Wall clock time and date at job start Sat Apr 11 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99690 * 2 1 4 4 H 1.48494 * 109.47266 * 239.99810 * 3 2 1 5 5 H 1.48497 * 109.47254 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46662 * 119.99953 * 3 2 1 7 7 C 1.37873 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00033 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47250 * 60.00467 * 9 7 2 11 11 N 1.46507 * 109.46811 * 180.02562 * 9 7 2 12 12 C 1.34778 * 119.99677 * 205.00501 * 11 9 7 13 13 O 1.21554 * 120.00061 * 359.97438 * 12 11 9 14 14 C 1.47853 * 119.99773 * 180.02562 * 12 11 9 15 15 C 1.39579 * 120.53016 * 359.97156 * 14 12 11 16 16 N 1.31665 * 120.71029 * 180.02562 * 15 14 12 17 17 C 1.31892 * 121.95317 * 0.02562 * 16 15 14 18 18 C 1.38895 * 120.98649 * 359.97438 * 17 16 15 19 19 N 1.40294 * 120.41030 * 180.02562 * 18 17 16 20 20 C 1.36105 * 125.93939 * 4.71965 * 19 18 17 21 21 C 1.35379 * 106.04939 * 179.84445 * 20 19 18 22 22 N 1.33767 * 106.53429 * 0.41159 * 21 20 19 23 23 N 1.28602 * 109.06355 * 359.73321 * 22 21 20 24 24 C 1.38979 * 119.17751 * 0.02562 * 18 17 16 25 25 C 1.53000 * 109.47609 * 300.00080 * 9 7 2 26 26 F 1.39905 * 109.47028 * 300.00293 * 25 9 7 27 27 F 1.39901 * 109.46803 * 60.00074 * 25 9 7 28 28 F 1.39894 * 109.47531 * 180.02562 * 25 9 7 29 29 H 0.97007 * 120.00404 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00308 * 25.00092 * 11 9 7 31 31 H 1.08004 * 119.64157 * 0.02599 * 15 14 12 32 32 H 1.07997 * 119.50256 * 180.28205 * 17 16 15 33 33 H 1.08004 * 126.97774 * 0.02562 * 20 19 18 34 34 H 1.07994 * 126.73260 * 180.14693 * 21 20 19 35 35 H 1.07994 * 120.88712 * 180.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 2.2031 -3.6126 -0.0005 12 6 1.8370 -4.8122 -0.4939 13 8 0.7168 -4.9703 -0.9385 14 6 2.7976 -5.9361 -0.4934 15 6 4.0866 -5.7670 0.0147 16 7 4.9451 -6.7653 0.0165 17 6 4.6318 -7.9561 -0.4560 18 6 3.3703 -8.2085 -0.9797 19 7 3.0498 -9.4799 -1.4786 20 6 3.8475 -10.5816 -1.4297 21 6 3.1456 -11.5783 -2.0185 22 7 1.9786 -11.0479 -2.4006 23 7 1.9524 -9.8061 -2.0672 24 6 2.4295 -7.1858 -1.0032 25 6 0.3718 -2.5805 1.2490 26 9 1.1766 -2.5066 2.3910 27 9 -0.5373 -1.5172 1.2495 28 9 -0.3272 -3.7923 1.2493 29 1 -0.4851 0.8401 -0.0004 30 1 3.0969 -3.4865 0.3545 31 1 4.3829 -4.8068 0.4107 32 1 5.3655 -8.7482 -0.4309 33 1 4.8381 -10.6481 -1.0045 34 1 3.4668 -12.6001 -2.1568 35 1 1.4403 -7.3516 -1.4037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928803658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:41 Heat of formation + Delta-G solvation = -41.937370 kcal Electronic energy + Delta-G solvation = -29223.458557 eV Core-core repulsion = 24423.497493 eV Total energy + Delta-G solvation = -4799.961064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.084 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.44921 -48.08478 -47.75454 -44.53619 -41.89323 -40.25893 -36.70708 -36.26839 -34.61960 -33.79443 -32.18780 -31.73015 -30.16874 -26.68480 -26.25649 -25.88456 -24.07126 -23.09531 -22.92276 -21.75798 -20.35178 -19.13960 -18.94693 -18.69902 -18.42071 -18.10571 -17.99007 -17.65639 -17.03487 -16.78873 -16.23474 -16.04012 -15.87045 -15.31210 -15.02933 -15.00979 -14.89667 -14.61388 -14.50634 -14.43914 -14.30891 -14.06767 -13.93341 -13.75483 -13.08665 -12.83446 -12.80790 -12.63030 -12.60865 -12.25721 -12.20056 -11.65084 -11.58963 -11.15553 -10.85118 -10.69039 -10.52691 -10.25448 -10.07038 -8.22285 -6.53963 -0.89317 -0.53673 0.76165 1.02588 1.48767 1.50358 1.51513 1.59074 1.62444 1.92175 2.37002 2.43934 2.55548 2.93425 2.98742 3.10736 3.24419 3.49521 3.55836 3.59174 3.74016 3.82315 3.95928 4.14072 4.18060 4.19984 4.38504 4.66299 4.75906 4.86205 4.92697 5.18429 5.24230 5.49016 5.55936 5.62416 6.38527 6.48030 6.53417 7.05960 7.20599 7.32619 8.70230 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.002835 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.205642 B = 9872.457483 C =10398.653762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.016 3.984 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.562 4.562 8 H 0.100 0.900 9 C 0.252 3.748 10 H 0.051 0.949 11 N -0.692 5.692 12 C 0.551 3.449 13 O -0.567 6.567 14 C -0.167 4.167 15 C 0.158 3.842 16 N -0.459 5.459 17 C 0.157 3.843 18 C 0.057 3.943 19 N -0.246 5.246 20 C -0.026 4.026 21 C -0.050 4.050 22 N -0.298 5.298 23 N -0.133 5.133 24 C -0.013 4.013 25 C 0.413 3.587 26 F -0.200 7.200 27 F -0.150 7.150 28 F -0.221 7.221 29 H 0.269 0.731 30 H 0.417 0.583 31 H 0.196 0.804 32 H 0.224 0.776 33 H 0.254 0.746 34 H 0.234 0.766 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.987 -16.092 0.900 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.190 4.190 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.599 4.599 8 H 0.118 0.882 9 C 0.145 3.855 10 H 0.069 0.931 11 N -0.343 5.343 12 C 0.338 3.662 13 O -0.446 6.446 14 C -0.173 4.173 15 C 0.000 4.000 16 N -0.166 5.166 17 C -0.004 4.004 18 C -0.036 4.036 19 N -0.034 5.034 20 C -0.173 4.173 21 C -0.206 4.206 22 N -0.163 5.163 23 N -0.111 5.111 24 C -0.041 4.041 25 C 0.356 3.644 26 F -0.182 7.182 27 F -0.131 7.131 28 F -0.203 7.203 29 H 0.079 0.921 30 H 0.255 0.745 31 H 0.213 0.787 32 H 0.240 0.760 33 H 0.270 0.730 34 H 0.251 0.749 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.413 -15.483 0.437 21.157 hybrid contribution -0.382 0.550 0.327 0.745 sum 14.031 -14.933 0.764 20.505 Atomic orbital electron populations 1.70524 1.07589 1.28323 1.44447 1.26005 0.95848 1.03765 0.93391 0.85205 0.77975 0.76652 0.79505 1.18597 1.21379 1.18775 1.21215 0.94811 0.87935 1.55924 0.88245 1.19409 0.88859 0.87183 0.90008 0.93128 1.45774 1.17481 1.09435 1.61596 1.18481 0.86910 0.83096 0.77724 1.90805 1.22663 1.83449 1.47733 1.20707 0.96880 0.93826 1.05903 1.23566 0.86616 0.99456 0.90321 1.68054 1.33571 0.99478 1.15489 1.23626 0.91531 0.96067 0.89155 1.18714 0.97319 0.82634 1.04974 1.44768 1.12587 1.08751 1.37335 1.24863 1.02092 0.84170 1.06207 1.24487 0.90620 1.03410 1.02058 1.75107 1.22084 1.00057 1.19050 1.78533 1.07245 1.10729 1.14556 1.21445 0.99900 0.90440 0.92334 1.23317 0.80895 0.72380 0.87783 1.92995 1.73990 1.96136 1.55104 1.93385 1.68948 1.54458 1.96308 1.93067 1.81695 1.48481 1.97024 0.92136 0.74456 0.78700 0.75985 0.72985 0.74947 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.40 9.50 21.45 0.20 -47.20 16 2 C 0.02 0.77 5.20 84.65 0.44 1.21 16 3 Si 0.98 38.91 29.54 68.60 2.03 40.93 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.29 -11.55 7.11 99.48 0.71 -10.85 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.56 -26.84 8.46 25.60 0.22 -26.62 16 8 H 0.10 4.22 7.74 -2.91 -0.02 4.20 16 9 C 0.25 12.08 2.21 44.24 0.10 12.18 16 10 H 0.05 2.82 7.58 -2.39 -0.02 2.80 16 11 N -0.69 -25.85 4.94 -448.95 -2.22 -28.07 16 12 C 0.55 20.79 7.31 86.79 0.63 21.43 16 13 O -0.57 -26.80 14.99 -3.88 -0.06 -26.86 16 14 C -0.17 -4.61 5.89 -20.01 -0.12 -4.73 16 15 C 0.16 3.15 10.71 85.04 0.91 4.06 16 16 N -0.46 -7.57 10.34 -194.32 -2.01 -9.58 16 17 C 0.16 1.99 10.62 84.84 0.90 2.89 16 18 C 0.06 1.14 6.69 38.12 0.25 1.39 16 19 N -0.25 -5.00 3.56 -186.83 -0.66 -5.67 16 20 C -0.03 -0.27 10.92 83.37 0.91 0.64 16 21 C -0.05 -0.70 12.05 83.74 1.01 0.31 16 22 N -0.30 -7.67 12.39 -58.25 -0.72 -8.39 16 23 N -0.13 -3.80 12.49 37.02 0.46 -3.34 16 24 C -0.01 -0.35 9.28 22.85 0.21 -0.14 16 25 C 0.41 20.74 2.81 71.98 0.20 20.94 16 26 F -0.20 -9.37 16.94 44.97 0.76 -8.61 16 27 F -0.15 -8.29 12.91 44.97 0.58 -7.70 16 28 F -0.22 -11.21 15.67 44.97 0.70 -10.51 16 29 H 0.27 13.91 8.31 -92.70 -0.77 13.13 16 30 H 0.42 12.10 6.60 -92.71 -0.61 11.49 16 31 H 0.20 2.96 6.42 -2.91 -0.02 2.94 16 32 H 0.22 0.37 6.79 -2.91 -0.02 0.35 16 33 H 0.25 -0.62 7.14 -2.91 -0.02 -0.64 16 34 H 0.23 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.14 4.59 7.46 -2.91 -0.02 4.57 16 Total: -1.00 -76.08 322.84 5.33 -70.75 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.59 Total: 10.69 kcal Atomic # 6 Polarization: 27.88 SS G_CDS: 5.67 Total: 33.56 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -4.95 Total: -102.24 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.06 Total: -26.86 kcal Atomic # 9 Polarization: -28.87 SS G_CDS: 2.05 Total: -26.82 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.93 kcal Total: -76.08 5.33 -70.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.808 kcal (2) G-P(sol) polarization free energy of solvation -76.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds