5.01 16 31 H 0.43 9.11 8.65 -96.74 -0.84 8.28 16 32 H 0.08 1.95 7.75 -2.38 -0.02 1.93 16 33 H 0.05 1.57 7.42 -2.39 -0.02 1.55 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.09 0.68 7.62 -2.39 -0.02 0.66 16 38 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.11 5.44 7.60 -2.91 -0.02 5.41 16 Total: -1.00 -71.08 368.74 -1.36 -72.44 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: 0.20 Total: 32.17 kcal Atomic # 6 Polarization: -80.14 SS G_CDS: 3.21 Total: -76.94 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -0.88 Total: -73.53 kcal Atomic # 8 Polarization: -81.26 SS G_CDS: -4.35 Total: -85.61 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 16 Polarization: 92.94 SS G_CDS: -1.56 Total: 91.38 kcal Total: -71.08 -1.36 -72.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867660708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.075 kcal (2) G-P(sol) polarization free energy of solvation -71.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds