Wall clock time and date at job start Sat Apr 11 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00405 * 2 1 4 4 H 1.48504 * 109.47415 * 270.00197 * 3 2 1 5 5 H 1.48508 * 109.47052 * 30.00294 * 3 2 1 6 6 H 1.48502 * 109.47455 * 150.00118 * 3 2 1 7 7 C 1.37877 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00239 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.08990 * 109.47295 * 60.00111 * 9 7 2 11 11 N 1.46503 * 109.47034 * 180.02562 * 9 7 2 12 12 C 1.34773 * 120.00002 * 204.99827 * 11 9 7 13 13 O 1.21519 * 120.00085 * 359.97438 * 12 11 9 14 14 C 1.48153 * 120.00319 * 179.97438 * 12 11 9 15 15 C 1.39938 * 120.89178 * 0.02562 * 14 12 11 16 16 C 1.38065 * 119.13696 * 179.97438 * 15 14 12 17 17 N 1.31831 * 120.97794 * 359.97438 * 16 15 14 18 18 C 1.32231 * 121.97643 * 0.02675 * 17 16 15 19 19 N 1.39874 * 119.62319 * 179.97438 * 18 17 16 20 20 C 1.34801 * 126.84813 * 359.97438 * 19 18 17 21 21 N 1.30812 * 108.01840 * 179.97438 * 20 19 18 22 22 C 1.33286 * 109.85089 * 0.02562 * 21 20 19 23 23 N 1.30725 * 109.01221 * 359.74423 * 22 21 20 24 24 C 1.38904 * 120.75145 * 0.02562 * 18 17 16 25 25 C 1.53006 * 109.46754 * 299.99669 * 9 7 2 26 26 F 1.39895 * 109.47254 * 300.00371 * 25 9 7 27 27 F 1.39902 * 109.46693 * 60.00683 * 25 9 7 28 28 F 1.39897 * 109.46801 * 179.97438 * 25 9 7 29 29 H 0.97002 * 119.99635 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00134 * 24.99315 * 11 9 7 31 31 H 1.08005 * 120.43441 * 0.24788 * 15 14 12 32 32 H 1.08004 * 119.50867 * 179.97438 * 16 15 14 33 33 H 1.08003 * 125.98701 * 359.94813 * 20 19 18 34 34 H 1.07996 * 125.49397 * 179.97438 * 22 21 20 35 35 H 1.07999 * 120.52426 * 179.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6239 -2.5567 -0.8902 11 7 2.2029 -3.6127 -0.0005 12 6 1.8367 -4.8123 -0.4938 13 8 0.7167 -4.9704 -0.9381 14 6 2.7995 -5.9383 -0.4943 15 6 4.0936 -5.7773 0.0131 16 6 4.9612 -6.8512 -0.0048 17 7 4.5866 -8.0181 -0.4905 18 6 3.3744 -8.2162 -0.9802 19 7 3.0293 -9.4747 -1.4838 20 6 3.8163 -10.5679 -1.5366 21 7 3.1246 -11.5388 -2.0751 22 6 1.9001 -11.1082 -2.3781 23 7 1.7921 -9.8527 -2.0305 24 6 2.4401 -7.1885 -1.0011 25 6 0.3718 -2.5804 1.2491 26 9 1.1766 -2.5065 2.3910 27 9 -0.5373 -1.5170 1.2496 28 9 -0.3282 -3.7916 1.2489 29 1 -0.4850 0.8401 0.0004 30 1 3.0968 -3.4867 0.3544 31 1 4.4083 -4.8266 0.4176 32 1 5.9615 -6.7335 0.3850 33 1 4.8388 -10.6308 -1.1946 34 1 1.1215 -11.7019 -2.8337 35 1 1.4512 -7.3543 -1.4023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928813777.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:58 Heat of formation + Delta-G solvation = -44.850115 kcal Electronic energy + Delta-G solvation = -29182.183089 eV Core-core repulsion = 24382.095719 eV Total energy + Delta-G solvation = -4800.087370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.084 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.46179 -48.09988 -47.76496 -43.46228 -41.75301 -40.26745 -36.68812 -35.55196 -34.58702 -33.90413 -32.43255 -31.25616 -30.29391 -26.71060 -26.29785 -25.45252 -23.92519 -23.14082 -22.58640 -21.73752 -20.34073 -19.09129 -18.93239 -18.70873 -18.43212 -17.93714 -17.20982 -17.14617 -16.82886 -16.65710 -16.48779 -16.07065 -15.83075 -15.29165 -15.08102 -15.03569 -14.98857 -14.88871 -14.55462 -14.48381 -14.32828 -14.08144 -13.94334 -13.35698 -13.24689 -13.10631 -12.81532 -12.61836 -12.23770 -12.14639 -11.63281 -11.53309 -11.32621 -11.21296 -11.07820 -10.88856 -10.70223 -10.22966 -9.83448 -8.23136 -6.54757 -0.75205 -0.42014 0.71172 0.78803 1.48157 1.49215 1.60536 1.67110 1.80544 1.88601 2.36830 2.46090 2.63009 2.92839 3.05797 3.21901 3.35372 3.38733 3.69794 3.73005 3.79384 3.81375 3.96221 4.12754 4.19067 4.51145 4.52866 4.82294 4.87382 4.99386 5.14158 5.23879 5.30150 5.48451 5.61772 5.74570 6.36928 6.47117 6.52646 6.88701 7.04977 7.19847 8.69710 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.002830 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.905839 B = 9891.932658 C =10433.619818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.984 3.016 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.253 1.253 7 C -0.561 4.561 8 H 0.101 0.899 9 C 0.251 3.749 10 H 0.050 0.950 11 N -0.688 5.688 12 C 0.544 3.456 13 O -0.565 6.565 14 C -0.069 4.069 15 C -0.130 4.130 16 C 0.151 3.849 17 N -0.482 5.482 18 C 0.347 3.653 19 N -0.344 5.344 20 C 0.297 3.703 21 N -0.557 5.557 22 C 0.217 3.783 23 N -0.347 5.347 24 C -0.120 4.120 25 C 0.413 3.587 26 F -0.200 7.200 27 F -0.150 7.150 28 F -0.221 7.221 29 H 0.269 0.731 30 H 0.418 0.582 31 H 0.183 0.817 32 H 0.232 0.768 33 H 0.260 0.740 34 H 0.259 0.741 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.661 -13.214 0.440 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.177 1.177 7 C -0.597 4.597 8 H 0.119 0.881 9 C 0.145 3.855 10 H 0.067 0.933 11 N -0.340 5.340 12 C 0.331 3.669 13 O -0.444 6.444 14 C -0.080 4.080 15 C -0.151 4.151 16 C -0.007 4.007 17 N -0.196 5.196 18 C 0.121 3.879 19 N -0.130 5.130 20 C 0.002 3.998 21 N -0.284 5.284 22 C -0.085 4.085 23 N -0.173 5.173 24 C -0.144 4.144 25 C 0.356 3.644 26 F -0.182 7.182 27 F -0.131 7.131 28 F -0.203 7.203 29 H 0.079 0.921 30 H 0.257 0.743 31 H 0.200 0.800 32 H 0.248 0.752 33 H 0.276 0.724 34 H 0.275 0.725 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.689 -13.791 -0.013 18.741 hybrid contribution -0.896 1.600 0.367 1.870 sum 11.794 -12.191 0.353 16.966 Atomic orbital electron populations 1.70532 1.07637 1.28265 1.44491 1.26020 0.95854 1.03820 0.93391 0.85142 0.78686 0.76918 0.78515 1.19714 1.21379 1.17655 1.21241 0.94825 0.87833 1.55833 0.88148 1.19422 0.88892 0.87256 0.89974 0.93270 1.45748 1.17549 1.09277 1.61385 1.18696 0.87017 0.83305 0.77875 1.90791 1.22716 1.83462 1.47434 1.20132 0.95534 0.92582 0.99756 1.22882 0.91135 1.03519 0.97515 1.23425 1.01401 0.83980 0.91858 1.66858 1.14019 1.27522 1.11225 1.17471 0.90930 0.82763 0.96782 1.47540 1.10624 1.08923 1.45872 1.27097 0.99973 0.80153 0.92606 1.70770 1.05624 1.30652 1.21311 1.27014 0.95669 0.89763 0.96033 1.78292 1.00675 1.17501 1.20806 1.21539 1.01020 0.91616 1.00227 1.23316 0.80896 0.72365 0.87791 1.92992 1.73957 1.96129 1.55081 1.93386 1.68948 1.54456 1.96308 1.93068 1.81658 1.48576 1.97025 0.92145 0.74272 0.79996 0.75158 0.72438 0.72537 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.12 9.50 21.45 0.20 -46.92 16 2 C 0.01 0.72 5.20 84.65 0.44 1.16 16 3 Si 0.98 38.43 29.54 68.60 2.03 40.45 16 4 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.29 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 7 C -0.56 -26.46 8.46 25.60 0.22 -26.25 16 8 H 0.10 4.20 7.74 -2.91 -0.02 4.17 16 9 C 0.25 11.97 2.21 44.25 0.10 12.06 16 10 H 0.05 2.74 7.58 -2.39 -0.02 2.72 16 11 N -0.69 -25.51 4.94 -448.67 -2.22 -27.73 16 12 C 0.54 20.70 7.33 86.88 0.64 21.34 16 13 O -0.57 -26.99 15.01 -3.77 -0.06 -27.05 16 14 C -0.07 -1.93 5.91 -19.90 -0.12 -2.05 16 15 C -0.13 -2.22 9.61 22.64 0.22 -2.00 16 16 C 0.15 1.91 11.17 84.65 0.95 2.85 16 17 N -0.48 -8.83 9.87 -192.92 -1.90 -10.73 16 18 C 0.35 8.60 7.56 132.76 1.00 9.61 16 19 N -0.34 -8.53 3.81 -196.17 -0.75 -9.28 16 20 C 0.30 5.74 12.26 180.25 2.21 7.95 16 21 N -0.56 -11.87 11.19 -203.70 -2.28 -14.15 16 22 C 0.22 4.52 13.03 180.75 2.35 6.87 16 23 N -0.35 -9.39 12.02 -61.21 -0.74 -10.12 16 24 C -0.12 -3.58 9.29 22.76 0.21 -3.37 16 25 C 0.41 20.64 2.81 71.98 0.20 20.84 16 26 F -0.20 -9.25 16.94 44.97 0.76 -8.49 16 27 F -0.15 -8.25 12.91 44.97 0.58 -7.67 16 28 F -0.22 -11.24 15.67 44.97 0.70 -10.53 16 29 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 30 H 0.42 11.86 6.68 -92.71 -0.62 11.24 16 31 H 0.18 1.98 6.53 -2.91 -0.02 1.96 16 32 H 0.23 0.46 8.06 -2.91 -0.02 0.44 16 33 H 0.26 2.85 8.06 -2.91 -0.02 2.82 16 34 H 0.26 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.13 4.67 7.41 -2.91 -0.02 4.65 16 Total: -1.00 -73.35 325.97 5.34 -68.01 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.58 Total: 15.19 kcal Atomic # 6 Polarization: 40.60 SS G_CDS: 8.42 Total: 49.02 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -7.68 Total: -118.93 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.06 Total: -27.05 kcal Atomic # 9 Polarization: -28.74 SS G_CDS: 2.05 Total: -26.69 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.45 kcal Total: -73.35 5.34 -68.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928813777.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.159 kcal (2) G-P(sol) polarization free energy of solvation -73.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds