Wall clock time and date at job start Sat Apr 11 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99690 * 2 1 4 4 H 1.48494 * 109.47266 * 239.99810 * 3 2 1 5 5 H 1.48497 * 109.47254 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46662 * 119.99953 * 3 2 1 7 7 C 1.37873 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00033 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47250 * 60.00467 * 9 7 2 11 11 N 1.46507 * 109.46811 * 180.02562 * 9 7 2 12 12 C 1.34778 * 119.99677 * 205.00501 * 11 9 7 13 13 O 1.21554 * 120.00061 * 359.97438 * 12 11 9 14 14 C 1.47853 * 119.99773 * 180.02562 * 12 11 9 15 15 C 1.39579 * 120.53016 * 359.97156 * 14 12 11 16 16 N 1.31665 * 120.71029 * 180.02562 * 15 14 12 17 17 C 1.31892 * 121.95317 * 0.02562 * 16 15 14 18 18 C 1.38895 * 120.98649 * 359.97438 * 17 16 15 19 19 N 1.40294 * 120.41030 * 180.02562 * 18 17 16 20 20 C 1.36105 * 125.93939 * 4.71965 * 19 18 17 21 21 C 1.35379 * 106.04939 * 179.84445 * 20 19 18 22 22 N 1.33767 * 106.53429 * 0.41159 * 21 20 19 23 23 N 1.28602 * 109.06355 * 359.73321 * 22 21 20 24 24 C 1.38979 * 119.17751 * 0.02562 * 18 17 16 25 25 C 1.53000 * 109.47609 * 300.00080 * 9 7 2 26 26 F 1.39905 * 109.47028 * 300.00293 * 25 9 7 27 27 F 1.39901 * 109.46803 * 60.00074 * 25 9 7 28 28 F 1.39894 * 109.47531 * 180.02562 * 25 9 7 29 29 H 0.97007 * 120.00404 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00308 * 25.00092 * 11 9 7 31 31 H 1.08004 * 119.64157 * 0.02599 * 15 14 12 32 32 H 1.07997 * 119.50256 * 180.28205 * 17 16 15 33 33 H 1.08004 * 126.97774 * 0.02562 * 20 19 18 34 34 H 1.07994 * 126.73260 * 180.14693 * 21 20 19 35 35 H 1.07994 * 120.88712 * 180.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 2.2031 -3.6126 -0.0005 12 6 1.8370 -4.8122 -0.4939 13 8 0.7168 -4.9703 -0.9385 14 6 2.7976 -5.9361 -0.4934 15 6 4.0866 -5.7670 0.0147 16 7 4.9451 -6.7653 0.0165 17 6 4.6318 -7.9561 -0.4560 18 6 3.3703 -8.2085 -0.9797 19 7 3.0498 -9.4799 -1.4786 20 6 3.8475 -10.5816 -1.4297 21 6 3.1456 -11.5783 -2.0185 22 7 1.9786 -11.0479 -2.4006 23 7 1.9524 -9.8061 -2.0672 24 6 2.4295 -7.1858 -1.0032 25 6 0.3718 -2.5805 1.2490 26 9 1.1766 -2.5066 2.3910 27 9 -0.5373 -1.5172 1.2495 28 9 -0.3272 -3.7923 1.2493 29 1 -0.4851 0.8401 -0.0004 30 1 3.0969 -3.4865 0.3545 31 1 4.3829 -4.8068 0.4107 32 1 5.3655 -8.7482 -0.4309 33 1 4.8381 -10.6481 -1.0045 34 1 3.4668 -12.6001 -2.1568 35 1 1.4403 -7.3516 -1.4037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928803658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:42 Heat of formation + Delta-G solvation = -18.565424 kcal Electronic energy + Delta-G solvation = -29222.445073 eV Core-core repulsion = 24423.497493 eV Total energy + Delta-G solvation = -4798.947580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.084 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.46323 -46.11842 -45.72072 -43.78349 -40.88266 -38.88045 -35.50998 -34.92896 -33.03646 -32.59497 -31.46880 -30.75069 -28.54487 -25.35843 -25.01728 -24.61114 -23.01239 -22.11534 -21.57493 -20.37641 -19.22689 -17.65253 -17.45878 -17.14717 -16.89832 -16.82480 -16.69414 -16.55438 -15.60629 -15.37469 -15.08087 -14.75551 -14.66104 -14.41588 -13.79815 -13.61977 -13.27234 -13.08322 -12.95597 -12.63260 -12.51050 -12.38396 -12.11296 -12.08566 -11.92344 -11.80059 -11.44987 -11.28926 -10.97719 -10.94194 -10.57152 -10.38613 -10.13881 -9.83924 -9.82211 -9.58133 -9.27243 -8.84166 -8.50938 -6.33800 -4.59470 -0.05738 0.44140 1.51453 1.76551 2.20888 2.80762 3.13833 3.18240 3.20367 3.32422 3.57895 3.75016 3.88261 4.10306 4.15385 4.22367 4.43697 4.44714 4.60767 4.69165 4.79359 4.83059 4.92806 5.13075 5.52911 5.61741 5.70393 5.73604 5.76098 5.79009 6.06757 6.29328 6.74231 6.88246 7.24087 7.29959 7.51503 8.00188 8.08488 8.33926 8.53597 9.09004 10.57709 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.002835 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.205642 B = 9872.457483 C =10398.653762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.245 3.755 10 H 0.090 0.910 11 N -0.700 5.700 12 C 0.551 3.449 13 O -0.517 6.517 14 C -0.149 4.149 15 C 0.142 3.858 16 N -0.459 5.459 17 C 0.126 3.874 18 C 0.059 3.941 19 N -0.238 5.238 20 C -0.050 4.050 21 C -0.043 4.043 22 N -0.261 5.261 23 N -0.072 5.072 24 C 0.000 4.000 25 C 0.417 3.583 26 F -0.208 7.208 27 F -0.135 7.135 28 F -0.217 7.217 29 H 0.271 0.729 30 H 0.399 0.601 31 H 0.176 0.824 32 H 0.170 0.830 33 H 0.197 0.803 34 H 0.197 0.803 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.451 -14.765 0.031 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.593 4.593 8 H 0.097 0.903 9 C 0.140 3.860 10 H 0.107 0.893 11 N -0.349 5.349 12 C 0.335 3.665 13 O -0.393 6.393 14 C -0.155 4.155 15 C -0.016 4.016 16 N -0.167 5.167 17 C -0.034 4.034 18 C -0.035 4.035 19 N -0.027 5.027 20 C -0.197 4.197 21 C -0.198 4.198 22 N -0.127 5.127 23 N -0.050 5.050 24 C -0.028 4.028 25 C 0.360 3.640 26 F -0.190 7.190 27 F -0.116 7.116 28 F -0.199 7.199 29 H 0.081 0.919 30 H 0.234 0.766 31 H 0.193 0.807 32 H 0.187 0.813 33 H 0.214 0.786 34 H 0.214 0.786 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 9.847 -14.142 -0.436 17.238 hybrid contribution 0.958 0.344 0.597 1.180 sum 10.805 -13.798 0.161 17.526 Atomic orbital electron populations 1.70379 1.05901 1.27739 1.43015 1.25079 0.95175 1.00197 0.93866 0.86241 0.79343 0.81144 0.78984 1.19704 1.20810 1.19733 1.20809 0.93801 0.87907 1.56817 0.90292 1.19837 0.88599 0.85425 0.92095 0.89290 1.46008 1.17428 1.10244 1.61269 1.17867 0.86803 0.82503 0.79346 1.90836 1.20177 1.82611 1.45690 1.21198 0.96479 0.95356 1.02464 1.23339 0.88100 0.98243 0.91919 1.67868 1.34442 0.99168 1.15181 1.22804 0.92127 0.95674 0.92834 1.18637 0.97061 0.83053 1.04721 1.44646 1.12430 1.08087 1.37497 1.23889 1.01020 0.86239 1.08595 1.23703 0.91961 1.01449 1.02708 1.75172 1.19576 0.99872 1.18074 1.78517 1.05084 1.09896 1.11532 1.21596 1.00085 0.89360 0.91801 1.23109 0.80910 0.72910 0.87039 1.92997 1.74346 1.96185 1.55485 1.93415 1.68299 1.53682 1.96178 1.93076 1.81519 1.48372 1.96967 0.91871 0.76588 0.80689 0.81303 0.78606 0.78626 0.81405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.10 9.50 55.43 0.53 -21.58 16 2 C 0.07 1.65 5.20 -17.82 -0.09 1.55 16 3 Si 0.92 19.22 29.54 -169.99 -5.02 14.20 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.56 -13.33 8.46 -34.44 -0.29 -13.62 16 8 H 0.08 1.75 7.74 -52.49 -0.41 1.34 16 9 C 0.25 5.71 2.21 -69.08 -0.15 5.56 16 10 H 0.09 2.32 7.58 -51.93 -0.39 1.93 16 11 N -0.70 -12.93 4.94 -55.87 -0.28 -13.21 16 12 C 0.55 10.00 7.31 -12.33 -0.09 9.91 16 13 O -0.52 -11.38 14.99 5.32 0.08 -11.30 16 14 C -0.15 -2.06 5.89 -104.84 -0.62 -2.68 16 15 C 0.14 1.59 10.71 -17.12 -0.18 1.41 16 16 N -0.46 -4.76 10.34 -12.77 -0.13 -4.89 16 17 C 0.13 1.10 10.62 -17.28 -0.18 0.92 16 18 C 0.06 0.65 6.69 -83.46 -0.56 0.09 16 19 N -0.24 -2.64 3.56 -10.41 -0.04 -2.68 16 20 C -0.05 -0.37 10.92 -16.68 -0.18 -0.55 16 21 C -0.04 -0.36 12.05 -17.73 -0.21 -0.57 16 22 N -0.26 -3.38 12.39 30.24 0.37 -3.01 16 23 N -0.07 -1.00 12.49 60.35 0.75 -0.25 16 24 C 0.00 -0.01 9.28 -38.69 -0.36 -0.36 16 25 C 0.42 10.18 2.81 37.16 0.10 10.28 16 26 F -0.21 -4.87 16.94 2.25 0.04 -4.83 16 27 F -0.13 -3.59 12.91 2.25 0.03 -3.56 16 28 F -0.22 -5.30 15.67 2.25 0.04 -5.27 16 29 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.40 6.01 6.60 -40.82 -0.27 5.74 16 31 H 0.18 1.59 6.42 -52.48 -0.34 1.26 16 32 H 0.17 0.80 6.79 -52.49 -0.36 0.44 16 33 H 0.20 0.51 7.14 -52.48 -0.37 0.13 16 34 H 0.20 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.17 2.48 7.46 -52.49 -0.39 2.09 16 LS Contribution 322.84 15.07 4.87 4.87 Total: -1.00 -32.05 322.84 -3.67 -35.72 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -2.09 Total: 3.83 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -2.82 Total: 11.93 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 1.21 Total: -45.60 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 9 Polarization: -13.76 SS G_CDS: 0.10 Total: -13.66 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.05 -3.67 -35.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.158 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds