Wall clock time and date at job start Sat Apr 11 2020 06:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 120.00106 * 2 1 4 4 C 1.52998 * 109.47333 * 94.99859 * 3 2 1 5 5 C 1.50696 * 119.99748 * 179.97438 * 2 1 3 6 6 N 1.46500 * 109.47217 * 95.00166 * 5 2 1 7 7 C 1.34775 * 120.00602 * 179.97438 * 6 5 2 8 8 O 1.21578 * 119.99311 * 359.97438 * 7 6 5 9 9 C 1.47684 * 120.00351 * 179.97438 * 7 6 5 10 10 C 1.39664 * 120.16788 * 359.97438 * 9 7 6 11 11 C 1.37853 * 119.88067 * 179.97438 * 10 9 7 12 12 S 1.76196 * 119.89327 * 179.97438 * 11 10 9 13 13 O 1.42103 * 106.39862 * 336.46326 * 12 11 10 14 14 O 1.42095 * 106.40437 * 203.54157 * 12 11 10 15 15 C 1.76199 * 107.21610 * 89.99910 * 12 11 10 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99836 * 179.72181 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28505 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27572 * 17 15 12 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.38466 * 120.21750 * 0.25584 * 11 10 9 24 24 C 1.38206 * 120.33825 * 359.48759 * 23 11 10 25 25 C 1.38326 * 120.11617 * 0.51074 * 24 23 11 26 26 F 1.35100 * 120.10815 * 179.72774 * 25 24 23 27 27 H 1.07999 * 119.99623 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.00058 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46905 * 214.99926 * 3 2 1 30 30 H 1.09000 * 109.46891 * 334.99668 * 3 2 1 31 31 H 1.09000 * 109.47288 * 60.00053 * 4 3 2 32 32 H 1.09003 * 109.47046 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47182 * 299.99423 * 4 3 2 34 34 H 1.09004 * 109.47322 * 335.00278 * 5 2 1 35 35 H 1.09005 * 109.47323 * 214.99757 * 5 2 1 36 36 H 0.97005 * 119.99915 * 0.02562 * 6 5 2 37 37 H 1.07998 * 120.05677 * 0.02562 * 10 9 7 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.07998 * 119.82911 * 179.72102 * 23 11 10 40 40 H 1.08003 * 119.94364 * 180.25973 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.4275 1.6839 1.4370 5 6 2.0635 -1.3051 0.0006 6 7 2.4119 -1.6684 -1.3752 7 6 3.0935 -2.8051 -1.6201 8 8 3.4195 -3.5287 -0.6991 9 6 3.4442 -3.1716 -3.0071 10 6 3.0709 -2.3432 -4.0677 11 6 3.4019 -2.6908 -5.3600 12 16 2.9306 -1.6462 -6.6984 13 8 1.8158 -0.8909 -6.2445 14 8 2.8922 -2.4696 -7.8558 15 6 4.2418 -0.4962 -6.9492 16 1 5.1214 -0.5353 -6.3238 17 6 4.1475 0.4497 -7.9480 18 7 3.0765 0.4971 -8.7097 19 14 5.5409 1.6639 -8.2188 20 1 6.5105 1.0962 -9.1898 21 1 4.9921 2.9359 -8.7536 22 1 6.2280 1.9250 -6.9285 23 6 4.0984 -3.8610 -5.6103 24 6 4.4769 -4.6848 -4.5671 25 6 4.1521 -4.3495 -3.2650 26 9 4.5174 -5.1577 -2.2458 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 2.9743 1.1988 -0.5895 30 1 1.4387 2.0854 -0.4344 31 1 3.0524 0.9036 1.8713 32 1 2.9729 2.6277 1.4369 33 1 1.5168 1.7903 2.0264 34 1 1.4385 -2.0853 0.4352 35 1 2.9743 -1.1986 0.5900 36 1 2.1528 -1.0905 -2.1099 37 1 2.5248 -1.4315 -3.8757 38 1 3.0101 1.1628 -9.4122 39 1 4.3505 -4.1295 -6.6255 40 1 5.0237 -5.5940 -4.7692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123898409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:47 Heat of formation + Delta-G solvation = -133.683849 kcal Electronic energy + Delta-G solvation = -27084.798031 eV Core-core repulsion = 22905.946521 eV Total energy + Delta-G solvation = -4178.851511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.90219 -40.08299 -38.32707 -37.02433 -35.45133 -34.16146 -34.02334 -33.23800 -31.60013 -30.61929 -30.48133 -26.69167 -26.28974 -23.93111 -23.72641 -22.84221 -20.80775 -19.45785 -18.76055 -18.01897 -17.36708 -16.81310 -16.55959 -16.07770 -15.88171 -15.59398 -15.41397 -15.10912 -14.88270 -14.49833 -14.41931 -14.09340 -13.92949 -13.52077 -13.24416 -13.09641 -13.03182 -12.85519 -12.54364 -12.33449 -12.09441 -12.00351 -11.55562 -11.35722 -11.30211 -11.10719 -10.98824 -10.69108 -10.47406 -10.38170 -10.24060 -9.86117 -9.41212 -9.37599 -9.31160 -9.12722 -9.04456 -8.82259 -6.85439 -5.49896 0.63299 0.98236 1.78244 1.90088 2.72275 2.99371 3.06927 3.12815 3.22332 3.57828 3.96287 4.09873 4.43463 4.48267 4.54781 4.56143 4.68013 5.00656 5.04365 5.16273 5.16742 5.26233 5.27995 5.38781 5.47201 5.52453 5.61606 5.65591 5.71067 5.74416 5.79209 5.88428 5.99593 6.05627 6.10402 6.26203 6.32125 6.55514 6.70661 6.72551 7.16794 7.37165 7.79260 8.10684 8.72619 10.09343 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009031 B = 0.004110 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.537106 B = 6811.317413 C = 8746.419193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.147 4.147 3 C -0.093 4.093 4 C -0.146 4.146 5 C 0.158 3.842 6 N -0.723 5.723 7 C 0.565 3.435 8 O -0.532 6.532 9 C -0.204 4.204 10 C 0.035 3.965 11 C -0.664 4.664 12 S 2.603 3.397 13 O -0.980 6.980 14 O -0.978 6.978 15 C -1.002 5.002 16 H 0.106 0.894 17 C 0.133 3.867 18 N -0.840 5.840 19 Si 0.924 3.076 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.261 1.261 23 C 0.029 3.971 24 C -0.188 4.188 25 C 0.192 3.808 26 F -0.114 7.114 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.406 0.594 37 H 0.150 0.850 38 H 0.293 0.707 39 H 0.157 0.843 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 -0.680 13.229 13.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.130 4.130 4 C -0.203 4.203 5 C 0.035 3.965 6 N -0.376 5.376 7 C 0.353 3.647 8 O -0.409 6.409 9 C -0.208 4.208 10 C 0.016 3.984 11 C -0.743 4.743 12 S 2.783 3.217 13 O -0.977 6.977 14 O -0.975 6.975 15 C -1.136 5.136 16 H 0.125 0.875 17 C -0.086 4.086 18 N -0.469 5.469 19 Si 0.747 3.253 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.185 1.185 23 C 0.011 3.989 24 C -0.207 4.207 25 C 0.171 3.829 26 F -0.092 7.092 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.243 0.757 37 H 0.168 0.832 38 H 0.104 0.896 39 H 0.175 0.825 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.009 -1.298 13.448 13.548 hybrid contribution 1.272 0.678 0.136 1.448 sum 0.262 -0.619 13.584 13.600 Atomic orbital electron populations 1.23919 0.95105 1.02477 0.98185 1.21792 0.95469 0.95169 1.02307 1.20642 1.00469 0.94043 0.97858 1.21726 1.01462 1.01301 0.95844 1.20285 0.99442 0.93576 0.83170 1.45955 1.57901 1.24116 1.09632 1.17947 0.77812 0.81035 0.87903 1.90812 1.53736 1.51054 1.45318 1.20018 1.08289 0.98182 0.94359 1.21007 0.90694 0.96593 0.90100 1.31812 1.12541 1.13276 1.16698 1.01251 0.75827 0.73523 0.71100 1.93349 1.52589 1.70140 1.81602 1.93354 1.88151 1.70616 1.45422 1.30077 1.22944 1.32574 1.27964 0.87538 1.24765 0.96360 0.95638 0.91788 1.69889 1.26572 1.33495 1.16926 0.86100 0.80603 0.78976 0.79604 1.18989 1.19807 1.18515 1.21125 0.87978 0.89699 1.00129 1.21268 1.05754 1.03184 0.90522 1.17831 0.92921 0.87310 0.84797 1.91585 1.88470 1.70912 1.58261 0.87744 0.88057 0.90841 0.90844 0.92594 0.92418 0.92674 0.90823 0.90724 0.75737 0.83211 0.89599 0.82499 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 13.88 29.01 0.40 -0.97 16 2 C -0.15 -1.39 4.67 -101.07 -0.47 -1.86 16 3 C -0.09 -0.82 6.10 -27.88 -0.17 -0.99 16 4 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 5 C 0.16 1.77 5.83 -5.20 -0.03 1.74 16 6 N -0.72 -9.47 5.50 -62.48 -0.34 -9.81 16 7 C 0.57 9.12 7.77 -12.40 -0.10 9.02 16 8 O -0.53 -9.90 15.34 5.30 0.08 -9.82 16 9 C -0.20 -3.37 5.88 -104.91 -0.62 -3.98 16 10 C 0.04 0.60 9.01 -39.19 -0.35 0.25 16 11 C -0.66 -12.59 5.81 -39.64 -0.23 -12.82 16 12 S 2.60 62.73 4.65 -107.50 -0.50 62.23 16 13 O -0.98 -25.53 17.15 -57.17 -0.98 -26.51 16 14 O -0.98 -25.85 17.14 -57.17 -0.98 -26.83 16 15 C -1.00 -25.18 9.58 30.60 0.29 -24.89 16 16 H 0.11 2.43 7.81 -52.49 -0.41 2.02 16 17 C 0.13 3.43 5.46 -17.82 -0.10 3.33 16 18 N -0.84 -22.87 13.19 55.43 0.73 -22.14 16 19 Si 0.92 19.10 29.54 -169.99 -5.02 14.08 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 C 0.03 0.49 9.51 -39.51 -0.38 0.11 16 24 C -0.19 -2.73 10.01 -39.56 -0.40 -3.12 16 25 C 0.19 3.11 7.29 -38.96 -0.28 2.83 16 26 F -0.11 -1.91 15.55 2.25 0.04 -1.88 16 27 H 0.10 0.78 7.99 -52.49 -0.42 0.36 16 28 H 0.10 0.84 7.99 -52.49 -0.42 0.42 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.61 7.99 -51.93 -0.41 0.20 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.83 7.99 -51.93 -0.41 0.42 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.41 4.89 6.50 -40.82 -0.27 4.62 16 37 H 0.15 2.32 5.95 -52.49 -0.31 2.01 16 38 H 0.29 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.16 2.37 7.60 -52.49 -0.40 1.97 16 40 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -33.06 366.98 -8.23 -41.29 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.73 Total: 5.99 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: -2.06 Total: -32.12 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.39 Total: -31.95 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -1.88 Total: -63.17 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 62.73 SS G_CDS: -0.50 Total: 62.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.06 -8.23 -41.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123898409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.395 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds