Wall clock time and date at job start Sat Apr 11 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86806 * 119.99504 * 2 1 4 4 H 1.48501 * 109.46834 * 240.00408 * 3 2 1 5 5 H 1.48497 * 109.46897 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46927 * 120.00345 * 3 2 1 7 7 C 1.37870 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00247 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47052 * 59.99936 * 9 7 2 11 11 N 1.46491 * 109.47449 * 180.02562 * 9 7 2 12 12 C 1.34779 * 120.00347 * 205.00098 * 11 9 7 13 13 O 1.21541 * 119.99502 * 359.97438 * 12 11 9 14 14 C 1.47978 * 120.00347 * 179.97438 * 12 11 9 15 15 C 1.39921 * 120.11519 * 180.02562 * 14 12 11 16 16 C 1.38483 * 117.97202 * 179.70701 * 15 14 12 17 17 C 1.39355 * 118.02694 * 0.52632 * 16 15 14 18 18 N 1.39524 * 120.02856 * 179.74063 * 17 16 15 19 19 C 1.37225 * 126.49500 * 184.90117 * 18 17 16 20 20 C 1.34591 * 106.82547 * 180.25161 * 19 18 17 21 21 N 1.34177 * 108.23100 * 359.75930 * 20 19 18 22 22 C 1.30458 * 109.38651 * 359.97438 * 21 20 19 23 23 N 1.32693 * 119.93544 * 359.45913 * 17 16 15 24 24 N 1.28352 * 122.19792 * 0.28114 * 23 17 16 25 25 C 1.53004 * 109.46897 * 300.00003 * 9 7 2 26 26 F 1.39897 * 109.47142 * 300.00031 * 25 9 7 27 27 F 1.39904 * 109.47102 * 59.99907 * 25 9 7 28 28 F 1.39897 * 109.47191 * 179.97438 * 25 9 7 29 29 H 0.96997 * 120.00650 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00249 * 24.99642 * 11 9 7 31 31 H 1.08001 * 121.01658 * 359.95628 * 15 14 12 32 32 H 1.08003 * 120.98793 * 180.26803 * 16 15 14 33 33 H 1.08000 * 126.58795 * 0.04266 * 19 18 17 34 34 H 1.07994 * 125.88641 * 179.73900 * 20 19 18 35 35 H 1.08002 * 125.72353 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 7 2.2032 -3.6126 -0.0005 12 6 1.8372 -4.8122 -0.4938 13 8 0.7171 -4.9704 -0.9382 14 6 2.7990 -5.9368 -0.4943 15 6 2.4217 -7.1831 -1.0064 16 6 3.3589 -8.2025 -0.9906 17 6 4.6161 -7.9280 -0.4558 18 7 5.5902 -8.9261 -0.4141 19 6 6.8313 -8.8316 0.1637 20 6 7.4426 -10.0148 -0.0306 21 7 6.6021 -10.8161 -0.7029 22 6 5.4883 -10.1779 -0.9354 23 7 4.8877 -6.7151 0.0086 24 7 4.0232 -5.7665 -0.0093 25 6 0.3721 -2.5805 1.2491 26 9 1.1768 -2.5065 2.3910 27 9 -0.5371 -1.5172 1.2497 28 9 -0.3277 -3.7918 1.2488 29 1 -0.4851 0.8400 0.0004 30 1 3.0971 -3.4864 0.3544 31 1 1.4311 -7.3440 -1.4055 32 1 3.1211 -9.1825 -1.3774 33 1 7.2403 -7.9717 0.6732 34 1 8.4381 -10.2745 0.2976 35 1 4.6313 -10.5754 -1.4588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928812834.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:53 Heat of formation + Delta-G solvation = -51.368768 kcal Electronic energy + Delta-G solvation = -29059.529276 eV Core-core repulsion = 24259.159236 eV Total energy + Delta-G solvation = -4800.370040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.084 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.45456 -48.09250 -47.75433 -43.57327 -42.24234 -40.47719 -36.69666 -36.10606 -34.57229 -34.51609 -32.31451 -30.67732 -30.23203 -26.93809 -26.55171 -25.95740 -23.90285 -22.66164 -22.42361 -21.77223 -20.22056 -19.90938 -19.00218 -18.83449 -18.64919 -18.58359 -17.58501 -17.27555 -16.90142 -16.39202 -16.15859 -16.09406 -15.49330 -15.15206 -15.07133 -14.99633 -14.91562 -14.91240 -14.53624 -14.48058 -14.32372 -14.20137 -14.05630 -13.90205 -13.32088 -13.09731 -12.82940 -12.64174 -12.43228 -12.25882 -11.65489 -11.61729 -11.44296 -11.27431 -11.10458 -10.70473 -10.45829 -10.19556 -9.68364 -8.24204 -6.55024 -1.07760 -0.55971 0.80260 1.07471 1.46630 1.48242 1.56147 1.56824 1.85231 2.01490 2.32828 2.36556 2.49685 2.60255 2.91255 2.96805 3.16129 3.39973 3.59119 3.69451 3.74024 3.80207 3.85787 4.13170 4.22061 4.42420 4.48406 4.62669 4.72609 4.82753 5.02177 5.22459 5.46871 5.56250 5.60900 5.93218 6.42568 6.48842 6.80946 6.95671 7.14722 7.18372 8.68221 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.020590 B = 0.002740 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.541521 B =10214.898128 C =10905.342537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.020 3.980 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.566 4.566 8 H 0.089 0.911 9 C 0.251 3.749 10 H 0.061 0.939 11 N -0.687 5.687 12 C 0.566 3.434 13 O -0.547 6.547 14 C 0.009 3.991 15 C -0.029 4.029 16 C -0.106 4.106 17 C 0.299 3.701 18 N -0.416 5.416 19 C -0.043 4.043 20 C -0.029 4.029 21 N -0.506 5.506 22 C 0.207 3.793 23 N -0.272 5.272 24 N -0.194 5.194 25 C 0.414 3.586 26 F -0.204 7.204 27 F -0.147 7.147 28 F -0.217 7.217 29 H 0.271 0.729 30 H 0.417 0.583 31 H 0.195 0.805 32 H 0.220 0.780 33 H 0.190 0.810 34 H 0.198 0.802 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.717 -16.960 -2.325 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.603 4.603 8 H 0.107 0.893 9 C 0.145 3.855 10 H 0.079 0.921 11 N -0.336 5.336 12 C 0.350 3.650 13 O -0.424 6.424 14 C -0.139 4.139 15 C -0.058 4.058 16 C -0.136 4.136 17 C 0.064 3.936 18 N -0.100 5.100 19 C -0.170 4.170 20 C -0.172 4.172 21 N -0.223 5.223 22 C -0.074 4.074 23 N -0.119 5.119 24 N -0.040 5.040 25 C 0.358 3.642 26 F -0.186 7.186 27 F -0.129 7.129 28 F -0.199 7.199 29 H 0.080 0.920 30 H 0.255 0.745 31 H 0.212 0.788 32 H 0.237 0.763 33 H 0.207 0.793 34 H 0.214 0.786 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 8.985 -16.670 -2.141 19.058 hybrid contribution -0.744 1.101 0.325 1.368 sum 8.240 -15.569 -1.816 17.709 Atomic orbital electron populations 1.70490 1.07286 1.28402 1.44248 1.25923 0.95906 1.03446 0.93313 0.85250 0.78093 0.76936 0.79337 1.18734 1.20712 1.19283 1.21170 0.94515 0.88384 1.56223 0.89302 1.19484 0.88742 0.86874 0.90443 0.92127 1.45889 1.17643 1.09635 1.60456 1.17946 0.86270 0.82505 0.78322 1.90802 1.20896 1.83036 1.47624 1.22723 0.93891 0.96280 1.00977 1.22639 1.02681 0.89008 0.91442 1.22442 0.89053 1.03728 0.98366 1.20300 0.89175 0.89134 0.94942 1.43104 1.12274 1.11103 1.43561 1.23294 0.85587 1.03025 1.05140 1.22821 1.01581 0.90302 1.02495 1.70389 1.02380 1.32223 1.17312 1.26393 1.00733 0.79425 1.00896 1.73042 1.25422 0.97329 1.16134 1.73258 0.99476 1.21786 1.09511 1.23249 0.80798 0.72574 0.87591 1.92999 1.74178 1.96150 1.55270 1.93388 1.68795 1.54386 1.96289 1.93058 1.81511 1.48284 1.97004 0.91951 0.74547 0.78757 0.76335 0.79276 0.78554 0.72629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.05 9.50 21.45 0.20 -46.84 16 2 C 0.02 1.02 5.20 84.65 0.44 1.46 16 3 Si 0.98 40.18 29.54 68.60 2.03 42.20 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.57 -28.43 8.46 25.60 0.22 -28.21 16 8 H 0.09 4.19 7.74 -2.91 -0.02 4.17 16 9 C 0.25 12.30 2.21 44.25 0.10 12.40 16 10 H 0.06 3.31 7.58 -2.39 -0.02 3.29 16 11 N -0.69 -28.13 4.97 -448.85 -2.23 -30.37 16 12 C 0.57 21.21 7.34 86.83 0.64 21.85 16 13 O -0.55 -23.07 14.96 -3.85 -0.06 -23.13 16 14 C 0.01 0.27 6.83 41.99 0.29 0.55 16 15 C -0.03 -0.54 9.72 22.74 0.22 -0.32 16 16 C -0.11 -1.31 9.58 22.60 0.22 -1.09 16 17 C 0.30 5.60 7.58 132.85 1.01 6.61 16 18 N -0.42 -6.93 2.98 -355.39 -1.06 -7.98 16 19 C -0.04 -0.74 11.19 83.01 0.93 0.19 16 20 C -0.03 -0.48 11.85 83.50 0.99 0.50 16 21 N -0.51 -9.20 11.24 -199.65 -2.24 -11.45 16 22 C 0.21 2.67 11.91 179.97 2.14 4.81 16 23 N -0.27 -6.97 11.07 -54.76 -0.61 -7.58 16 24 N -0.19 -5.67 10.73 -48.50 -0.52 -6.20 16 25 C 0.41 20.95 2.81 71.98 0.20 21.15 16 26 F -0.20 -10.00 16.94 44.97 0.76 -9.24 16 27 F -0.15 -8.08 12.91 44.97 0.58 -7.50 16 28 F -0.22 -10.66 15.67 44.97 0.70 -9.95 16 29 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.42 15.79 7.89 -92.70 -0.73 15.06 16 31 H 0.20 2.89 7.71 -2.91 -0.02 2.87 16 32 H 0.22 0.19 6.86 -2.91 -0.02 0.17 16 33 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.26 0.57 7.11 -2.91 -0.02 0.55 16 Total: -1.00 -69.48 325.84 5.41 -64.07 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.47 Total: 14.06 kcal Atomic # 6 Polarization: 32.51 SS G_CDS: 7.39 Total: 39.90 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -6.46 Total: -110.41 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.06 Total: -23.13 kcal Atomic # 9 Polarization: -28.74 SS G_CDS: 2.05 Total: -26.69 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.20 kcal Total: -69.48 5.41 -64.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812834.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.699 kcal (2) G-P(sol) polarization free energy of solvation -69.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds