Wall clock time and date at job start Sat Apr 11 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99737 * 2 1 4 4 H 1.48495 * 109.47092 * 269.99768 * 3 2 1 5 5 H 1.48497 * 109.47163 * 30.00310 * 3 2 1 6 6 H 1.48505 * 109.46546 * 150.00265 * 3 2 1 7 7 C 1.37877 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46806 * 179.97438 * 9 7 2 11 11 O 1.21302 * 120.00114 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99966 * 179.97438 * 10 9 7 13 13 C 1.40051 * 120.00162 * 174.47382 * 12 10 9 14 14 C 1.38473 * 120.10324 * 335.15968 * 13 12 10 15 15 C 1.38616 * 120.60150 * 179.72385 * 14 13 12 16 16 C 1.37817 * 120.36320 * 0.57625 * 15 14 13 17 17 C 1.39435 * 119.70787 * 359.70378 * 16 15 14 18 18 C 1.47662 * 121.33200 * 180.02562 * 17 16 15 19 19 O 1.21971 * 121.33103 * 0.02562 * 18 17 16 20 20 C 1.41497 * 117.34018 * 179.97438 * 18 17 16 21 21 C 1.35959 * 119.51890 * 0.02562 * 20 18 17 22 22 C 1.47809 * 118.73448 * 179.97438 * 21 20 18 23 23 N 1.34242 * 126.70431 * 359.68371 * 22 21 20 24 24 N 1.28988 * 107.24746 * 179.83416 * 23 22 21 25 25 N 1.28715 * 109.00422 * 0.43429 * 24 23 22 26 26 H 0.96996 * 125.31457 * 179.74198 * 25 24 23 27 27 N 1.28874 * 109.37760 * 359.72683 * 25 24 23 28 28 O 1.34145 * 122.53860 * 359.96908 * 21 20 18 29 29 C 1.34948 * 122.32921 * 0.04583 * 28 21 20 30 30 H 0.96998 * 119.99585 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47047 * 59.99760 * 9 7 2 32 32 H 1.08993 * 109.46797 * 299.99408 * 9 7 2 33 33 H 0.97000 * 119.99668 * 354.47487 * 12 10 9 34 34 H 1.08003 * 119.70077 * 0.02562 * 14 13 12 35 35 H 1.08000 * 119.81764 * 180.27642 * 15 14 13 36 36 H 1.08003 * 120.14707 * 179.68022 * 16 15 14 37 37 H 1.07998 * 120.24025 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4229 -3.4229 0.0001 12 7 1.7810 -4.9153 0.0011 13 6 2.6858 -5.9780 -0.1157 14 6 3.9125 -5.7817 -0.7274 15 6 4.8180 -6.8247 -0.8435 16 6 4.5039 -8.0769 -0.3611 17 6 3.2703 -8.2917 0.2523 18 6 2.8969 -9.6184 0.7823 19 8 3.6555 -10.5700 0.7015 20 6 1.6244 -9.7413 1.3887 21 6 0.8084 -8.6561 1.4594 22 6 -0.5174 -8.8042 2.0959 23 7 -1.0320 -9.9248 2.6265 24 7 -2.2033 -9.6306 3.0796 25 7 -2.4422 -8.3872 2.8477 26 1 -3.2573 -7.9188 3.0867 27 7 -1.4294 -7.8616 2.2487 28 8 1.1600 -7.4561 0.9738 29 6 2.3513 -7.2395 0.3781 30 1 -0.4849 0.8401 0.0004 31 1 0.6247 -2.5571 -0.8896 32 1 0.6241 -2.5567 0.8903 33 1 0.8311 -5.0938 0.0823 34 1 4.1680 -4.8058 -1.1132 35 1 5.7730 -6.6564 -1.3189 36 1 5.2100 -8.8884 -0.4580 37 1 1.3036 -10.6902 1.7924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:58 Heat of formation + Delta-G solvation = 82.194682 kcal Electronic energy + Delta-G solvation = -28022.765123 eV Core-core repulsion = 23770.043570 eV Total energy + Delta-G solvation = -4252.721554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.05470 -42.11763 -39.75967 -38.90225 -37.65756 -35.22314 -34.52778 -34.13030 -33.10550 -32.35160 -30.97156 -30.19622 -28.49818 -26.31428 -25.36252 -24.32100 -24.05727 -22.95663 -21.93605 -20.47384 -19.82918 -19.24498 -18.49329 -18.02155 -17.80047 -16.64256 -16.60230 -16.38532 -15.98341 -15.27335 -15.16563 -14.89482 -14.64558 -14.54352 -14.50718 -14.25710 -14.05183 -13.13130 -12.97390 -12.88524 -12.81511 -12.27712 -12.13603 -11.96829 -11.82117 -11.66308 -11.62872 -11.41410 -10.90546 -10.78552 -10.38498 -10.08849 -10.05360 -9.59330 -9.43495 -9.02311 -8.74918 -8.55681 -7.86685 -6.18514 -4.19401 -0.15259 0.57032 0.66077 1.15846 1.39563 1.81872 1.86139 2.76436 3.09025 3.26910 3.29386 3.30776 3.33745 3.42162 3.75116 3.78253 3.92288 4.27368 4.38134 4.46068 4.72851 4.77921 4.97022 5.06829 5.20196 5.22273 5.25696 5.44249 5.64056 5.81606 5.90808 5.96831 6.11298 6.32577 6.46027 6.68535 6.94859 7.05821 7.12098 7.37036 7.52372 7.66900 7.84305 8.13826 8.77522 8.91130 9.46359 10.93587 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.003208 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.556092 B = 8726.611008 C =11204.159135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.077 0.923 9 C 0.008 3.992 10 C 0.517 3.483 11 O -0.519 6.519 12 N -0.681 5.681 13 C 0.161 3.839 14 C -0.081 4.081 15 C -0.116 4.116 16 C -0.064 4.064 17 C -0.201 4.201 18 C 0.428 3.572 19 O -0.462 6.462 20 C -0.263 4.263 21 C 0.242 3.758 22 C 0.203 3.797 23 N -0.239 5.239 24 N -0.038 5.038 25 N -0.215 5.215 26 H 0.482 0.518 27 N -0.249 5.249 28 O -0.210 6.210 29 C 0.104 3.896 30 H 0.263 0.737 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.414 0.586 34 H 0.168 0.832 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 -18.222 2.518 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.095 0.905 9 C -0.031 4.031 10 C 0.309 3.691 11 O -0.393 6.393 12 N -0.325 5.325 13 C 0.064 3.936 14 C -0.102 4.102 15 C -0.135 4.135 16 C -0.083 4.083 17 C -0.204 4.204 18 C 0.313 3.687 19 O -0.344 6.344 20 C -0.287 4.287 21 C 0.190 3.810 22 C -0.077 4.077 23 N -0.114 5.114 24 N -0.033 5.033 25 N -0.063 5.063 26 H 0.338 0.662 27 N -0.102 5.102 28 O -0.113 6.113 29 C 0.057 3.943 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.250 0.750 34 H 0.185 0.815 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.296 -18.411 2.780 18.910 hybrid contribution -0.486 1.291 0.094 1.382 sum -3.782 -17.121 2.874 17.767 Atomic orbital electron populations 1.69952 1.06079 1.27152 1.50598 1.25000 0.94927 0.99578 0.94926 0.86400 0.79852 0.82441 0.78258 1.20511 1.21214 1.19586 1.21114 0.94272 0.88837 1.50958 0.90490 1.19296 0.93962 0.89845 1.00041 1.22434 0.91569 0.82651 0.72452 1.90509 1.17779 1.84003 1.47023 1.44159 1.10058 1.04948 1.73384 1.17231 0.93199 0.84588 0.98590 1.21720 0.91162 1.01728 0.95547 1.21191 1.00151 0.91832 1.00332 1.20998 0.94328 0.97737 0.95217 1.20489 0.97088 0.94883 1.07914 1.18304 0.86225 0.87002 0.77142 1.90742 1.52850 1.40201 1.50557 1.22886 0.96777 0.99926 1.09130 1.17880 0.87770 0.83684 0.91644 1.22649 0.94777 0.87064 1.03192 1.76221 1.01039 1.22408 1.11730 1.79004 1.10442 0.97865 1.16024 1.47846 1.15841 1.06943 1.35622 0.66188 1.75299 0.96227 1.25132 1.13587 1.82861 1.34401 1.29838 1.64229 1.18845 0.83057 0.94260 0.98164 0.92743 0.92754 0.92908 0.74968 0.81487 0.84321 0.84086 0.81075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.06 13.29 55.43 0.74 -24.32 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.92 8.92 -34.44 -0.31 -14.22 16 8 H 0.08 2.16 6.75 -52.49 -0.35 1.81 16 9 C 0.01 0.18 5.46 -29.03 -0.16 0.02 16 10 C 0.52 10.60 7.63 -10.99 -0.08 10.52 16 11 O -0.52 -11.83 12.63 5.54 0.07 -11.76 16 12 N -0.68 -11.08 5.30 -9.76 -0.05 -11.13 16 13 C 0.16 2.46 6.45 -83.53 -0.54 1.93 16 14 C -0.08 -1.20 8.71 -39.36 -0.34 -1.54 16 15 C -0.12 -1.40 10.02 -39.60 -0.40 -1.80 16 16 C -0.06 -0.78 9.66 -39.29 -0.38 -1.16 16 17 C -0.20 -2.70 5.88 -104.84 -0.62 -3.32 16 18 C 0.43 5.76 6.98 -34.49 -0.24 5.52 16 19 O -0.46 -7.13 17.38 4.95 0.09 -7.05 16 20 C -0.26 -3.04 9.58 -39.16 -0.38 -3.42 16 21 C 0.24 2.82 6.88 -36.49 -0.25 2.57 16 22 C 0.20 2.19 7.99 -156.22 -1.25 0.94 16 23 N -0.24 -2.50 12.06 32.07 0.39 -2.11 16 24 N -0.04 -0.33 13.46 60.35 0.81 0.49 16 25 N -0.21 -1.39 7.89 60.35 0.48 -0.91 16 26 H 0.48 0.82 8.96 -340.33 -3.05 -2.23 16 27 N -0.25 -2.42 12.40 32.09 0.40 -2.03 16 28 O -0.21 -2.70 9.14 4.33 0.04 -2.66 16 29 C 0.10 1.44 6.78 -38.34 -0.26 1.18 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.41 5.82 8.39 -40.82 -0.34 5.48 16 34 H 0.17 2.76 5.76 -52.48 -0.30 2.46 16 35 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.14 1.51 7.79 -52.48 -0.41 1.10 16 37 H 0.17 1.75 7.71 -52.49 -0.40 1.34 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -33.13 338.82 -7.52 -40.66 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.27 Total: 0.95 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -5.30 Total: -1.33 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 2.76 Total: -40.01 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.20 Total: -21.47 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.13 -7.52 -40.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.851 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds