Wall clock time and date at job start Sat Apr 11 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86792 * 119.99953 * 2 1 4 4 H 1.48500 * 109.47335 * 269.99731 * 3 2 1 5 5 H 1.48506 * 109.47227 * 29.99755 * 3 2 1 6 6 H 1.48500 * 109.47208 * 149.99727 * 3 2 1 7 7 C 1.38953 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99287 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00399 * 359.97438 * 7 2 1 10 10 C 1.34785 * 120.00013 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99727 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00052 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.46959 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99762 * 170.00433 * 13 12 10 15 15 C 1.53235 * 109.34154 * 187.25450 * 14 13 12 16 16 N 1.47086 * 108.51926 * 306.16949 * 15 14 13 17 17 C 1.34776 * 120.87971 * 231.18767 * 16 15 14 18 18 O 1.21723 * 119.99865 * 7.02562 * 17 16 15 19 19 C 1.46514 * 120.00132 * 187.03103 * 17 16 15 20 20 C 1.36618 * 125.97918 * 187.45019 * 19 17 16 21 21 C 1.40257 * 106.73476 * 180.18597 * 20 19 17 22 22 C 1.35366 * 107.11846 * 359.57731 * 21 20 19 23 23 Cl 1.73596 * 125.63038 * 180.23914 * 22 21 20 24 24 O 1.33946 * 108.73611 * 0.26194 * 22 21 20 25 25 C 1.47076 * 118.23761 * 51.45349 * 16 15 14 26 26 C 1.46895 * 110.99996 * 294.29980 * 13 12 10 27 27 H 0.96998 * 120.00560 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00514 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.46924 * 60.00088 * 12 10 9 30 30 H 1.09001 * 109.47283 * 300.00783 * 12 10 9 31 31 H 1.08993 * 109.50101 * 67.28822 * 14 13 12 32 32 H 1.09005 * 109.49217 * 307.20788 * 14 13 12 33 33 H 1.08998 * 109.63256 * 186.46009 * 15 14 13 34 34 H 1.09004 * 109.63013 * 65.87502 * 15 14 13 35 35 H 1.07996 * 126.63526 * 0.04531 * 20 19 17 36 36 H 1.08000 * 126.43482 * 179.83716 * 21 20 19 37 37 H 1.09000 * 109.63032 * 68.25927 * 25 16 15 38 38 H 1.09005 * 109.62808 * 188.83658 * 25 16 15 39 39 H 1.09001 * 109.49682 * 292.70552 * 26 13 12 40 40 H 1.08997 * 109.49449 * 52.78841 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 1.5140 -7.2572 0.2413 15 6 2.5565 -8.3668 0.4146 16 7 3.4544 -8.3503 -0.7502 17 6 3.7047 -9.4767 -1.4467 18 8 3.0894 -10.4966 -1.1960 19 6 4.7175 -9.4737 -2.5054 20 6 4.9697 -10.4943 -3.3778 21 6 6.0145 -10.0657 -4.2096 22 6 6.3452 -8.8122 -3.8201 23 17 7.5820 -7.8248 -4.5336 24 8 5.5610 -8.4598 -2.7930 25 6 4.0765 -7.0733 -1.1313 26 6 2.9695 -6.0134 -1.2472 27 1 -0.4851 0.8400 -0.0004 28 1 0.3534 -2.3907 0.0016 29 1 0.6168 -4.9210 -0.8876 30 1 0.6174 -4.9206 0.8924 31 1 0.8724 -7.4905 -0.6083 32 1 0.9088 -7.1825 1.1448 33 1 2.0560 -9.3330 0.4774 34 1 3.1322 -8.1897 1.3232 35 1 4.4641 -11.4478 -3.4176 36 1 6.4668 -10.6283 -5.0129 37 1 4.7955 -6.7742 -0.3685 38 1 4.5814 -7.1838 -2.0910 39 1 2.3077 -6.2640 -2.0762 40 1 3.4199 -5.0366 -1.4233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112611474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:36 Heat of formation + Delta-G solvation = -24.604056 kcal Electronic energy + Delta-G solvation = -27093.894564 eV Core-core repulsion = 22937.649363 eV Total energy + Delta-G solvation = -4156.245201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.20755 -40.15474 -38.69703 -37.43110 -37.34381 -34.74074 -33.86549 -33.54523 -31.45465 -31.29135 -30.07272 -28.74133 -25.92674 -24.31549 -23.86612 -22.99888 -22.35190 -21.10184 -19.91574 -19.26677 -18.05977 -17.87648 -17.30123 -17.00001 -16.41278 -15.94212 -15.25683 -15.11739 -14.91859 -14.61496 -14.36920 -14.10800 -13.92482 -13.82168 -13.68717 -13.55149 -13.43717 -12.99669 -12.57505 -12.37130 -12.00961 -11.83800 -11.63889 -11.55992 -11.30318 -11.17603 -11.14290 -10.87915 -10.52184 -10.41862 -10.39874 -10.24961 -9.51277 -9.13909 -8.86686 -8.43668 -8.02838 -7.93856 -6.45073 -3.85974 0.54701 0.69592 1.79451 2.49954 2.82462 3.01911 3.15299 3.24535 3.30157 3.84841 3.91034 4.19055 4.20796 4.34461 4.79869 4.93223 4.95992 4.99134 5.06830 5.19359 5.23050 5.28501 5.32469 5.38727 5.56225 5.64306 5.75579 5.76828 5.81958 5.84894 6.08903 6.11560 6.20024 6.23774 6.38185 7.00868 7.19531 7.25225 7.52063 7.74011 8.02511 8.57573 9.14438 9.50416 10.01560 10.72589 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.002646 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.481776 B =10578.865512 C =12416.034879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.578 6.578 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.040 3.960 15 C 0.119 3.881 16 N -0.600 5.600 17 C 0.602 3.398 18 O -0.524 6.524 19 C -0.055 4.055 20 C -0.113 4.113 21 C -0.186 4.186 22 C 0.044 3.956 23 Cl 0.036 6.964 24 O -0.146 6.146 25 C 0.106 3.894 26 C 0.041 3.959 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.037 0.963 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.028 0.972 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.456 -19.322 -6.988 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.240 5.240 14 C -0.089 4.089 15 C -0.003 4.003 16 N -0.332 5.332 17 C 0.389 3.611 18 O -0.403 6.403 19 C -0.107 4.107 20 C -0.134 4.134 21 C -0.206 4.206 22 C -0.034 4.034 23 Cl 0.064 6.936 24 O -0.044 6.044 25 C -0.016 4.016 26 C -0.088 4.088 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.187 0.813 36 H 0.185 0.815 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.046 0.954 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.238 -19.220 -6.340 21.851 hybrid contribution -0.629 0.948 -0.861 1.427 sum 7.609 -18.272 -7.201 21.062 Atomic orbital electron populations 1.69608 1.05964 1.28221 1.50463 1.25267 0.95625 0.99757 0.97264 0.85860 0.79269 0.80796 0.78384 1.20420 1.20919 1.19369 1.19694 0.93363 0.82165 1.47654 0.87863 1.41872 1.09219 1.04605 1.64198 1.19704 0.88398 0.84500 0.84595 1.90478 1.13638 1.86852 1.55314 1.21856 0.93854 0.91035 1.01730 1.61516 1.25350 1.01517 1.35591 1.22515 0.95320 0.89452 1.01638 1.21831 0.91492 0.99631 0.87324 1.48190 1.46433 1.08620 1.29908 1.16590 0.80873 0.83809 0.79813 1.90879 1.49809 1.32388 1.67208 1.22184 0.97534 0.88267 1.02749 1.21919 0.97442 1.00067 0.93957 1.21537 1.00808 0.93901 1.04328 1.23099 0.94478 0.93172 0.92661 1.98467 1.46406 1.70429 1.78260 1.84293 1.39126 1.39093 1.41857 1.22423 0.95880 0.81219 1.02073 1.22724 0.95145 1.01420 0.89480 0.91835 0.77480 0.93377 0.89075 0.94498 0.89154 0.88440 0.89953 0.81259 0.81508 0.89526 0.88275 0.95366 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.14 9.68 -14.94 -0.14 -8.28 16 8 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 9 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 10 C 0.44 10.00 7.44 -10.98 -0.08 9.92 16 11 O -0.58 -14.80 13.91 5.55 0.08 -14.72 16 12 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 13 N -0.51 -8.15 4.37 -235.48 -1.03 -9.17 16 14 C 0.04 0.49 5.62 -3.70 -0.02 0.47 16 15 C 0.12 1.42 6.61 -3.60 -0.02 1.40 16 16 N -0.60 -7.85 3.00 -173.78 -0.52 -8.37 16 17 C 0.60 8.08 7.65 -12.93 -0.10 7.98 16 18 O -0.52 -7.99 16.33 5.17 0.08 -7.90 16 19 C -0.06 -0.65 6.77 -36.83 -0.25 -0.90 16 20 C -0.11 -1.09 10.63 -39.41 -0.42 -1.51 16 21 C -0.19 -1.55 10.84 -39.85 -0.43 -1.98 16 22 C 0.04 0.43 7.93 29.71 0.24 0.67 16 23 Cl 0.04 0.31 29.30 -51.86 -1.52 -1.21 16 24 O -0.15 -1.69 7.27 4.74 0.03 -1.66 16 25 C 0.11 1.43 6.26 -3.37 -0.02 1.41 16 26 C 0.04 0.63 5.27 -3.47 -0.02 0.62 16 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.39 9.26 7.90 -40.82 -0.32 8.93 16 29 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.09 1.39 7.97 -51.93 -0.41 0.97 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.97 7.99 -51.93 -0.41 0.55 16 33 H 0.10 1.10 7.04 -51.93 -0.37 0.74 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.10 1.27 4.37 -52.58 -0.23 1.04 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.12 2.20 5.76 -51.93 -0.30 1.90 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -31.18 352.36 -7.83 -39.02 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -4.51 Total: 9.30 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -1.40 Total: 11.05 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.88 Total: -54.87 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.20 Total: -24.28 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.52 Total: -1.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.18 -7.83 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112611474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.411 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds