Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99780 * 2 1 4 4 H 1.48502 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47095 * 299.99567 * 3 2 1 6 6 H 1.48505 * 109.47148 * 59.99554 * 3 2 1 7 7 C 1.38805 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00210 * 163.62340 * 7 2 1 9 9 N 1.36937 * 120.00174 * 343.62925 * 7 2 1 10 10 C 1.47170 * 121.07003 * 153.84726 * 9 7 2 11 11 C 1.53278 * 108.54959 * 128.88512 * 10 9 7 12 12 O 1.43094 * 109.22287 * 52.90632 * 11 10 9 13 13 C 1.42065 * 114.33549 * 298.84805 * 12 11 10 14 14 C 1.54817 * 110.30827 * 297.84142 * 13 12 11 15 15 C 1.55022 * 101.62759 * 275.97105 * 14 13 12 16 16 N 1.47489 * 104.89719 * 323.72370 * 15 14 13 17 17 C 1.34781 * 125.66043 * 204.01005 * 16 15 14 18 18 O 1.21588 * 119.99552 * 180.02562 * 17 16 15 19 19 C 1.47515 * 119.99941 * 0.02562 * 17 16 15 20 20 C 1.36789 * 126.92279 * 179.71307 * 19 17 16 21 21 C 1.41414 * 103.83353 * 179.87365 * 20 19 17 22 22 Cl 1.73602 * 126.72302 * 180.13465 * 21 20 19 23 23 N 1.30223 * 106.55051 * 0.38549 * 21 20 19 24 24 O 1.20890 * 111.96113 * 359.74889 * 23 21 20 25 25 C 1.47183 * 108.67497 * 24.01288 * 16 15 14 26 26 C 1.47308 * 121.06258 * 333.86714 * 9 7 2 27 27 H 0.96997 * 120.00176 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.62160 * 248.60711 * 10 9 7 29 29 H 1.09000 * 109.61965 * 8.97809 * 10 9 7 30 30 H 1.08998 * 109.50911 * 172.83094 * 11 10 9 31 31 H 1.08997 * 109.51212 * 292.98471 * 11 10 9 32 32 H 1.08992 * 110.87880 * 157.91390 * 14 13 12 33 33 H 1.09001 * 111.08445 * 34.11014 * 14 13 12 34 34 H 1.09004 * 110.35775 * 204.86981 * 15 14 13 35 35 H 1.08999 * 110.35916 * 82.57823 * 15 14 13 36 36 H 1.07994 * 128.08311 * 359.97188 * 20 19 17 37 37 H 1.08997 * 109.91290 * 117.87220 * 25 16 15 38 38 H 1.09005 * 109.90712 * 238.94947 * 25 16 15 39 39 H 1.08994 * 109.67702 * 109.63899 * 26 9 7 40 40 H 1.09003 * 109.70938 * 349.10927 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0575 -1.2211 -0.2632 9 7 1.3673 -2.3638 0.3353 10 6 1.8352 -3.6640 -0.1713 11 6 1.9863 -4.6235 1.0144 12 8 0.7646 -4.6484 1.7590 13 6 0.3886 -3.3937 2.3091 14 6 1.4577 -2.9072 3.3177 15 6 1.0279 -3.6476 4.6101 16 7 -0.4464 -3.6591 4.5680 17 6 -1.2620 -3.7697 5.6353 18 8 -2.4681 -3.7681 5.4813 19 6 -0.6915 -3.8925 6.9900 20 6 -1.3821 -4.0065 8.1653 21 6 -0.3675 -4.0948 9.1464 22 17 -0.5921 -4.2609 10.8598 23 7 0.7681 -4.0217 8.5134 24 8 0.6139 -3.9094 7.3196 25 6 -0.8789 -3.5299 3.1671 26 6 0.1849 -2.3522 1.2137 27 1 -0.4850 0.8400 -0.0004 28 1 1.1075 -4.0653 -0.8767 29 1 2.7967 -3.5383 -0.6690 30 1 2.2087 -5.6250 0.6461 31 1 2.7976 -4.2827 1.6575 32 1 1.4037 -1.8267 3.4499 33 1 2.4572 -3.2116 3.0070 34 1 1.3778 -3.1083 5.4903 35 1 1.4151 -4.6665 4.6100 36 1 -2.4521 -4.0263 8.3099 37 1 -1.4364 -4.4172 2.8673 38 1 -1.5024 -2.6433 3.0515 39 1 -0.7051 -2.5980 0.6345 40 1 0.0698 -1.3654 1.6623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972642282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = 9.527616 kcal Electronic energy + Delta-G solvation = -28100.711498 eV Core-core repulsion = 23945.946358 eV Total energy + Delta-G solvation = -4154.765140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.41193 -41.66069 -40.21951 -38.29471 -37.68667 -36.25126 -34.96867 -33.76647 -33.20942 -32.55298 -30.95478 -29.14374 -27.78708 -25.67254 -24.96209 -24.86203 -23.72122 -22.98752 -21.61962 -20.46786 -19.25720 -19.23240 -18.94256 -17.75559 -17.57359 -17.17548 -16.90219 -16.45759 -16.16244 -15.87002 -15.73158 -15.34129 -15.17878 -14.96191 -14.53916 -14.38705 -14.21617 -13.92117 -13.73818 -13.60497 -13.50324 -13.08992 -12.84096 -12.64513 -12.47144 -12.35974 -12.26840 -12.09399 -11.85478 -11.81880 -11.62956 -11.28537 -11.13160 -11.08895 -10.76072 -10.45406 -9.93946 -8.69817 -7.87715 -5.33367 -0.55706 0.23076 0.56084 1.14881 1.47190 1.50698 1.59585 1.68245 1.82040 2.49653 2.74909 2.88266 3.24292 3.34770 3.46081 3.51532 3.53076 3.71952 3.87788 3.97358 4.24926 4.30770 4.40938 4.50220 4.51790 4.54284 4.62686 4.70043 4.78039 4.90506 4.97815 5.06671 5.13269 5.15570 5.29879 5.54620 5.65389 6.08848 6.31922 6.40842 6.46935 6.70070 7.09643 7.78479 8.32520 9.18519 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.016602 B = 0.002854 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.108793 B = 9809.718081 C =10394.489951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.254 4.254 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.102 3.898 11 C 0.053 3.947 12 O -0.380 6.380 13 C 0.094 3.906 14 C -0.137 4.137 15 C 0.103 3.897 16 N -0.596 5.596 17 C 0.618 3.382 18 O -0.540 6.540 19 C -0.066 4.066 20 C -0.124 4.124 21 C 0.051 3.949 22 Cl 0.049 6.951 23 N -0.341 5.341 24 O 0.139 5.861 25 C 0.131 3.869 26 C 0.174 3.826 27 H 0.250 0.750 28 H 0.014 0.986 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.215 0.785 37 H 0.083 0.917 38 H 0.080 0.920 39 H -0.004 1.004 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 -10.437 16.990 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.225 1.225 6 H -0.218 1.218 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.333 5.333 10 C -0.024 4.024 11 C -0.024 4.024 12 O -0.299 6.299 13 C 0.053 3.947 14 C -0.175 4.175 15 C -0.018 4.018 16 N -0.328 5.328 17 C 0.404 3.596 18 O -0.418 6.418 19 C -0.132 4.132 20 C -0.147 4.147 21 C -0.132 4.132 22 Cl 0.077 6.923 23 N -0.042 5.042 24 O 0.062 5.938 25 C 0.009 3.991 26 C 0.048 3.952 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.232 0.768 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.014 0.986 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.154 -10.520 17.538 20.564 hybrid contribution -0.624 1.373 -0.420 1.566 sum 1.530 -9.147 17.117 19.468 Atomic orbital electron populations 1.70165 1.06607 1.25785 1.55656 1.25736 0.95963 1.01314 1.01399 0.85270 0.78854 0.80142 0.76572 1.18760 1.22474 1.21825 1.19518 0.92767 0.85212 1.40843 0.90778 1.44333 1.32742 1.02252 1.53972 1.21813 0.98630 0.86540 0.95377 1.23188 0.85978 1.00766 0.92501 1.87677 1.42592 1.29548 1.70074 1.22372 0.93661 0.85615 0.93094 1.23149 1.00266 1.00628 0.93478 1.22709 0.77325 1.02450 0.99339 1.48457 1.08790 1.69411 1.06123 1.16116 0.84934 0.77729 0.80778 1.90885 1.13857 1.52656 1.84389 1.23816 0.84040 1.08883 0.96431 1.23009 1.03185 1.01043 0.87448 1.24200 0.90031 1.07253 0.91690 1.98437 1.96122 1.95901 1.01838 1.73847 1.23277 1.16679 0.90413 1.85153 1.25211 1.66182 1.17230 1.21701 0.95867 1.02995 0.78561 1.20922 0.88098 0.96618 0.89602 0.94124 0.96778 0.90809 0.86255 0.91877 0.90883 0.88121 0.88308 0.88656 0.76813 0.89851 0.90229 0.98564 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.13 11.13 21.65 0.24 -52.89 16 2 C -0.05 -2.58 4.96 84.86 0.42 -2.16 16 3 Si 0.96 42.80 29.58 68.60 2.03 44.83 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.25 -12.91 9.66 84.03 0.81 -12.10 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 9 N -0.61 -28.27 2.95 -698.63 -2.06 -30.33 16 10 C 0.10 3.83 6.72 86.34 0.58 4.41 16 11 C 0.05 1.55 6.77 72.08 0.49 2.04 16 12 O -0.38 -12.64 10.22 -148.97 -1.52 -14.16 16 13 C 0.09 3.27 0.84 -10.11 -0.01 3.26 16 14 C -0.14 -4.06 5.93 31.91 0.19 -3.88 16 15 C 0.10 2.45 6.21 86.88 0.54 2.99 16 16 N -0.60 -16.65 3.33 -816.05 -2.72 -19.37 16 17 C 0.62 17.13 7.85 86.69 0.68 17.81 16 18 O -0.54 -17.84 17.24 -3.99 -0.07 -17.91 16 19 C -0.07 -1.48 7.06 24.38 0.17 -1.31 16 20 C -0.12 -2.32 10.96 22.71 0.25 -2.07 16 21 C 0.05 0.98 7.97 85.71 0.68 1.67 16 22 Cl 0.05 0.76 29.33 -2.72 -0.08 0.68 16 23 N -0.34 -7.53 12.05 -51.02 -0.61 -8.14 16 24 O 0.14 3.01 8.57 65.83 0.56 3.57 16 25 C 0.13 4.25 6.23 86.47 0.54 4.79 16 26 C 0.17 7.86 3.94 86.07 0.34 8.20 16 27 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 2.59 7.96 -2.39 -0.02 2.57 16 30 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.06 1.72 6.14 -2.39 -0.01 1.71 16 32 H 0.07 2.42 7.86 -2.39 -0.02 2.40 16 33 H 0.10 2.83 6.00 -2.39 -0.01 2.81 16 34 H 0.10 2.04 6.28 -2.38 -0.01 2.03 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.22 3.02 8.06 -2.91 -0.02 3.00 16 37 H 0.08 2.69 8.06 -2.39 -0.02 2.67 16 38 H 0.08 2.78 7.79 -2.38 -0.02 2.76 16 39 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.07 3.54 5.99 -2.39 -0.01 3.53 16 Total: -1.00 -62.82 343.74 2.54 -60.28 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.09 Total: 9.81 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 5.68 Total: 23.64 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -5.16 Total: -110.73 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.03 Total: -28.50 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 17 Polarization: 0.76 SS G_CDS: -0.08 Total: 0.68 kcal Total: -62.82 2.54 -60.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972642282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.807 kcal (2) G-P(sol) polarization free energy of solvation -62.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds