Wall clock time and date at job start Sat Apr 11 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99825 * 2 1 4 4 H 1.48501 * 109.47131 * 270.00094 * 3 2 1 5 5 H 1.48501 * 109.47545 * 30.00194 * 3 2 1 6 6 H 1.48502 * 109.47056 * 150.00519 * 3 2 1 7 7 C 1.38810 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99857 * 189.40867 * 7 2 1 9 9 N 1.36934 * 120.00368 * 9.41029 * 7 2 1 10 10 C 1.47182 * 121.22655 * 29.69948 * 9 7 2 11 11 C 1.53228 * 108.69451 * 129.08022 * 10 9 7 12 12 O 1.43062 * 109.45835 * 51.56670 * 11 10 9 13 13 C 1.42692 * 113.87977 * 298.36800 * 12 11 10 14 14 H 1.08993 * 108.93287 * 304.40173 * 13 12 11 15 15 C 1.52511 * 110.61541 * 185.33748 * 13 12 11 16 16 C 1.53161 * 109.79585 * 298.72549 * 15 13 12 17 17 N 1.46979 * 108.44695 * 305.48066 * 16 15 13 18 18 C 1.34775 * 120.72385 * 234.51312 * 17 16 15 19 19 O 1.21578 * 120.00304 * 184.67917 * 18 17 16 20 20 C 1.47519 * 119.99303 * 4.67188 * 18 17 16 21 21 C 1.36790 * 126.92520 * 173.75556 * 20 18 17 22 22 C 1.41405 * 103.83922 * 179.87585 * 21 20 18 23 23 Cl 1.73598 * 126.72652 * 180.13261 * 22 21 20 24 24 N 1.30223 * 106.54877 * 0.39366 * 22 21 20 25 25 O 1.20889 * 111.96086 * 359.74517 * 24 22 21 26 26 C 1.46803 * 118.55926 * 54.53212 * 17 16 15 27 27 C 1.47597 * 121.22714 * 209.73046 * 9 7 2 28 28 H 1.09002 * 110.31704 * 352.29294 * 27 9 7 29 29 H 0.97001 * 120.00092 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.60321 * 9.31679 * 10 9 7 31 31 H 1.08996 * 109.60179 * 248.84384 * 10 9 7 32 32 H 1.09000 * 109.47020 * 291.57039 * 11 10 9 33 33 H 1.08993 * 109.47141 * 171.56826 * 11 10 9 34 34 H 1.08997 * 109.42328 * 58.83066 * 15 13 12 35 35 H 1.09000 * 109.41797 * 178.63200 * 15 13 12 36 36 H 1.09000 * 109.63821 * 185.79402 * 16 15 13 37 37 H 1.09002 * 109.63870 * 65.16737 * 16 15 13 38 38 H 1.08005 * 128.07604 * 359.97438 * 21 20 18 39 39 H 1.08994 * 109.52118 * 185.79895 * 26 17 16 40 40 H 1.09005 * 109.56838 * 65.64462 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0794 -1.2085 0.1524 9 7 1.3394 -2.3800 -0.1950 10 6 0.1135 -2.4348 -1.0076 11 6 0.2611 -3.5533 -2.0444 12 8 0.6501 -4.7634 -1.3878 13 6 1.9082 -4.6794 -0.7198 14 1 2.6676 -4.3626 -1.4345 15 6 2.3110 -6.0398 -0.1603 16 6 1.2713 -6.5086 0.8621 17 7 1.1137 -5.4597 1.8796 18 6 1.2672 -5.7416 3.1886 19 8 1.0508 -4.8854 4.0242 20 6 1.6975 -7.0891 3.6073 21 6 2.0107 -7.4946 4.8755 22 6 2.3501 -8.8585 4.7204 23 17 2.8420 -9.9549 5.9732 24 7 2.2267 -9.1296 3.4527 25 8 1.8668 -8.1661 2.8173 26 6 0.7852 -4.0984 1.4391 27 6 1.8188 -3.6413 0.4032 28 1 2.7967 -3.4950 0.8618 29 1 -0.4850 0.8400 0.0004 30 1 -0.0310 -1.4816 -1.5162 31 1 -0.7421 -2.6423 -0.3651 32 1 1.0219 -3.2748 -2.7736 33 1 -0.6910 -3.7055 -2.5527 34 1 2.3710 -6.7629 -0.9736 35 1 3.2842 -5.9588 0.3238 36 1 1.6121 -7.4296 1.3351 37 1 0.3179 -6.6807 0.3625 38 1 1.9997 -6.9100 5.7836 39 1 0.8046 -3.4240 2.2952 40 1 -0.2084 -4.0895 0.9908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074384372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:30 Heat of formation + Delta-G solvation = 32.422155 kcal Electronic energy + Delta-G solvation = -28463.593458 eV Core-core repulsion = 24309.821099 eV Total energy + Delta-G solvation = -4153.772358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.47739 -40.24093 -38.70628 -37.47756 -36.06689 -34.71367 -34.03701 -32.66894 -31.73567 -31.48890 -29.56256 -27.58302 -25.75188 -24.24484 -23.78197 -23.42636 -22.76881 -21.56345 -20.79038 -18.72162 -18.24994 -17.85958 -17.01702 -16.87608 -16.08999 -15.58013 -15.37460 -15.19497 -15.09548 -14.56756 -14.25166 -14.14430 -13.92912 -13.74119 -13.17263 -13.08671 -12.80353 -12.67874 -12.46942 -12.34972 -12.03260 -11.42991 -11.42381 -11.09893 -10.98650 -10.86651 -10.67056 -10.40480 -10.37003 -10.27424 -10.20213 -10.08289 -10.01732 -9.69122 -9.04377 -8.71666 -8.45285 -6.79554 -5.91785 -3.41980 0.47766 1.08005 1.49413 2.26544 2.88239 3.05248 3.30706 3.37777 3.38859 3.87433 4.26108 4.28074 4.35760 4.44007 4.68439 4.97608 5.09725 5.23326 5.29126 5.36696 5.42644 5.57506 5.67360 5.77262 5.87194 5.99006 6.03203 6.12104 6.22032 6.28757 6.37491 6.44862 6.59762 6.78087 7.04597 7.31515 7.46444 7.56917 7.64560 7.83932 7.97516 8.26852 9.03099 9.62327 10.20539 11.14868 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.002993 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.016331 B = 9352.369684 C =10273.500928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.009 3.991 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.583 5.583 10 C 0.137 3.863 11 C 0.038 3.962 12 O -0.387 6.387 13 C 0.079 3.921 14 H 0.054 0.946 15 C -0.122 4.122 16 C 0.099 3.901 17 N -0.586 5.586 18 C 0.593 3.407 19 O -0.509 6.509 20 C -0.054 4.054 21 C -0.144 4.144 22 C 0.055 3.945 23 Cl 0.028 6.972 24 N -0.336 5.336 25 O 0.132 5.868 26 C 0.105 3.895 27 C 0.134 3.866 28 H 0.077 0.923 29 H 0.257 0.743 30 H 0.099 0.901 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.194 0.806 39 H 0.094 0.906 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 -16.824 4.013 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.305 5.305 10 C 0.011 3.989 11 C -0.039 4.039 12 O -0.306 6.306 13 C 0.020 3.980 14 H 0.072 0.928 15 C -0.161 4.161 16 C -0.024 4.024 17 N -0.317 5.317 18 C 0.377 3.623 19 O -0.385 6.385 20 C -0.120 4.120 21 C -0.167 4.167 22 C -0.128 4.128 23 Cl 0.056 6.944 24 N -0.040 5.040 25 O 0.060 5.940 26 C -0.017 4.017 27 C 0.025 3.975 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.211 0.789 39 H 0.112 0.888 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.228 -17.496 3.842 18.201 hybrid contribution 0.524 1.458 0.740 1.717 sum 3.751 -16.038 4.582 17.096 Atomic orbital electron populations 1.69944 1.05270 1.25867 1.53399 1.25189 0.95502 0.98533 0.99854 0.86191 0.79073 0.83172 0.77706 1.21318 1.21525 1.20299 1.19169 0.90711 0.83178 1.45596 0.91374 1.44271 1.28808 1.03003 1.54443 1.21525 0.88246 0.97440 0.91655 1.23358 0.98765 0.86176 0.95649 1.87718 1.37245 1.35487 1.70180 1.22238 0.86507 0.94480 0.94799 0.92785 1.21810 0.98621 0.97058 0.98591 1.22186 1.00941 0.89698 0.89561 1.48307 1.66745 1.12249 1.04443 1.16646 0.79089 0.83110 0.83461 1.90901 1.51193 1.45196 1.51196 1.24498 1.05694 0.91022 0.90757 1.22736 1.02079 0.92628 0.99254 1.24009 1.06438 0.92080 0.90267 1.98421 1.89335 1.61199 1.45424 1.73822 1.14621 1.10026 1.05546 1.85211 1.62191 1.13778 1.32797 1.22564 1.00639 0.78941 0.99596 1.21650 0.96728 0.87767 0.91377 0.90472 0.93304 0.88300 0.95247 0.94090 0.90083 0.89924 0.90322 0.88838 0.89519 0.78925 0.88807 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 10.95 55.49 0.61 -24.11 16 2 C 0.01 0.23 5.11 -17.43 -0.09 0.14 16 3 Si 0.91 20.88 29.56 -169.99 -5.03 15.86 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.26 -6.64 9.70 -15.06 -0.15 -6.78 16 8 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 9 N -0.58 -13.52 2.71 -163.86 -0.44 -13.96 16 10 C 0.14 3.02 4.88 -3.55 -0.02 3.01 16 11 C 0.04 0.69 6.98 37.28 0.26 0.95 16 12 O -0.39 -6.73 9.59 -35.23 -0.34 -7.07 16 13 C 0.08 1.30 2.72 -26.88 -0.07 1.23 16 14 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 15 C -0.12 -1.53 5.82 -26.90 -0.16 -1.69 16 16 C 0.10 1.24 6.17 -3.70 -0.02 1.21 16 17 N -0.59 -8.98 2.96 -174.01 -0.52 -9.50 16 18 C 0.59 9.17 7.69 -12.48 -0.10 9.08 16 19 O -0.51 -9.51 16.35 5.30 0.09 -9.42 16 20 C -0.05 -0.68 6.99 -36.32 -0.25 -0.94 16 21 C -0.14 -1.60 10.96 -38.90 -0.43 -2.02 16 22 C 0.06 0.61 7.97 -17.03 -0.14 0.48 16 23 Cl 0.03 0.26 29.33 -51.86 -1.52 -1.26 16 24 N -0.34 -4.04 12.05 32.82 0.40 -3.65 16 25 O 0.13 1.55 7.75 15.55 0.12 1.67 16 26 C 0.11 1.98 5.61 -3.72 -0.02 1.96 16 27 C 0.13 2.58 3.03 -67.07 -0.20 2.38 16 28 H 0.08 1.52 7.99 -51.93 -0.42 1.11 16 29 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.10 2.44 6.15 -51.93 -0.32 2.13 16 31 H 0.03 0.69 7.17 -51.93 -0.37 0.32 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.02 3.82 -54.71 -0.21 0.81 16 37 H 0.09 1.09 7.94 -51.93 -0.41 0.68 16 38 H 0.19 1.80 8.06 -52.48 -0.42 1.37 16 39 H 0.09 2.02 7.02 -51.93 -0.36 1.66 16 40 H 0.08 1.56 6.56 -51.93 -0.34 1.22 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -28.52 337.76 -7.44 -35.96 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.52 Total: 1.38 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -1.38 Total: 9.00 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.04 Total: -51.21 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.13 Total: -14.82 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.86 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.52 -7.44 -35.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074384372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.383 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds