Wall clock time and date at job start Sat Apr 11 2020 06:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 120.00106 * 2 1 4 4 C 1.52998 * 109.47333 * 94.99859 * 3 2 1 5 5 C 1.50696 * 119.99748 * 179.97438 * 2 1 3 6 6 N 1.46500 * 109.47217 * 95.00166 * 5 2 1 7 7 C 1.34775 * 120.00602 * 179.97438 * 6 5 2 8 8 O 1.21578 * 119.99311 * 359.97438 * 7 6 5 9 9 C 1.47684 * 120.00351 * 179.97438 * 7 6 5 10 10 C 1.39664 * 120.16788 * 359.97438 * 9 7 6 11 11 C 1.37853 * 119.88067 * 179.97438 * 10 9 7 12 12 S 1.76196 * 119.89327 * 179.97438 * 11 10 9 13 13 O 1.42103 * 106.39862 * 336.46326 * 12 11 10 14 14 O 1.42095 * 106.40437 * 203.54157 * 12 11 10 15 15 C 1.76199 * 107.21610 * 89.99910 * 12 11 10 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99836 * 179.72181 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28505 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27572 * 17 15 12 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.38466 * 120.21750 * 0.25584 * 11 10 9 24 24 C 1.38206 * 120.33825 * 359.48759 * 23 11 10 25 25 C 1.38326 * 120.11617 * 0.51074 * 24 23 11 26 26 F 1.35100 * 120.10815 * 179.72774 * 25 24 23 27 27 H 1.07999 * 119.99623 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.00058 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46905 * 214.99926 * 3 2 1 30 30 H 1.09000 * 109.46891 * 334.99668 * 3 2 1 31 31 H 1.09000 * 109.47288 * 60.00053 * 4 3 2 32 32 H 1.09003 * 109.47046 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47182 * 299.99423 * 4 3 2 34 34 H 1.09004 * 109.47322 * 335.00278 * 5 2 1 35 35 H 1.09005 * 109.47323 * 214.99757 * 5 2 1 36 36 H 0.97005 * 119.99915 * 0.02562 * 6 5 2 37 37 H 1.07998 * 120.05677 * 0.02562 * 10 9 7 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.07998 * 119.82911 * 179.72102 * 23 11 10 40 40 H 1.08003 * 119.94364 * 180.25973 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.4275 1.6839 1.4370 5 6 2.0635 -1.3051 0.0006 6 7 2.4119 -1.6684 -1.3752 7 6 3.0935 -2.8051 -1.6201 8 8 3.4195 -3.5287 -0.6991 9 6 3.4442 -3.1716 -3.0071 10 6 3.0709 -2.3432 -4.0677 11 6 3.4019 -2.6908 -5.3600 12 16 2.9306 -1.6462 -6.6984 13 8 1.8158 -0.8909 -6.2445 14 8 2.8922 -2.4696 -7.8558 15 6 4.2418 -0.4962 -6.9492 16 1 5.1214 -0.5353 -6.3238 17 6 4.1475 0.4497 -7.9480 18 7 3.0765 0.4971 -8.7097 19 14 5.5409 1.6639 -8.2188 20 1 6.5105 1.0962 -9.1898 21 1 4.9921 2.9359 -8.7536 22 1 6.2280 1.9250 -6.9285 23 6 4.0984 -3.8610 -5.6103 24 6 4.4769 -4.6848 -4.5671 25 6 4.1521 -4.3495 -3.2650 26 9 4.5174 -5.1577 -2.2458 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 2.9743 1.1988 -0.5895 30 1 1.4387 2.0854 -0.4344 31 1 3.0524 0.9036 1.8713 32 1 2.9729 2.6277 1.4369 33 1 1.5168 1.7903 2.0264 34 1 1.4385 -2.0853 0.4352 35 1 2.9743 -1.1986 0.5900 36 1 2.1528 -1.0905 -2.1099 37 1 2.5248 -1.4315 -3.8757 38 1 3.0101 1.1628 -9.4122 39 1 4.3505 -4.1295 -6.6255 40 1 5.0237 -5.5940 -4.7692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123898409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:45 Heat of formation + Delta-G solvation = -156.596289 kcal Electronic energy + Delta-G solvation = -27085.791589 eV Core-core repulsion = 22905.946521 eV Total energy + Delta-G solvation = -4179.845068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -50.20907 -41.33476 -39.59866 -37.93391 -37.41642 -36.13247 -35.16755 -35.08989 -32.79774 -31.99421 -31.25602 -28.24602 -27.68012 -25.14253 -24.44645 -24.20059 -22.06753 -20.87606 -20.25597 -19.13806 -18.90324 -18.32533 -18.00359 -17.54779 -17.12698 -16.83200 -16.73420 -16.45366 -15.96988 -15.83845 -15.78224 -15.56232 -15.38508 -14.62892 -14.48672 -14.32739 -14.04761 -13.99330 -13.84632 -13.61714 -13.27426 -13.21589 -12.97992 -12.89053 -12.77530 -12.47229 -12.36734 -12.26755 -11.79770 -11.77330 -11.67012 -11.29432 -11.22086 -10.89706 -10.56381 -10.34488 -10.19837 -10.18174 -8.75223 -7.48829 -0.71291 -0.34415 0.08452 1.00391 1.38963 1.39585 1.43727 1.55594 2.13947 2.21377 2.29303 2.60086 2.80596 3.26119 3.36675 3.43971 3.68876 3.74420 3.76601 3.82873 3.98699 4.12063 4.31540 4.45191 4.47631 4.50507 4.55724 4.62893 4.65924 4.75403 4.77574 4.94368 5.00393 5.09379 5.14496 5.17706 5.28352 5.36854 5.43814 5.60654 5.81864 5.89430 6.23456 6.78775 6.90125 8.22018 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009031 B = 0.004110 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.537106 B = 6811.317413 C = 8746.419193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C -0.093 4.093 4 C -0.144 4.144 5 C 0.157 3.843 6 N -0.712 5.712 7 C 0.564 3.436 8 O -0.560 6.560 9 C -0.206 4.206 10 C 0.035 3.965 11 C -0.671 4.671 12 S 2.602 3.398 13 O -1.013 7.013 14 O -1.014 7.014 15 C -1.021 5.021 16 H 0.124 0.876 17 C 0.076 3.924 18 N -0.887 5.887 19 Si 0.987 3.013 20 H -0.254 1.254 21 H -0.263 1.263 22 H -0.248 1.248 23 C 0.026 3.974 24 C -0.165 4.165 25 C 0.188 3.812 26 F -0.116 7.116 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.411 0.589 37 H 0.159 0.841 38 H 0.301 0.699 39 H 0.170 0.830 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 -0.488 14.223 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 C -0.130 4.130 4 C -0.201 4.201 5 C 0.035 3.965 6 N -0.364 5.364 7 C 0.351 3.649 8 O -0.440 6.440 9 C -0.211 4.211 10 C 0.016 3.984 11 C -0.757 4.757 12 S 2.789 3.211 13 O -1.010 7.010 14 O -1.011 7.011 15 C -1.154 5.154 16 H 0.142 0.858 17 C -0.138 4.138 18 N -0.517 5.517 19 Si 0.805 3.195 20 H -0.179 1.179 21 H -0.187 1.187 22 H -0.172 1.172 23 C 0.007 3.993 24 C -0.184 4.184 25 C 0.168 3.832 26 F -0.094 7.094 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.249 0.751 37 H 0.176 0.824 38 H 0.111 0.889 39 H 0.187 0.813 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.140 -1.055 14.402 14.441 hybrid contribution 0.862 0.523 -0.062 1.010 sum 1.002 -0.533 14.339 14.384 Atomic orbital electron populations 1.24106 0.94848 1.03370 0.96450 1.21717 0.95695 0.94535 1.03772 1.20655 1.00078 0.93870 0.98446 1.21712 1.01777 1.01419 0.95183 1.20391 0.99617 0.94578 0.81925 1.46001 1.56477 1.23089 1.10785 1.17950 0.77981 0.81522 0.87413 1.90796 1.55238 1.52148 1.45868 1.20097 1.08303 0.98365 0.94347 1.21043 0.90709 0.97132 0.89556 1.31015 1.15380 1.13974 1.15355 1.00649 0.75492 0.73479 0.71528 1.93296 1.54074 1.71382 1.82279 1.93302 1.88560 1.71137 1.48093 1.30476 1.23769 1.32904 1.28298 0.85823 1.25932 0.98920 0.97621 0.91313 1.69976 1.28832 1.34900 1.18025 0.85164 0.77344 0.76717 0.80264 1.17858 1.18719 1.17155 1.21341 0.87466 0.89028 1.01467 1.21563 1.04283 1.03699 0.88872 1.18076 0.92638 0.87097 0.85411 1.91587 1.88409 1.70854 1.58509 0.86276 0.87779 0.91809 0.90222 0.93036 0.91799 0.92014 0.90838 0.90940 0.75140 0.82377 0.88913 0.81304 0.79279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 13.88 67.77 0.94 -1.40 16 2 C -0.16 -2.78 4.67 -16.50 -0.08 -2.86 16 3 C -0.09 -1.54 6.10 29.85 0.18 -1.36 16 4 C -0.14 -2.04 9.89 71.98 0.71 -1.32 16 5 C 0.16 3.40 5.83 85.63 0.50 3.90 16 6 N -0.71 -18.16 5.50 -469.85 -2.58 -20.74 16 7 C 0.56 17.76 7.77 86.74 0.67 18.43 16 8 O -0.56 -20.51 15.34 -3.96 -0.06 -20.57 16 9 C -0.21 -6.58 5.88 -20.05 -0.12 -6.70 16 10 C 0.03 1.18 9.01 22.52 0.20 1.38 16 11 C -0.67 -25.17 5.81 22.23 0.13 -25.04 16 12 S 2.60 127.71 4.65 -56.49 -0.26 127.45 16 13 O -1.01 -54.37 17.15 -128.00 -2.20 -56.56 16 14 O -1.01 -54.93 17.14 -128.00 -2.19 -57.12 16 15 C -1.02 -51.45 9.58 67.74 0.65 -50.80 16 16 H 0.12 5.56 7.81 -2.91 -0.02 5.54 16 17 C 0.08 3.90 5.46 84.66 0.46 4.37 16 18 N -0.89 -49.19 13.19 21.45 0.28 -48.90 16 19 Si 0.99 38.17 29.54 68.60 2.03 40.20 16 20 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 21 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 22 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 23 C 0.03 0.81 9.51 22.32 0.21 1.02 16 24 C -0.17 -4.31 10.01 22.28 0.22 -4.09 16 25 C 0.19 5.71 7.29 22.68 0.17 5.87 16 26 F -0.12 -3.64 15.55 44.97 0.70 -2.94 16 27 H 0.12 1.53 7.99 -2.91 -0.02 1.50 16 28 H 0.10 1.57 7.99 -2.91 -0.02 1.55 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.21 7.99 -2.39 -0.02 1.19 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.61 7.99 -2.38 -0.02 1.59 16 35 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.41 9.65 6.50 -92.70 -0.60 9.05 16 37 H 0.16 4.91 5.95 -2.91 -0.02 4.89 16 38 H 0.30 14.95 8.31 -92.70 -0.77 14.18 16 39 H 0.17 4.86 7.60 -2.91 -0.02 4.83 16 40 H 0.19 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -71.97 366.98 1.05 -70.92 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.48 Total: 26.86 kcal Atomic # 6 Polarization: -63.45 SS G_CDS: 4.86 Total: -58.59 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -2.30 Total: -69.64 kcal Atomic # 8 Polarization: -129.80 SS G_CDS: -4.45 Total: -134.25 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.70 Total: -2.94 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 16 Polarization: 127.71 SS G_CDS: -0.26 Total: 127.45 kcal Total: -71.97 1.05 -70.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123898409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.674 kcal (2) G-P(sol) polarization free energy of solvation -71.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds