Wall clock time and date at job start Sat Apr 11 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86792 * 119.99953 * 2 1 4 4 H 1.48500 * 109.47335 * 269.99731 * 3 2 1 5 5 H 1.48506 * 109.47227 * 29.99755 * 3 2 1 6 6 H 1.48500 * 109.47208 * 149.99727 * 3 2 1 7 7 C 1.38953 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99287 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00399 * 359.97438 * 7 2 1 10 10 C 1.34785 * 120.00013 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99727 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00052 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.46959 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99762 * 170.00433 * 13 12 10 15 15 C 1.53235 * 109.34154 * 187.25450 * 14 13 12 16 16 N 1.47086 * 108.51926 * 306.16949 * 15 14 13 17 17 C 1.34776 * 120.87971 * 231.18767 * 16 15 14 18 18 O 1.21723 * 119.99865 * 7.02562 * 17 16 15 19 19 C 1.46514 * 120.00132 * 187.03103 * 17 16 15 20 20 C 1.36618 * 125.97918 * 187.45019 * 19 17 16 21 21 C 1.40257 * 106.73476 * 180.18597 * 20 19 17 22 22 C 1.35366 * 107.11846 * 359.57731 * 21 20 19 23 23 Cl 1.73596 * 125.63038 * 180.23914 * 22 21 20 24 24 O 1.33946 * 108.73611 * 0.26194 * 22 21 20 25 25 C 1.47076 * 118.23761 * 51.45349 * 16 15 14 26 26 C 1.46895 * 110.99996 * 294.29980 * 13 12 10 27 27 H 0.96998 * 120.00560 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00514 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.46924 * 60.00088 * 12 10 9 30 30 H 1.09001 * 109.47283 * 300.00783 * 12 10 9 31 31 H 1.08993 * 109.50101 * 67.28822 * 14 13 12 32 32 H 1.09005 * 109.49217 * 307.20788 * 14 13 12 33 33 H 1.08998 * 109.63256 * 186.46009 * 15 14 13 34 34 H 1.09004 * 109.63013 * 65.87502 * 15 14 13 35 35 H 1.07996 * 126.63526 * 0.04531 * 20 19 17 36 36 H 1.08000 * 126.43482 * 179.83716 * 21 20 19 37 37 H 1.09000 * 109.63032 * 68.25927 * 25 16 15 38 38 H 1.09005 * 109.62808 * 188.83658 * 25 16 15 39 39 H 1.09001 * 109.49682 * 292.70552 * 26 13 12 40 40 H 1.08997 * 109.49449 * 52.78841 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 1.5140 -7.2572 0.2413 15 6 2.5565 -8.3668 0.4146 16 7 3.4544 -8.3503 -0.7502 17 6 3.7047 -9.4767 -1.4467 18 8 3.0894 -10.4966 -1.1960 19 6 4.7175 -9.4737 -2.5054 20 6 4.9697 -10.4943 -3.3778 21 6 6.0145 -10.0657 -4.2096 22 6 6.3452 -8.8122 -3.8201 23 17 7.5820 -7.8248 -4.5336 24 8 5.5610 -8.4598 -2.7930 25 6 4.0765 -7.0733 -1.1313 26 6 2.9695 -6.0134 -1.2472 27 1 -0.4851 0.8400 -0.0004 28 1 0.3534 -2.3907 0.0016 29 1 0.6168 -4.9210 -0.8876 30 1 0.6174 -4.9206 0.8924 31 1 0.8724 -7.4905 -0.6083 32 1 0.9088 -7.1825 1.1448 33 1 2.0560 -9.3330 0.4774 34 1 3.1322 -8.1897 1.3232 35 1 4.4641 -11.4478 -3.4176 36 1 6.4668 -10.6283 -5.0129 37 1 4.7955 -6.7742 -0.3685 38 1 4.5814 -7.1838 -2.0910 39 1 2.3077 -6.2640 -2.0762 40 1 3.4199 -5.0366 -1.4233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112611474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:36 Heat of formation + Delta-G solvation = -46.483360 kcal Electronic energy + Delta-G solvation = -27094.843322 eV Core-core repulsion = 22937.649363 eV Total energy + Delta-G solvation = -4157.193958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.00525 -41.25030 -40.24548 -38.72655 -38.13693 -36.13743 -35.56407 -34.36863 -33.26348 -32.48995 -31.05378 -29.97059 -27.46179 -25.77953 -25.03419 -24.06109 -23.11847 -22.08178 -21.11135 -20.79755 -19.87355 -18.95260 -18.22903 -17.86305 -17.82150 -17.23709 -16.63145 -16.44254 -16.23504 -16.12599 -15.53069 -15.40655 -15.35656 -15.20428 -14.63701 -14.44834 -14.31669 -14.18017 -13.86588 -13.50811 -13.27403 -13.22414 -12.98955 -12.81684 -12.57125 -12.41739 -12.35614 -12.25750 -12.19597 -12.09971 -11.49532 -11.42139 -11.24117 -10.37884 -10.03908 -9.96951 -9.67575 -9.26746 -8.45386 -5.93494 -0.30165 -0.04083 1.05632 1.38426 1.42575 1.54845 1.57385 1.88151 2.06381 2.12282 2.29322 2.72226 3.21829 3.28647 3.36779 3.64155 3.78498 3.93289 4.08318 4.10715 4.21079 4.24469 4.31154 4.42094 4.47851 4.55217 4.58795 4.67761 4.71193 4.81891 4.87496 4.99926 5.08190 5.22900 5.42503 5.47646 5.78065 6.01588 6.05849 6.14484 6.61932 6.73184 7.14618 7.58359 8.13623 8.72080 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.002646 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.481776 B =10578.865512 C =12416.034879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.329 4.329 8 H 0.080 0.920 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.611 6.611 12 C 0.058 3.942 13 N -0.530 5.530 14 C 0.044 3.956 15 C 0.119 3.881 16 N -0.602 5.602 17 C 0.603 3.397 18 O -0.546 6.546 19 C -0.085 4.085 20 C -0.100 4.100 21 C -0.172 4.172 22 C 0.034 3.966 23 Cl 0.044 6.956 24 O -0.162 6.162 25 C 0.118 3.882 26 C 0.046 3.954 27 H 0.277 0.723 28 H 0.396 0.604 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.041 0.959 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.186 0.814 36 H 0.200 0.800 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.033 0.967 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.376 -20.485 -7.583 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.098 0.902 9 N -0.212 5.212 10 C 0.230 3.770 11 O -0.497 6.497 12 C -0.073 4.073 13 N -0.255 5.255 14 C -0.084 4.084 15 C -0.003 4.003 16 N -0.333 5.333 17 C 0.392 3.608 18 O -0.427 6.427 19 C -0.137 4.137 20 C -0.121 4.121 21 C -0.192 4.192 22 C -0.044 4.044 23 Cl 0.072 6.928 24 O -0.061 6.061 25 C -0.004 4.004 26 C -0.083 4.083 27 H 0.086 0.914 28 H 0.229 0.771 29 H 0.083 0.917 30 H 0.134 0.866 31 H 0.059 0.941 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.203 0.797 36 H 0.217 0.783 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.051 0.949 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.144 -20.400 -6.935 23.034 hybrid contribution -0.530 1.226 -0.724 1.519 sum 7.614 -19.174 -7.659 22.006 Atomic orbital electron populations 1.69669 1.06834 1.29223 1.50567 1.26009 0.96496 1.02362 0.96433 0.84957 0.77939 0.77048 0.78591 1.19713 1.19716 1.19720 1.19648 0.92699 0.83931 1.49628 0.90184 1.41937 1.09314 1.04710 1.65235 1.20708 0.88317 0.85806 0.82197 1.90462 1.15515 1.87690 1.56072 1.21737 0.93504 0.88315 1.03702 1.61487 1.25772 1.02654 1.35636 1.22592 0.95412 0.87558 1.02839 1.21913 0.91385 0.99882 0.87112 1.48223 1.46570 1.08306 1.30225 1.16737 0.80860 0.83377 0.79857 1.90855 1.50869 1.32901 1.68086 1.22040 0.98481 0.89367 1.03788 1.22250 0.97014 0.99944 0.92852 1.21916 0.99773 0.93201 1.04287 1.23449 0.94562 0.93981 0.92410 1.98471 1.45949 1.70387 1.77950 1.84210 1.39637 1.39480 1.42737 1.22211 0.94914 0.81017 1.02259 1.22555 0.95667 1.00217 0.89856 0.91379 0.77073 0.91659 0.86553 0.94054 0.86867 0.87498 0.89607 0.79666 0.78319 0.90539 0.87550 0.94868 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.33 -18.35 9.68 84.04 0.81 -17.53 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -28.75 5.29 -306.97 -1.62 -30.37 16 10 C 0.44 20.25 7.44 87.66 0.65 20.90 16 11 O -0.61 -32.23 13.91 -3.07 -0.04 -32.28 16 12 C 0.06 1.92 5.45 85.56 0.47 2.39 16 13 N -0.53 -16.30 4.37 -898.91 -3.93 -20.23 16 14 C 0.04 1.00 5.62 86.38 0.49 1.49 16 15 C 0.12 2.67 6.61 86.35 0.57 3.24 16 16 N -0.60 -15.36 3.00 -821.91 -2.47 -17.83 16 17 C 0.60 15.74 7.65 86.40 0.66 16.41 16 18 O -0.55 -16.14 16.33 -4.42 -0.07 -16.21 16 19 C -0.09 -1.94 6.77 24.05 0.16 -1.78 16 20 C -0.10 -1.74 10.63 22.38 0.24 -1.50 16 21 C -0.17 -2.44 10.84 22.10 0.24 -2.20 16 22 C 0.03 0.61 7.93 67.16 0.53 1.15 16 23 Cl 0.04 0.70 29.30 -2.72 -0.08 0.62 16 24 O -0.16 -3.66 7.27 -5.96 -0.04 -3.70 16 25 C 0.12 3.22 6.26 86.50 0.54 3.77 16 26 C 0.05 1.44 5.27 86.54 0.46 1.89 16 27 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 28 H 0.40 18.86 7.90 -92.71 -0.73 18.12 16 29 H 0.07 1.96 8.13 -2.38 -0.02 1.94 16 30 H 0.12 3.28 7.97 -2.39 -0.02 3.26 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 2.09 7.99 -2.38 -0.02 2.07 16 33 H 0.11 2.24 7.04 -2.39 -0.02 2.23 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.11 2.76 4.37 -12.69 -0.06 2.71 16 39 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 3.24 5.76 -2.39 -0.01 3.22 16 Total: -1.00 -67.94 352.36 0.67 -67.27 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.33 Total: 29.24 kcal Atomic # 6 Polarization: 21.69 SS G_CDS: 6.29 Total: 27.98 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -7.74 Total: -117.43 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -0.16 Total: -52.19 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 17 Polarization: 0.70 SS G_CDS: -0.08 Total: 0.62 kcal Total: -67.94 0.67 -67.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112611474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.784 kcal (2) G-P(sol) polarization free energy of solvation -67.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds