Wall clock time and date at job start Sat Apr 11 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86806 * 119.99504 * 2 1 4 4 H 1.48501 * 109.46834 * 240.00408 * 3 2 1 5 5 H 1.48497 * 109.46897 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46927 * 120.00345 * 3 2 1 7 7 C 1.37870 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00247 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47052 * 59.99936 * 9 7 2 11 11 N 1.46491 * 109.47449 * 180.02562 * 9 7 2 12 12 C 1.34779 * 120.00347 * 205.00098 * 11 9 7 13 13 O 1.21541 * 119.99502 * 359.97438 * 12 11 9 14 14 C 1.47978 * 120.00347 * 179.97438 * 12 11 9 15 15 C 1.39921 * 120.11519 * 180.02562 * 14 12 11 16 16 C 1.38483 * 117.97202 * 179.70701 * 15 14 12 17 17 C 1.39355 * 118.02694 * 0.52632 * 16 15 14 18 18 N 1.39524 * 120.02856 * 179.74063 * 17 16 15 19 19 C 1.37225 * 126.49500 * 184.90117 * 18 17 16 20 20 C 1.34591 * 106.82547 * 180.25161 * 19 18 17 21 21 N 1.34177 * 108.23100 * 359.75930 * 20 19 18 22 22 C 1.30458 * 109.38651 * 359.97438 * 21 20 19 23 23 N 1.32693 * 119.93544 * 359.45913 * 17 16 15 24 24 N 1.28352 * 122.19792 * 0.28114 * 23 17 16 25 25 C 1.53004 * 109.46897 * 300.00003 * 9 7 2 26 26 F 1.39897 * 109.47142 * 300.00031 * 25 9 7 27 27 F 1.39904 * 109.47102 * 59.99907 * 25 9 7 28 28 F 1.39897 * 109.47191 * 179.97438 * 25 9 7 29 29 H 0.96997 * 120.00650 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00249 * 24.99642 * 11 9 7 31 31 H 1.08001 * 121.01658 * 359.95628 * 15 14 12 32 32 H 1.08003 * 120.98793 * 180.26803 * 16 15 14 33 33 H 1.08000 * 126.58795 * 0.04266 * 19 18 17 34 34 H 1.07994 * 125.88641 * 179.73900 * 20 19 18 35 35 H 1.08002 * 125.72353 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 7 2.2032 -3.6126 -0.0005 12 6 1.8372 -4.8122 -0.4938 13 8 0.7171 -4.9704 -0.9382 14 6 2.7990 -5.9368 -0.4943 15 6 2.4217 -7.1831 -1.0064 16 6 3.3589 -8.2025 -0.9906 17 6 4.6161 -7.9280 -0.4558 18 7 5.5902 -8.9261 -0.4141 19 6 6.8313 -8.8316 0.1637 20 6 7.4426 -10.0148 -0.0306 21 7 6.6021 -10.8161 -0.7029 22 6 5.4883 -10.1779 -0.9354 23 7 4.8877 -6.7151 0.0086 24 7 4.0232 -5.7665 -0.0093 25 6 0.3721 -2.5805 1.2491 26 9 1.1768 -2.5065 2.3910 27 9 -0.5371 -1.5172 1.2497 28 9 -0.3277 -3.7918 1.2488 29 1 -0.4851 0.8400 0.0004 30 1 3.0971 -3.4864 0.3544 31 1 1.4311 -7.3440 -1.4055 32 1 3.1211 -9.1825 -1.3774 33 1 7.2403 -7.9717 0.6732 34 1 8.4381 -10.2745 0.2976 35 1 4.6313 -10.5754 -1.4588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928812834.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:54 Heat of formation + Delta-G solvation = -32.182133 kcal Electronic energy + Delta-G solvation = -29058.697281 eV Core-core repulsion = 24259.159236 eV Total energy + Delta-G solvation = -4799.538045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.084 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.45658 -46.11313 -45.71137 -42.84418 -41.29795 -39.03121 -35.27104 -34.98307 -33.63160 -32.75756 -31.32112 -29.96272 -28.57420 -25.83387 -25.11726 -24.63994 -22.47182 -21.73074 -21.46612 -20.39201 -19.36222 -18.55430 -17.82438 -16.98670 -16.86361 -16.74429 -16.42823 -15.87995 -15.38233 -15.24253 -15.01180 -14.81896 -14.39056 -14.35086 -14.20953 -13.88685 -13.60611 -13.24794 -13.03183 -12.63824 -12.50588 -12.36884 -12.28878 -12.08032 -11.91475 -11.60431 -11.26716 -10.95429 -10.91655 -10.76518 -10.66715 -10.50461 -10.24049 -9.81017 -9.79258 -9.58809 -9.00438 -8.81415 -8.48555 -6.31712 -4.56331 -0.16510 0.25869 1.61157 1.83622 2.63834 2.72474 3.14824 3.17598 3.22244 3.26094 3.48322 3.56719 3.76481 4.01770 4.11561 4.16639 4.32063 4.44199 4.51122 4.72590 4.85060 4.93169 5.10271 5.24360 5.29035 5.52042 5.70664 5.74935 5.75442 6.08334 6.22749 6.59459 6.72720 6.90201 7.32751 7.47896 7.54404 7.94384 8.13634 8.35026 8.54294 9.11829 10.59955 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.020590 B = 0.002740 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.541521 B =10214.898128 C =10905.342537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.243 3.757 10 H 0.090 0.910 11 N -0.683 5.683 12 C 0.565 3.435 13 O -0.519 6.519 14 C 0.030 3.970 15 C -0.033 4.033 16 C -0.136 4.136 17 C 0.297 3.703 18 N -0.409 5.409 19 C -0.022 4.022 20 C -0.027 4.027 21 N -0.474 5.474 22 C 0.194 3.806 23 N -0.248 5.248 24 N -0.172 5.172 25 C 0.417 3.583 26 F -0.207 7.207 27 F -0.134 7.134 28 F -0.219 7.219 29 H 0.270 0.730 30 H 0.411 0.589 31 H 0.177 0.823 32 H 0.165 0.835 33 H 0.187 0.813 34 H 0.180 0.820 35 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.688 -15.083 -1.667 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.591 4.591 8 H 0.098 0.902 9 C 0.138 3.862 10 H 0.107 0.893 11 N -0.332 5.332 12 C 0.346 3.654 13 O -0.394 6.394 14 C -0.118 4.118 15 C -0.063 4.063 16 C -0.166 4.166 17 C 0.062 3.938 18 N -0.093 5.093 19 C -0.151 4.151 20 C -0.171 4.171 21 N -0.191 5.191 22 C -0.087 4.087 23 N -0.095 5.095 24 N -0.019 5.019 25 C 0.361 3.639 26 F -0.189 7.189 27 F -0.115 7.115 28 F -0.201 7.201 29 H 0.081 0.919 30 H 0.247 0.753 31 H 0.194 0.806 32 H 0.182 0.818 33 H 0.205 0.795 34 H 0.197 0.803 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 7.904 -14.757 -1.492 16.806 hybrid contribution -0.485 0.714 0.131 0.873 sum 7.419 -14.043 -1.361 15.940 Atomic orbital electron populations 1.70374 1.05880 1.27703 1.43293 1.25074 0.95179 1.00181 0.93846 0.86232 0.79333 0.81037 0.79078 1.19687 1.20827 1.19677 1.20844 0.93963 0.87833 1.56484 0.90167 1.19892 0.88603 0.85542 0.92141 0.89259 1.46016 1.18010 1.09650 1.59508 1.17463 0.85895 0.82259 0.79808 1.90834 1.19422 1.82447 1.46704 1.23221 0.94234 0.96262 0.98108 1.22426 1.01381 0.90232 0.92216 1.21941 0.91325 1.02377 1.00975 1.20053 0.88069 0.89768 0.95884 1.42966 1.12389 1.10859 1.43065 1.23101 0.85174 1.02535 1.04271 1.22455 1.00889 0.90590 1.03192 1.70354 1.01260 1.31391 1.16080 1.25457 1.00211 0.80494 1.02551 1.73151 1.25528 0.96166 1.14690 1.73334 0.99237 1.20589 1.08714 1.23105 0.80842 0.72878 0.87102 1.93006 1.74309 1.96160 1.55376 1.93418 1.68264 1.53653 1.96187 1.93065 1.81497 1.48513 1.96982 0.91914 0.75291 0.80563 0.81772 0.79546 0.80329 0.76916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.28 9.50 55.43 0.53 -21.76 16 2 C 0.07 1.68 5.20 -17.82 -0.09 1.59 16 3 Si 0.92 19.66 29.54 -169.99 -5.02 14.64 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.55 -13.76 8.46 -34.44 -0.29 -14.05 16 8 H 0.08 1.89 7.74 -52.48 -0.41 1.49 16 9 C 0.24 5.80 2.21 -69.08 -0.15 5.65 16 10 H 0.09 2.33 7.58 -51.93 -0.39 1.93 16 11 N -0.68 -13.68 4.97 -55.84 -0.28 -13.96 16 12 C 0.56 10.45 7.34 -12.27 -0.09 10.36 16 13 O -0.52 -10.78 14.96 5.33 0.08 -10.70 16 14 C 0.03 0.43 6.83 -82.84 -0.57 -0.13 16 15 C -0.03 -0.35 9.72 -38.86 -0.38 -0.73 16 16 C -0.14 -1.12 9.58 -39.08 -0.37 -1.50 16 17 C 0.30 3.18 7.58 -154.18 -1.17 2.01 16 18 N -0.41 -3.98 2.98 -63.68 -0.19 -4.17 16 19 C -0.02 -0.21 11.19 -16.43 -0.18 -0.39 16 20 C -0.03 -0.25 11.85 -17.82 -0.21 -0.46 16 21 N -0.47 -4.95 11.24 -14.46 -0.16 -5.11 16 22 C 0.19 1.63 11.91 -89.54 -1.07 0.57 16 23 N -0.25 -3.31 11.07 31.34 0.35 -2.96 16 24 N -0.17 -2.55 10.73 33.32 0.36 -2.19 16 25 C 0.42 10.32 2.81 37.16 0.10 10.42 16 26 F -0.21 -5.00 16.94 2.25 0.04 -4.96 16 27 F -0.13 -3.59 12.91 2.25 0.03 -3.56 16 28 F -0.22 -5.28 15.67 2.25 0.04 -5.24 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.41 7.60 7.89 -40.82 -0.32 7.28 16 31 H 0.18 1.57 7.71 -52.49 -0.40 1.17 16 32 H 0.16 0.64 6.86 -52.48 -0.36 0.27 16 33 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.21 0.87 7.11 -52.49 -0.37 0.50 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -31.11 325.84 -6.04 -37.14 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.24 Total: 4.60 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: -4.47 Total: 13.33 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.60 Total: -50.15 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 9 Polarization: -13.86 SS G_CDS: 0.10 Total: -13.76 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.11 -6.04 -37.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812834.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.962 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds