Wall clock time and date at job start Sat Apr 11 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00405 * 2 1 4 4 H 1.48504 * 109.47415 * 270.00197 * 3 2 1 5 5 H 1.48508 * 109.47052 * 30.00294 * 3 2 1 6 6 H 1.48502 * 109.47455 * 150.00118 * 3 2 1 7 7 C 1.37877 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00239 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.08990 * 109.47295 * 60.00111 * 9 7 2 11 11 N 1.46503 * 109.47034 * 180.02562 * 9 7 2 12 12 C 1.34773 * 120.00002 * 204.99827 * 11 9 7 13 13 O 1.21519 * 120.00085 * 359.97438 * 12 11 9 14 14 C 1.48153 * 120.00319 * 179.97438 * 12 11 9 15 15 C 1.39938 * 120.89178 * 0.02562 * 14 12 11 16 16 C 1.38065 * 119.13696 * 179.97438 * 15 14 12 17 17 N 1.31831 * 120.97794 * 359.97438 * 16 15 14 18 18 C 1.32231 * 121.97643 * 0.02675 * 17 16 15 19 19 N 1.39874 * 119.62319 * 179.97438 * 18 17 16 20 20 C 1.34801 * 126.84813 * 359.97438 * 19 18 17 21 21 N 1.30812 * 108.01840 * 179.97438 * 20 19 18 22 22 C 1.33286 * 109.85089 * 0.02562 * 21 20 19 23 23 N 1.30725 * 109.01221 * 359.74423 * 22 21 20 24 24 C 1.38904 * 120.75145 * 0.02562 * 18 17 16 25 25 C 1.53006 * 109.46754 * 299.99669 * 9 7 2 26 26 F 1.39895 * 109.47254 * 300.00371 * 25 9 7 27 27 F 1.39902 * 109.46693 * 60.00683 * 25 9 7 28 28 F 1.39897 * 109.46801 * 179.97438 * 25 9 7 29 29 H 0.97002 * 119.99635 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00134 * 24.99315 * 11 9 7 31 31 H 1.08005 * 120.43441 * 0.24788 * 15 14 12 32 32 H 1.08004 * 119.50867 * 179.97438 * 16 15 14 33 33 H 1.08003 * 125.98701 * 359.94813 * 20 19 18 34 34 H 1.07996 * 125.49397 * 179.97438 * 22 21 20 35 35 H 1.07999 * 120.52426 * 179.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6239 -2.5567 -0.8902 11 7 2.2029 -3.6127 -0.0005 12 6 1.8367 -4.8123 -0.4938 13 8 0.7167 -4.9704 -0.9381 14 6 2.7995 -5.9383 -0.4943 15 6 4.0936 -5.7773 0.0131 16 6 4.9612 -6.8512 -0.0048 17 7 4.5866 -8.0181 -0.4905 18 6 3.3744 -8.2162 -0.9802 19 7 3.0293 -9.4747 -1.4838 20 6 3.8163 -10.5679 -1.5366 21 7 3.1246 -11.5388 -2.0751 22 6 1.9001 -11.1082 -2.3781 23 7 1.7921 -9.8527 -2.0305 24 6 2.4401 -7.1885 -1.0011 25 6 0.3718 -2.5804 1.2491 26 9 1.1766 -2.5065 2.3910 27 9 -0.5373 -1.5170 1.2496 28 9 -0.3282 -3.7916 1.2489 29 1 -0.4850 0.8401 0.0004 30 1 3.0968 -3.4867 0.3544 31 1 4.4083 -4.8266 0.4176 32 1 5.9615 -6.7335 0.3850 33 1 4.8388 -10.6308 -1.1946 34 1 1.1215 -11.7019 -2.8337 35 1 1.4512 -7.3543 -1.4023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928813777.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:58 Heat of formation + Delta-G solvation = -25.878892 kcal Electronic energy + Delta-G solvation = -29181.360435 eV Core-core repulsion = 24382.095719 eV Total energy + Delta-G solvation = -4799.264716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.084 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.47646 -46.13398 -45.73239 -42.60928 -40.70192 -38.88662 -34.98635 -34.59729 -33.12970 -32.58471 -31.55419 -30.28488 -28.63413 -25.32357 -24.74976 -24.41949 -22.79253 -21.90643 -21.46289 -20.32824 -19.09166 -17.64633 -17.08346 -17.02770 -16.76321 -16.40892 -16.30007 -16.02713 -15.63110 -15.33635 -15.06301 -14.72966 -14.59892 -14.38827 -14.16686 -13.79550 -13.30886 -13.05304 -12.66861 -12.52744 -12.49202 -12.45528 -12.31636 -12.07706 -11.92972 -11.32547 -11.27436 -10.98159 -10.94611 -10.56074 -10.48023 -10.30148 -10.19725 -10.14589 -9.82502 -9.62119 -8.96662 -8.85410 -8.51650 -6.35480 -4.60919 0.17369 0.56866 1.54885 1.63055 2.59976 2.96022 3.11115 3.16743 3.19940 3.30888 3.65604 3.87447 4.05029 4.10246 4.18331 4.40184 4.47883 4.61646 4.71750 4.81577 4.86162 4.95339 5.36643 5.45954 5.69177 5.72851 5.75700 5.81867 5.99464 6.05519 6.07887 6.57760 6.73315 6.88526 7.22071 7.28935 7.50036 7.72914 8.00570 8.33082 8.53677 9.07542 10.56181 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.002830 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.905839 B = 9891.932658 C =10433.619818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.556 4.556 8 H 0.079 0.921 9 C 0.245 3.755 10 H 0.089 0.911 11 N -0.698 5.698 12 C 0.546 3.454 13 O -0.515 6.515 14 C -0.052 4.052 15 C -0.146 4.146 16 C 0.131 3.869 17 N -0.492 5.492 18 C 0.351 3.649 19 N -0.331 5.331 20 C 0.289 3.711 21 N -0.542 5.542 22 C 0.211 3.789 23 N -0.303 5.303 24 C -0.100 4.100 25 C 0.417 3.583 26 F -0.208 7.208 27 F -0.135 7.135 28 F -0.217 7.217 29 H 0.270 0.730 30 H 0.400 0.600 31 H 0.153 0.847 32 H 0.178 0.822 33 H 0.228 0.772 34 H 0.227 0.773 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.736 -12.884 -0.392 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.593 4.593 8 H 0.097 0.903 9 C 0.140 3.860 10 H 0.107 0.893 11 N -0.348 5.348 12 C 0.330 3.670 13 O -0.391 6.391 14 C -0.064 4.064 15 C -0.167 4.167 16 C -0.027 4.027 17 N -0.206 5.206 18 C 0.124 3.876 19 N -0.116 5.116 20 C -0.007 4.007 21 N -0.268 5.268 22 C -0.092 4.092 23 N -0.128 5.128 24 C -0.123 4.123 25 C 0.361 3.639 26 F -0.190 7.190 27 F -0.116 7.116 28 F -0.199 7.199 29 H 0.081 0.919 30 H 0.235 0.765 31 H 0.171 0.829 32 H 0.195 0.805 33 H 0.244 0.756 34 H 0.243 0.757 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.722 -13.424 -0.849 16.031 hybrid contribution 0.283 1.597 0.613 1.734 sum 9.005 -11.827 -0.236 14.866 Atomic orbital electron populations 1.70389 1.05909 1.27622 1.43091 1.25086 0.95180 1.00217 0.93877 0.86180 0.79575 0.81470 0.78451 1.20113 1.20713 1.19442 1.20842 0.93804 0.87890 1.56725 0.90282 1.19841 0.88636 0.85484 0.92078 0.89349 1.45995 1.17461 1.10178 1.61152 1.18056 0.86886 0.82654 0.79436 1.90822 1.20185 1.82614 1.45445 1.20526 0.94558 0.94399 0.96875 1.22525 0.93213 1.01602 0.99344 1.22495 1.00014 0.85688 0.94462 1.66656 1.15572 1.26615 1.11710 1.17483 0.90628 0.82982 0.96490 1.47488 1.10398 1.08510 1.45219 1.26399 0.99182 0.81108 0.93975 1.70714 1.05269 1.30258 1.20586 1.26302 0.95142 0.90295 0.97420 1.78305 0.99379 1.16064 1.19057 1.21769 1.01458 0.90491 0.98570 1.23102 0.80905 0.72912 0.87029 1.92993 1.74340 1.96182 1.55493 1.93415 1.68296 1.53689 1.96177 1.93078 1.81462 1.48425 1.96964 0.91924 0.76497 0.82936 0.80548 0.75607 0.75712 0.81986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.07 9.50 55.43 0.53 -21.55 16 2 C 0.07 1.63 5.20 -17.82 -0.09 1.54 16 3 Si 0.92 19.15 29.54 -169.99 -5.02 14.13 16 4 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.56 -13.31 8.46 -34.44 -0.29 -13.60 16 8 H 0.08 1.75 7.74 -52.48 -0.41 1.35 16 9 C 0.24 5.72 2.21 -69.08 -0.15 5.57 16 10 H 0.09 2.32 7.58 -51.93 -0.39 1.93 16 11 N -0.70 -13.04 4.94 -55.78 -0.28 -13.32 16 12 C 0.55 10.12 7.33 -12.19 -0.09 10.03 16 13 O -0.52 -11.55 15.01 5.35 0.08 -11.47 16 14 C -0.05 -0.74 5.91 -104.68 -0.62 -1.36 16 15 C -0.15 -1.50 9.61 -39.01 -0.37 -1.87 16 16 C 0.13 1.14 11.17 -17.62 -0.20 0.95 16 17 N -0.49 -5.32 9.87 -12.33 -0.12 -5.44 16 18 C 0.35 4.52 7.56 -154.39 -1.17 3.35 16 19 N -0.33 -4.18 3.81 -13.36 -0.05 -4.23 16 20 C 0.29 3.04 12.26 -90.33 -1.11 1.93 16 21 N -0.54 -6.12 11.19 -15.74 -0.18 -6.30 16 22 C 0.21 2.25 13.03 -91.76 -1.20 1.05 16 23 N -0.30 -4.00 12.02 29.30 0.35 -3.65 16 24 C -0.10 -1.44 9.29 -38.83 -0.36 -1.80 16 25 C 0.42 10.22 2.81 37.16 0.10 10.32 16 26 F -0.21 -4.87 16.94 2.25 0.04 -4.83 16 27 F -0.13 -3.60 12.91 2.25 0.03 -3.57 16 28 F -0.22 -5.33 15.67 2.25 0.04 -5.30 16 29 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.40 6.09 6.68 -40.82 -0.27 5.82 16 31 H 0.15 1.21 6.53 -52.48 -0.34 0.86 16 32 H 0.18 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.23 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.23 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.16 2.59 7.41 -52.49 -0.39 2.20 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -31.82 325.97 -7.42 -39.24 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -2.21 Total: 5.25 kcal Atomic # 6 Polarization: 21.65 SS G_CDS: -5.54 Total: 16.10 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.25 Total: -54.48 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 9 Polarization: -13.80 SS G_CDS: 0.10 Total: -13.70 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.82 -7.42 -39.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813777.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.365 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds