Wall clock time and date at job start Sat Apr 11 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86805 * 119.99985 * 2 1 4 4 H 1.48496 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46979 * 300.00275 * 3 2 1 6 6 H 1.48496 * 109.46708 * 60.00223 * 3 2 1 7 7 C 1.38954 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00216 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99636 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99418 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00669 * 359.97438 * 10 9 7 12 12 C 1.50710 * 119.99642 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.46858 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00142 * 169.99722 * 13 12 10 15 15 C 1.53230 * 109.34529 * 187.25505 * 14 13 12 16 16 N 1.47089 * 108.51848 * 306.16993 * 15 14 13 17 17 C 1.34775 * 120.87902 * 231.18269 * 16 15 14 18 18 O 1.21637 * 119.99600 * 184.21869 * 17 16 15 19 19 C 1.47213 * 120.00060 * 4.22733 * 17 16 15 20 20 C 1.47084 * 127.20346 * 313.36774 * 19 17 16 21 21 C 1.34115 * 105.97129 * 180.26492 * 20 19 17 22 22 O 1.34293 * 109.18359 * 0.02562 * 21 20 19 23 23 C 1.33687 * 110.90801 * 359.97438 * 22 21 20 24 24 Cl 1.73598 * 125.82515 * 180.02562 * 23 22 21 25 25 C 1.47080 * 118.23586 * 51.45857 * 16 15 14 26 26 C 1.46902 * 111.00386 * 294.29852 * 13 12 10 27 27 H 0.97000 * 120.00016 * 359.97438 * 1 2 3 28 28 H 0.96991 * 120.00758 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47256 * 59.99898 * 12 10 9 30 30 H 1.09001 * 109.46976 * 299.99906 * 12 10 9 31 31 H 1.09000 * 109.49028 * 67.28887 * 14 13 12 32 32 H 1.09006 * 109.49318 * 307.21782 * 14 13 12 33 33 H 1.08999 * 109.63158 * 186.46142 * 15 14 13 34 34 H 1.08999 * 109.62976 * 65.87823 * 15 14 13 35 35 H 1.08000 * 127.01288 * 0.23546 * 20 19 17 36 36 H 1.07999 * 125.41038 * 179.97438 * 21 20 19 37 37 H 1.09001 * 109.62886 * 68.25276 * 25 16 15 38 38 H 1.08993 * 109.62415 * 188.82996 * 25 16 15 39 39 H 1.08999 * 109.49094 * 292.70974 * 26 13 12 40 40 H 1.08998 * 109.48588 * 52.78833 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0890 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 7 2.1985 -5.9794 -0.0016 14 6 1.5141 -7.2574 0.2360 15 6 2.5566 -8.3671 0.4084 16 7 3.4544 -8.3497 -0.7566 17 6 3.7047 -9.4755 -1.4539 18 8 4.5085 -9.4594 -2.3667 19 6 3.0053 -10.7246 -1.1109 20 6 2.8127 -11.2966 0.2304 21 6 2.1285 -12.4360 0.0510 22 8 1.8915 -12.6067 -1.2598 23 6 2.4046 -11.5988 -1.9726 24 17 2.3218 -11.4292 -3.6983 25 6 4.0766 -7.0722 -1.1365 26 6 2.9695 -6.0123 -1.2516 27 1 -0.4850 0.8400 0.0004 28 1 0.3535 -2.3907 -0.0005 29 1 0.6175 -4.9205 -0.8913 30 1 0.6168 -4.9209 0.8886 31 1 0.8724 -7.4899 -0.6139 32 1 0.9088 -7.1834 1.1396 33 1 2.0560 -9.3334 0.4704 34 1 3.1323 -8.1908 1.3170 35 1 3.1532 -10.8835 1.1684 36 1 1.8182 -13.1099 0.8358 37 1 4.7956 -6.7739 -0.3735 38 1 4.5813 -7.1820 -2.0963 39 1 2.3076 -6.2622 -2.0807 40 1 3.4199 -5.0353 -1.4268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112801313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:38 Heat of formation + Delta-G solvation = -52.704017 kcal Electronic energy + Delta-G solvation = -27042.683419 eV Core-core repulsion = 22885.219713 eV Total energy + Delta-G solvation = -4157.463706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.70741 -41.22274 -40.20874 -38.63944 -38.15195 -36.09490 -35.46926 -34.20254 -33.25314 -32.05932 -30.77269 -30.10258 -27.47689 -25.85041 -25.10376 -24.12315 -22.71420 -21.92717 -21.03670 -20.40032 -19.86217 -18.98300 -18.01970 -17.74233 -17.43747 -17.14050 -16.60967 -16.46992 -16.28319 -16.08481 -15.83296 -15.41090 -15.34272 -15.28702 -14.78025 -14.41810 -14.09996 -14.03495 -13.69334 -13.50945 -13.32948 -13.18624 -12.96716 -12.78450 -12.46238 -12.40891 -12.37621 -12.27605 -12.17581 -12.08710 -11.45953 -11.28461 -10.81161 -10.33730 -9.99224 -9.86318 -9.70017 -9.23447 -8.45415 -5.93288 -0.03080 0.11282 1.03694 1.36962 1.42510 1.56199 1.62794 1.91572 2.07637 2.29079 2.42864 2.73435 3.21852 3.33615 3.37577 3.71134 3.86245 3.96424 4.08089 4.13461 4.23377 4.27620 4.36799 4.43540 4.50630 4.56802 4.58936 4.73045 4.74290 4.81945 4.88640 5.03570 5.20927 5.35353 5.43004 5.71743 5.80695 6.03065 6.14224 6.29519 6.62514 6.95224 7.15227 7.59050 8.14693 8.72255 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.025741 B = 0.002185 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.517911 B =12808.795019 C =12999.364471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.990 3.010 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.328 4.328 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.612 6.612 12 C 0.059 3.941 13 N -0.528 5.528 14 C 0.038 3.962 15 C 0.107 3.893 16 N -0.599 5.599 17 C 0.582 3.418 18 O -0.571 6.571 19 C -0.213 4.213 20 C -0.191 4.191 21 C 0.012 3.988 22 O -0.172 6.172 23 C 0.067 3.933 24 Cl 0.036 6.964 25 C 0.130 3.870 26 C 0.049 3.951 27 H 0.277 0.723 28 H 0.396 0.604 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.038 0.962 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.195 0.805 36 H 0.270 0.730 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.028 0.972 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 -26.780 2.758 27.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.458 4.458 8 H 0.097 0.903 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.498 6.498 12 C -0.072 4.072 13 N -0.253 5.253 14 C -0.089 4.089 15 C -0.015 4.015 16 N -0.331 5.331 17 C 0.372 3.628 18 O -0.451 6.451 19 C -0.219 4.219 20 C -0.210 4.210 21 C -0.054 4.054 22 O -0.069 6.069 23 C -0.011 4.011 24 Cl 0.065 6.935 25 C 0.008 3.992 26 C -0.080 4.080 27 H 0.086 0.914 28 H 0.230 0.770 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.056 0.944 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.109 0.891 35 H 0.212 0.788 36 H 0.285 0.715 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.046 0.954 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.305 -26.753 2.393 26.892 hybrid contribution -0.523 1.308 -1.130 1.806 sum -1.828 -25.445 1.263 25.542 Atomic orbital electron populations 1.69672 1.06778 1.29132 1.50687 1.25998 0.96510 1.02316 0.96491 0.84908 0.78072 0.77348 0.78253 1.19840 1.19826 1.19589 1.19670 0.92644 0.83973 1.49496 0.90322 1.41943 1.09312 1.04713 1.65318 1.20771 0.88326 0.85894 0.82094 1.90469 1.15626 1.87716 1.56019 1.21740 0.93498 0.88319 1.03661 1.61498 1.25656 1.02830 1.35302 1.22676 0.95730 0.87767 1.02766 1.22350 0.91279 1.00303 0.87535 1.48138 1.46738 1.07514 1.30754 1.17560 0.81176 0.83005 0.81099 1.90801 1.36408 1.85691 1.32242 1.21062 1.07844 0.97753 0.95249 1.23181 1.04645 0.97246 0.95939 1.25057 0.99915 0.99567 0.80838 1.83772 1.62122 1.40768 1.20258 1.22488 1.02009 0.89851 0.86788 1.98474 1.97003 1.95887 1.02176 1.21623 0.94877 0.81099 1.01639 1.22505 0.95672 0.99992 0.89834 0.91385 0.77047 0.91936 0.86244 0.94414 0.86537 0.85937 0.89065 0.78825 0.71487 0.90638 0.89893 0.95413 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.34 13.05 21.66 0.28 -49.05 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 3 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.33 -18.40 9.68 84.04 0.81 -17.58 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.58 -28.88 5.29 -306.96 -1.62 -30.51 16 10 C 0.44 20.31 7.44 87.66 0.65 20.96 16 11 O -0.61 -32.68 13.91 -3.07 -0.04 -32.72 16 12 C 0.06 1.91 5.45 85.56 0.47 2.38 16 13 N -0.53 -15.86 4.37 -898.88 -3.93 -19.78 16 14 C 0.04 0.78 5.62 86.38 0.49 1.26 16 15 C 0.11 1.88 6.02 86.34 0.52 2.40 16 16 N -0.60 -15.02 3.00 -821.16 -2.47 -17.49 16 17 C 0.58 15.91 7.45 86.60 0.65 16.55 16 18 O -0.57 -19.97 16.40 -4.15 -0.07 -20.04 16 19 C -0.21 -4.37 5.33 -18.97 -0.10 -4.47 16 20 C -0.19 -2.02 8.75 23.65 0.21 -1.82 16 21 C 0.01 0.08 12.03 66.88 0.80 0.88 16 22 O -0.17 -2.53 10.53 3.41 0.04 -2.50 16 23 C 0.07 1.37 7.99 67.45 0.54 1.90 16 24 Cl 0.04 0.78 28.96 -2.72 -0.08 0.70 16 25 C 0.13 3.90 6.62 86.50 0.57 4.47 16 26 C 0.05 1.60 5.27 86.54 0.46 2.06 16 27 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.40 18.86 7.90 -92.72 -0.73 18.13 16 29 H 0.06 1.88 8.12 -2.39 -0.02 1.86 16 30 H 0.12 3.23 7.97 -2.39 -0.02 3.21 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.12 1.74 7.99 -2.38 -0.02 1.72 16 33 H 0.12 1.46 4.55 -2.39 -0.01 1.45 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.19 1.00 7.59 -2.91 -0.02 0.98 16 36 H 0.27 -1.14 8.06 -2.91 -0.02 -1.17 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.08 2.64 7.08 -2.39 -0.02 2.62 16 39 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 3.22 5.76 -2.39 -0.01 3.20 16 Total: -1.00 -76.07 352.59 1.04 -75.03 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.37 Total: 22.76 kcal Atomic # 6 Polarization: 22.22 SS G_CDS: 6.53 Total: 28.74 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -7.73 Total: -116.83 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -0.07 Total: -55.26 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 17 Polarization: 0.78 SS G_CDS: -0.08 Total: 0.70 kcal Total: -76.07 1.04 -75.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112801313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.326 kcal (2) G-P(sol) polarization free energy of solvation -76.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds