Wall clock time and date at job start Sat Apr 11 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86805 * 119.99985 * 2 1 4 4 H 1.48496 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46979 * 300.00275 * 3 2 1 6 6 H 1.48496 * 109.46708 * 60.00223 * 3 2 1 7 7 C 1.38954 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00216 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99636 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99418 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00669 * 359.97438 * 10 9 7 12 12 C 1.50710 * 119.99642 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.46858 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00142 * 169.99722 * 13 12 10 15 15 C 1.53230 * 109.34529 * 187.25505 * 14 13 12 16 16 N 1.47089 * 108.51848 * 306.16993 * 15 14 13 17 17 C 1.34775 * 120.87902 * 231.18269 * 16 15 14 18 18 O 1.21637 * 119.99600 * 184.21869 * 17 16 15 19 19 C 1.47213 * 120.00060 * 4.22733 * 17 16 15 20 20 C 1.47084 * 127.20346 * 313.36774 * 19 17 16 21 21 C 1.34115 * 105.97129 * 180.26492 * 20 19 17 22 22 O 1.34293 * 109.18359 * 0.02562 * 21 20 19 23 23 C 1.33687 * 110.90801 * 359.97438 * 22 21 20 24 24 Cl 1.73598 * 125.82515 * 180.02562 * 23 22 21 25 25 C 1.47080 * 118.23586 * 51.45857 * 16 15 14 26 26 C 1.46902 * 111.00386 * 294.29852 * 13 12 10 27 27 H 0.97000 * 120.00016 * 359.97438 * 1 2 3 28 28 H 0.96991 * 120.00758 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47256 * 59.99898 * 12 10 9 30 30 H 1.09001 * 109.46976 * 299.99906 * 12 10 9 31 31 H 1.09000 * 109.49028 * 67.28887 * 14 13 12 32 32 H 1.09006 * 109.49318 * 307.21782 * 14 13 12 33 33 H 1.08999 * 109.63158 * 186.46142 * 15 14 13 34 34 H 1.08999 * 109.62976 * 65.87823 * 15 14 13 35 35 H 1.08000 * 127.01288 * 0.23546 * 20 19 17 36 36 H 1.07999 * 125.41038 * 179.97438 * 21 20 19 37 37 H 1.09001 * 109.62886 * 68.25276 * 25 16 15 38 38 H 1.08993 * 109.62415 * 188.82996 * 25 16 15 39 39 H 1.08999 * 109.49094 * 292.70974 * 26 13 12 40 40 H 1.08998 * 109.48588 * 52.78833 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0890 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 7 2.1985 -5.9794 -0.0016 14 6 1.5141 -7.2574 0.2360 15 6 2.5566 -8.3671 0.4084 16 7 3.4544 -8.3497 -0.7566 17 6 3.7047 -9.4755 -1.4539 18 8 4.5085 -9.4594 -2.3667 19 6 3.0053 -10.7246 -1.1109 20 6 2.8127 -11.2966 0.2304 21 6 2.1285 -12.4360 0.0510 22 8 1.8915 -12.6067 -1.2598 23 6 2.4046 -11.5988 -1.9726 24 17 2.3218 -11.4292 -3.6983 25 6 4.0766 -7.0722 -1.1365 26 6 2.9695 -6.0123 -1.2516 27 1 -0.4850 0.8400 0.0004 28 1 0.3535 -2.3907 -0.0005 29 1 0.6175 -4.9205 -0.8913 30 1 0.6168 -4.9209 0.8886 31 1 0.8724 -7.4899 -0.6139 32 1 0.9088 -7.1834 1.1396 33 1 2.0560 -9.3334 0.4704 34 1 3.1323 -8.1908 1.3170 35 1 3.1532 -10.8835 1.1684 36 1 1.8182 -13.1099 0.8358 37 1 4.7956 -6.7739 -0.3735 38 1 4.5813 -7.1820 -2.0963 39 1 2.3076 -6.2622 -2.0807 40 1 3.4199 -5.0353 -1.4268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112801313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:39 Heat of formation + Delta-G solvation = -27.784734 kcal Electronic energy + Delta-G solvation = -27041.602838 eV Core-core repulsion = 22885.219713 eV Total energy + Delta-G solvation = -4156.383125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.06525 -40.11072 -38.62836 -37.43741 -37.20509 -34.62631 -33.82414 -33.40979 -31.29323 -31.00424 -30.07924 -28.83730 -25.94052 -24.42702 -23.91239 -23.12150 -22.06600 -20.92256 -19.60260 -19.22128 -18.10801 -17.87969 -17.14770 -16.73531 -16.21014 -16.01289 -15.34542 -15.20463 -15.06137 -14.81548 -14.56160 -14.06059 -13.92262 -13.81587 -13.67658 -13.52776 -13.24569 -12.78090 -12.54286 -12.40040 -12.03347 -11.66625 -11.61571 -11.55052 -11.39482 -11.16822 -11.01898 -10.89010 -10.36057 -10.34284 -10.24449 -9.98821 -9.50619 -9.12092 -8.87632 -8.39837 -8.01038 -7.91560 -6.43963 -3.84695 0.68514 0.87285 1.59081 2.61108 2.87267 3.02579 3.15027 3.26018 3.33048 3.86130 3.91140 4.13708 4.21497 4.33878 4.75785 4.81565 4.87614 4.95401 5.05201 5.17731 5.18651 5.23557 5.30831 5.43742 5.60218 5.64945 5.69712 5.77198 5.81186 5.88091 6.10754 6.20801 6.22990 6.30834 6.49764 7.10221 7.28454 7.31437 7.53579 7.99420 8.04254 8.59005 9.15975 9.51901 10.03126 10.73798 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.025741 B = 0.002185 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.517911 B =12808.795019 C =12999.364471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.514 5.514 14 C 0.039 3.961 15 C 0.107 3.893 16 N -0.600 5.600 17 C 0.585 3.415 18 O -0.529 6.529 19 C -0.196 4.196 20 C -0.183 4.183 21 C -0.015 4.015 22 O -0.169 6.169 23 C 0.084 3.916 24 Cl 0.051 6.949 25 C 0.122 3.878 26 C 0.040 3.960 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.035 0.965 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.170 0.830 36 H 0.219 0.781 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.028 0.972 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.080 -24.906 0.740 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.229 3.771 11 O -0.462 6.462 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.090 4.090 15 C -0.016 4.016 16 N -0.333 5.333 17 C 0.373 3.627 18 O -0.406 6.406 19 C -0.201 4.201 20 C -0.203 4.203 21 C -0.081 4.081 22 O -0.066 6.066 23 C 0.005 3.995 24 Cl 0.080 6.920 25 C 0.000 4.000 26 C -0.088 4.088 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.187 0.813 36 H 0.236 0.764 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.046 0.954 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.215 -24.856 0.351 24.859 hybrid contribution -0.992 0.834 -0.552 1.409 sum -0.777 -24.022 -0.200 24.035 Atomic orbital electron populations 1.69617 1.05958 1.28081 1.50655 1.25266 0.95628 0.99752 0.97319 0.85806 0.79738 0.81141 0.77706 1.19187 1.20780 1.20746 1.19748 0.93390 0.82151 1.47447 0.87809 1.41878 1.09205 1.04620 1.64303 1.19710 0.88405 0.84503 0.84527 1.90485 1.13639 1.86847 1.55186 1.21854 0.93881 0.91131 1.01610 1.61522 1.25167 1.01306 1.35911 1.22500 0.95311 0.89808 1.01370 1.22104 0.91780 0.99286 0.88474 1.48085 1.46686 1.08484 1.30089 1.17126 0.81645 0.82073 0.81881 1.90829 1.34434 1.84913 1.30416 1.21102 1.07396 0.98722 0.92909 1.22907 1.03780 0.96684 0.96886 1.24019 1.02572 0.99942 0.81547 1.83734 1.62391 1.41562 1.18916 1.22515 1.00816 0.89017 0.87119 1.98486 1.96901 1.95743 1.00908 1.21903 0.95467 0.80333 1.02281 1.22750 0.95314 1.01584 0.89191 0.91914 0.77506 0.93442 0.89186 0.94697 0.89435 0.88923 0.90112 0.81294 0.76433 0.90012 0.88795 0.95416 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 8 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 10 C 0.44 10.05 7.44 -10.98 -0.08 9.97 16 11 O -0.58 -14.89 13.91 5.55 0.08 -14.82 16 12 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 13 N -0.51 -8.06 4.37 -235.47 -1.03 -9.09 16 14 C 0.04 0.46 5.62 -3.70 -0.02 0.44 16 15 C 0.11 1.09 6.02 -3.60 -0.02 1.07 16 16 N -0.60 -7.79 3.00 -173.53 -0.52 -8.31 16 17 C 0.59 8.11 7.45 -12.62 -0.09 8.02 16 18 O -0.53 -8.97 16.40 5.24 0.09 -8.88 16 19 C -0.20 -2.18 5.33 -103.24 -0.55 -2.73 16 20 C -0.18 -1.33 8.75 -37.45 -0.33 -1.66 16 21 C -0.01 -0.08 12.03 29.28 0.35 0.27 16 22 O -0.17 -1.48 10.53 7.36 0.08 -1.41 16 23 C 0.08 0.91 7.99 30.16 0.24 1.15 16 24 Cl 0.05 0.55 28.96 -51.86 -1.50 -0.95 16 25 C 0.12 1.77 6.62 -3.37 -0.02 1.75 16 26 C 0.04 0.64 5.27 -3.46 -0.02 0.62 16 27 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 29 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 30 H 0.09 1.35 7.97 -51.93 -0.41 0.94 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.86 7.99 -51.93 -0.41 0.44 16 33 H 0.09 0.74 4.55 -51.93 -0.24 0.51 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.17 0.85 7.59 -52.49 -0.40 0.45 16 36 H 0.22 0.25 8.06 -52.49 -0.42 -0.17 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.40 7.08 -51.93 -0.37 1.03 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.12 2.25 5.76 -51.93 -0.30 1.95 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -33.29 352.59 -7.17 -40.46 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -4.50 Total: 7.49 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -0.81 Total: 11.86 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.88 Total: -54.86 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: 0.24 Total: -25.11 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -1.50 Total: -0.95 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.29 -7.17 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112801313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.674 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds