Wall clock time and date at job start Sat Apr 11 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00548 * 2 1 4 4 H 1.48501 * 109.47162 * 89.99162 * 3 2 1 5 5 H 1.48507 * 109.46522 * 329.99583 * 3 2 1 6 6 H 1.48498 * 109.47295 * 209.99828 * 3 2 1 7 7 C 1.38816 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99892 * 15.33538 * 7 2 1 9 9 N 1.36929 * 120.00238 * 195.33338 * 7 2 1 10 10 C 1.47221 * 135.96540 * 7.44042 * 9 7 2 11 11 C 1.52953 * 87.66793 * 153.64118 * 10 9 7 12 12 C 1.47229 * 135.96928 * 187.80548 * 9 7 2 13 13 C 1.53324 * 115.75903 * 270.15211 * 11 10 9 14 14 C 1.55023 * 103.78694 * 229.61704 * 13 11 10 15 15 C 1.55061 * 102.13348 * 20.86322 * 14 13 11 16 16 H 1.09003 * 110.58406 * 82.02710 * 15 14 13 17 17 C 1.52996 * 110.58676 * 204.93575 * 15 14 13 18 18 N 1.46497 * 109.47340 * 185.00022 * 17 15 14 19 19 C 1.34779 * 120.00149 * 180.02562 * 18 17 15 20 20 O 1.21574 * 119.99791 * 359.97438 * 19 18 17 21 21 C 1.47524 * 119.99774 * 179.97438 * 19 18 17 22 22 C 1.36782 * 126.92599 * 179.70995 * 21 19 18 23 23 C 1.41402 * 103.83796 * 179.87375 * 22 21 19 24 24 Cl 1.73604 * 126.72758 * 180.11363 * 23 22 21 25 25 N 1.30232 * 106.55051 * 0.39138 * 23 22 21 26 26 O 1.20880 * 111.95788 * 359.74642 * 25 23 22 27 27 O 1.42845 * 115.80241 * 141.75539 * 11 10 9 28 28 H 0.97000 * 120.00254 * 174.90663 * 1 2 3 29 29 H 1.08998 * 113.49938 * 268.31325 * 10 9 7 30 30 H 1.08996 * 113.50607 * 38.86072 * 10 9 7 31 31 H 1.09001 * 113.49687 * 321.14136 * 12 9 7 32 32 H 1.09001 * 113.49850 * 91.62044 * 12 9 7 33 33 H 1.09001 * 110.56200 * 348.19153 * 13 11 10 34 34 H 1.08995 * 110.55969 * 110.89238 * 13 11 10 35 35 H 1.09000 * 110.86783 * 139.02408 * 14 13 11 36 36 H 1.08999 * 110.87167 * 262.70355 * 14 13 11 37 37 H 1.08997 * 109.47029 * 304.99883 * 17 15 14 38 38 H 1.08999 * 109.47321 * 64.99803 * 17 15 14 39 39 H 0.97007 * 119.99737 * 359.97438 * 18 17 15 40 40 H 1.07998 * 128.08325 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4976 2.0464 1.4001 5 1 1.4477 2.6526 -0.7002 6 1 3.5478 1.4400 -0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4990 -2.1210 -0.2464 9 7 3.3429 -1.2232 0.3141 10 6 4.3271 -0.2512 0.8180 11 6 5.1034 -1.4334 1.4004 12 6 4.4206 -2.2260 0.2889 13 6 4.7260 -1.8390 2.8301 14 6 6.0901 -1.9274 3.5613 15 6 7.0019 -1.0593 2.6562 16 1 6.8792 -0.0019 2.8903 17 6 8.4655 -1.4788 2.8068 18 7 9.3162 -0.5689 2.0357 19 6 10.6521 -0.7464 2.0196 20 8 11.1513 -1.6614 2.6455 21 6 11.5086 0.1696 1.2426 22 6 12.8712 0.1249 1.1316 23 6 13.1771 1.2121 0.2809 24 17 14.7548 1.6984 -0.2560 25 7 12.0438 1.7809 -0.0163 26 8 11.1071 1.2216 0.5043 27 8 6.5267 -1.3428 1.3202 28 1 -0.4850 -0.8367 -0.0746 29 1 4.8634 0.2738 0.0276 30 1 3.9249 0.4220 1.5750 31 1 4.0970 -3.2196 0.5992 32 1 4.9815 -2.2378 -0.6456 33 1 4.0939 -1.0790 3.2894 34 1 4.2238 -2.8064 2.8335 35 1 6.0215 -1.5042 4.5635 36 1 6.4455 -2.9572 3.5970 37 1 8.7490 -1.4374 3.8585 38 1 8.5920 -2.4960 2.4362 39 1 8.9178 0.1609 1.5360 40 1 13.5538 -0.5778 1.5862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053691759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:19 Heat of formation + Delta-G solvation = 49.556215 kcal Electronic energy + Delta-G solvation = -26753.125057 eV Core-core repulsion = 22600.095687 eV Total energy + Delta-G solvation = -4153.029370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -45.71299 -40.46725 -39.86069 -37.66434 -37.08732 -35.12111 -34.20822 -32.77911 -32.35456 -32.04190 -29.67608 -27.33006 -25.49526 -25.04363 -24.17893 -23.37531 -21.68181 -21.38289 -21.24811 -19.35760 -19.11702 -18.49508 -17.49421 -16.94724 -16.85284 -16.33953 -15.87714 -15.69597 -15.39458 -14.79146 -14.54179 -14.31986 -14.20845 -13.77815 -13.38737 -13.29005 -13.17698 -13.16751 -12.95080 -12.45671 -12.02857 -11.69611 -11.62535 -11.52480 -11.34303 -11.08629 -10.79284 -10.72784 -10.63234 -10.52965 -10.37662 -10.34118 -9.89987 -9.57887 -9.32735 -8.97181 -8.74878 -7.24224 -6.35507 -3.27950 0.17424 0.88749 1.24284 1.98603 2.47582 2.70914 3.37184 3.46520 3.60162 3.62424 3.73540 4.12751 4.34202 4.42481 4.46694 4.55357 4.61462 4.80933 4.84229 4.88912 5.05201 5.08348 5.25445 5.33133 5.37124 5.46506 5.69153 5.76893 5.89341 6.13099 6.19106 6.21186 6.27408 6.29801 6.33757 6.51324 6.82572 7.04121 7.24606 7.29942 7.51344 8.19208 8.92380 9.45044 10.30876 11.14600 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.002335 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.864692 B =11986.191318 C =13254.178640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.022 4.022 3 Si 1.060 2.940 4 H -0.294 1.294 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.083 0.917 9 N -0.616 5.616 10 C 0.092 3.908 11 C 0.062 3.938 12 C 0.128 3.872 13 C -0.112 4.112 14 C -0.145 4.145 15 C 0.059 3.941 16 H 0.080 0.920 17 C 0.127 3.873 18 N -0.704 5.704 19 C 0.606 3.394 20 O -0.510 6.510 21 C -0.067 4.067 22 C -0.136 4.136 23 C 0.049 3.951 24 Cl 0.034 6.966 25 N -0.323 5.323 26 O 0.141 5.859 27 O -0.356 6.356 28 H 0.262 0.738 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.414 0.586 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.006 -0.167 7.020 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.222 4.222 3 Si 0.891 3.109 4 H -0.221 1.221 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.101 0.899 9 N -0.346 5.346 10 C -0.034 4.034 11 C 0.021 3.979 12 C 0.002 3.998 13 C -0.150 4.150 14 C -0.183 4.183 15 C 0.001 3.999 16 H 0.098 0.902 17 C 0.004 3.996 18 N -0.355 5.355 19 C 0.389 3.611 20 O -0.385 6.385 21 C -0.133 4.133 22 C -0.159 4.159 23 C -0.134 4.134 24 Cl 0.062 6.938 25 N -0.022 5.022 26 O 0.063 5.937 27 O -0.274 6.274 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.250 0.750 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 26.857 1.868 6.479 27.691 hybrid contribution 0.482 -1.679 -0.145 1.753 sum 27.340 0.189 6.334 28.064 Atomic orbital electron populations 1.70905 1.05386 1.29619 1.51222 1.25780 0.96477 1.00882 0.99040 0.83809 0.74707 0.75867 0.76477 1.22126 1.22166 1.20662 1.20089 0.80026 0.96050 1.46748 0.89903 1.45934 1.03637 1.07952 1.77037 1.23129 0.90018 0.93663 0.96632 1.23657 0.78956 0.99239 0.96057 1.22390 0.88349 0.94120 0.94945 1.22377 0.96357 1.03449 0.92816 1.23143 0.95303 1.00752 0.99119 1.23390 0.92282 0.99508 0.84719 0.90248 1.21617 0.87286 0.94265 0.96392 1.45860 1.05441 1.33477 1.50705 1.16371 0.81783 0.82704 0.80287 1.90902 1.73872 1.30652 1.43106 1.24228 0.94862 0.93613 1.00610 1.22741 0.94414 0.99119 0.99670 1.24088 0.90322 0.97083 1.01870 1.98436 1.15606 1.91035 1.88735 1.73906 0.95332 1.17807 1.15191 1.85098 1.29556 1.32640 1.46385 1.88776 1.20515 1.91617 1.26476 0.92789 0.93019 0.92902 0.93137 0.93900 0.90010 0.89909 0.89937 0.90142 0.89296 0.89622 0.75002 0.78769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.87 13.70 55.49 0.76 -28.11 16 2 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 3 Si 1.06 26.18 25.51 -169.99 -4.34 21.85 16 4 H -0.29 -6.87 6.97 56.52 0.39 -6.48 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.49 5.65 56.52 0.32 -6.17 16 7 C -0.30 -8.55 11.03 -15.06 -0.17 -8.72 16 8 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 9 N -0.62 -14.81 3.58 -184.60 -0.66 -15.47 16 10 C 0.09 1.89 5.12 -7.88 -0.04 1.85 16 11 C 0.06 1.03 1.66 -90.66 -0.15 0.88 16 12 C 0.13 2.52 8.20 -8.03 -0.07 2.46 16 13 C -0.11 -1.59 6.46 -25.49 -0.16 -1.75 16 14 C -0.14 -1.45 6.60 -24.57 -0.16 -1.61 16 15 C 0.06 0.61 3.38 -25.64 -0.09 0.53 16 16 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 17 C 0.13 1.12 5.41 -4.05 -0.02 1.10 16 18 N -0.70 -6.16 5.55 -61.36 -0.34 -6.50 16 19 C 0.61 5.90 7.82 -12.47 -0.10 5.80 16 20 O -0.51 -6.22 16.91 5.30 0.09 -6.13 16 21 C -0.07 -0.59 7.29 -36.32 -0.26 -0.86 16 22 C -0.14 -1.09 10.96 -38.91 -0.43 -1.51 16 23 C 0.05 0.44 7.97 -17.03 -0.14 0.30 16 24 Cl 0.03 0.25 29.33 -51.86 -1.52 -1.27 16 25 N -0.32 -3.36 12.05 32.82 0.40 -2.97 16 26 O 0.14 1.34 11.04 15.54 0.17 1.51 16 27 O -0.36 -5.11 11.02 -35.23 -0.39 -5.50 16 28 H 0.26 8.02 8.73 -40.82 -0.36 7.67 16 29 H 0.05 1.08 6.98 -51.93 -0.36 0.72 16 30 H 0.05 1.10 6.08 -51.93 -0.32 0.79 16 31 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.22 7.82 -51.93 -0.41 0.82 16 34 H 0.08 1.19 7.81 -51.93 -0.41 0.78 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.72 8.05 -51.93 -0.42 0.31 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.41 3.23 8.30 -40.82 -0.34 2.89 16 40 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -33.04 354.35 -7.23 -40.27 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.86 Total: -0.74 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.88 Total: -2.29 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.15 Total: -53.05 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.13 Total: -10.12 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -4.34 Total: 21.85 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.52 Total: -1.27 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.04 -7.23 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053691759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.826 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds