Wall clock time and date at job start Sat Apr 11 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99737 * 2 1 4 4 H 1.48495 * 109.47092 * 269.99768 * 3 2 1 5 5 H 1.48497 * 109.47163 * 30.00310 * 3 2 1 6 6 H 1.48505 * 109.46546 * 150.00265 * 3 2 1 7 7 C 1.37877 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46806 * 179.97438 * 9 7 2 11 11 O 1.21302 * 120.00114 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99966 * 179.97438 * 10 9 7 13 13 C 1.40051 * 120.00162 * 174.47382 * 12 10 9 14 14 C 1.38473 * 120.10324 * 335.15968 * 13 12 10 15 15 C 1.38616 * 120.60150 * 179.72385 * 14 13 12 16 16 C 1.37817 * 120.36320 * 0.57625 * 15 14 13 17 17 C 1.39435 * 119.70787 * 359.70378 * 16 15 14 18 18 C 1.47662 * 121.33200 * 180.02562 * 17 16 15 19 19 O 1.21971 * 121.33103 * 0.02562 * 18 17 16 20 20 C 1.41497 * 117.34018 * 179.97438 * 18 17 16 21 21 C 1.35959 * 119.51890 * 0.02562 * 20 18 17 22 22 C 1.47809 * 118.73448 * 179.97438 * 21 20 18 23 23 N 1.34242 * 126.70431 * 359.68371 * 22 21 20 24 24 N 1.28988 * 107.24746 * 179.83416 * 23 22 21 25 25 N 1.28715 * 109.00422 * 0.43429 * 24 23 22 26 26 H 0.96996 * 125.31457 * 179.74198 * 25 24 23 27 27 N 1.28874 * 109.37760 * 359.72683 * 25 24 23 28 28 O 1.34145 * 122.53860 * 359.96908 * 21 20 18 29 29 C 1.34948 * 122.32921 * 0.04583 * 28 21 20 30 30 H 0.96998 * 119.99585 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47047 * 59.99760 * 9 7 2 32 32 H 1.08993 * 109.46797 * 299.99408 * 9 7 2 33 33 H 0.97000 * 119.99668 * 354.47487 * 12 10 9 34 34 H 1.08003 * 119.70077 * 0.02562 * 14 13 12 35 35 H 1.08000 * 119.81764 * 180.27642 * 15 14 13 36 36 H 1.08003 * 120.14707 * 179.68022 * 16 15 14 37 37 H 1.07998 * 120.24025 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4229 -3.4229 0.0001 12 7 1.7810 -4.9153 0.0011 13 6 2.6858 -5.9780 -0.1157 14 6 3.9125 -5.7817 -0.7274 15 6 4.8180 -6.8247 -0.8435 16 6 4.5039 -8.0769 -0.3611 17 6 3.2703 -8.2917 0.2523 18 6 2.8969 -9.6184 0.7823 19 8 3.6555 -10.5700 0.7015 20 6 1.6244 -9.7413 1.3887 21 6 0.8084 -8.6561 1.4594 22 6 -0.5174 -8.8042 2.0959 23 7 -1.0320 -9.9248 2.6265 24 7 -2.2033 -9.6306 3.0796 25 7 -2.4422 -8.3872 2.8477 26 1 -3.2573 -7.9188 3.0867 27 7 -1.4294 -7.8616 2.2487 28 8 1.1600 -7.4561 0.9738 29 6 2.3513 -7.2395 0.3781 30 1 -0.4849 0.8401 0.0004 31 1 0.6247 -2.5571 -0.8896 32 1 0.6241 -2.5567 0.8903 33 1 0.8311 -5.0938 0.0823 34 1 4.1680 -4.8058 -1.1132 35 1 5.7730 -6.6564 -1.3189 36 1 5.2100 -8.8884 -0.4580 37 1 1.3036 -10.6902 1.7924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:57 Heat of formation + Delta-G solvation = 59.145431 kcal Electronic energy + Delta-G solvation = -28023.764614 eV Core-core repulsion = 23770.043570 eV Total energy + Delta-G solvation = -4253.721044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.77978 -43.17124 -41.17795 -39.97793 -38.90302 -36.05592 -35.79125 -35.13065 -34.97320 -33.31740 -31.99870 -31.70471 -30.08268 -27.25532 -26.18874 -25.93492 -25.21727 -23.91287 -23.16772 -21.77047 -20.74380 -20.24877 -19.65090 -19.04763 -18.55438 -18.49990 -17.77753 -17.52151 -17.35300 -16.64291 -16.48046 -16.22833 -15.94729 -15.85482 -15.42831 -15.35408 -15.14437 -14.81252 -14.20877 -14.00872 -13.94271 -13.67103 -13.31865 -13.17927 -12.83895 -12.78641 -12.70588 -12.59496 -12.45678 -12.40549 -12.04248 -11.71001 -11.46526 -11.15413 -10.62490 -10.60573 -10.50149 -9.91182 -9.05355 -8.25569 -6.32645 -1.08751 -0.44297 -0.11192 0.10212 0.50047 0.92124 1.23820 1.42676 1.43244 1.55036 1.61362 1.86936 1.98044 2.28208 2.43984 2.65711 2.87566 2.97343 3.11080 3.26139 3.56011 3.75815 3.87465 3.96857 4.04407 4.16539 4.23081 4.43708 4.48668 4.69516 4.81561 5.04540 5.08808 5.21455 5.27799 5.32002 5.38780 5.57134 5.72461 5.92826 5.99327 6.32334 6.44557 6.79073 6.80303 7.19027 7.37663 8.86382 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.003208 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.556092 B = 8726.611008 C =11204.159135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.011 3.989 10 C 0.525 3.475 11 O -0.547 6.547 12 N -0.665 5.665 13 C 0.136 3.864 14 C -0.089 4.089 15 C -0.105 4.105 16 C -0.053 4.053 17 C -0.211 4.211 18 C 0.430 3.570 19 O -0.485 6.485 20 C -0.260 4.260 21 C 0.247 3.753 22 C 0.191 3.809 23 N -0.252 5.252 24 N -0.035 5.035 25 N -0.186 5.186 26 H 0.501 0.499 27 N -0.259 5.259 28 O -0.213 6.213 29 C 0.111 3.889 30 H 0.267 0.733 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.424 0.576 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.161 0.839 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 -19.017 2.740 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.079 0.921 9 C -0.029 4.029 10 C 0.316 3.684 11 O -0.423 6.423 12 N -0.311 5.311 13 C 0.040 3.960 14 C -0.110 4.110 15 C -0.123 4.123 16 C -0.072 4.072 17 C -0.214 4.214 18 C 0.317 3.683 19 O -0.368 6.368 20 C -0.284 4.284 21 C 0.196 3.804 22 C -0.088 4.088 23 N -0.127 5.127 24 N -0.030 5.030 25 N -0.038 5.038 26 H 0.361 0.639 27 N -0.114 5.114 28 O -0.117 6.117 29 C 0.064 3.936 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.262 0.738 34 H 0.166 0.834 35 H 0.188 0.812 36 H 0.179 0.821 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.371 -19.246 3.008 19.769 hybrid contribution -0.562 1.446 0.053 1.552 sum -3.933 -17.800 3.060 18.485 Atomic orbital electron populations 1.70024 1.07119 1.28105 1.51061 1.25739 0.95776 1.02630 0.94490 0.85484 0.78534 0.78743 0.78530 1.19731 1.20267 1.19766 1.21355 0.93893 0.90836 1.51311 0.92055 1.19106 0.94128 0.90137 0.99509 1.21727 0.90453 0.83487 0.72692 1.90499 1.18435 1.84736 1.48666 1.43677 1.10840 1.04003 1.72538 1.17291 0.93503 0.84626 1.00552 1.21692 0.91654 1.01802 0.95850 1.21447 1.00637 0.90790 0.99475 1.21296 0.94001 0.98229 0.93636 1.20674 0.97583 0.94806 1.08300 1.18427 0.86556 0.86590 0.76722 1.90736 1.53601 1.40735 1.51768 1.22869 0.96005 1.00490 1.09039 1.17994 0.88224 0.83113 0.91116 1.22509 0.94731 0.87527 1.04024 1.76223 1.01652 1.22568 1.12216 1.78962 1.09857 0.98410 1.15797 1.47896 1.15764 1.06384 1.33764 0.63855 1.75261 0.96759 1.25327 1.14008 1.82850 1.34014 1.30662 1.64191 1.18711 0.83417 0.93712 0.97735 0.92409 0.93169 0.93465 0.73811 0.83356 0.81204 0.82131 0.79761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.66 13.29 21.45 0.28 -51.37 16 2 C 0.01 0.69 5.46 84.65 0.46 1.15 16 3 Si 0.96 43.31 29.54 68.60 2.03 45.33 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.54 -29.58 8.92 25.60 0.23 -29.35 16 8 H 0.06 3.53 6.75 -2.91 -0.02 3.51 16 9 C 0.01 0.50 5.46 29.10 0.16 0.66 16 10 C 0.53 21.98 7.63 87.66 0.67 22.65 16 11 O -0.55 -25.51 12.63 -3.10 -0.04 -25.55 16 12 N -0.67 -21.81 5.30 -303.18 -1.61 -23.41 16 13 C 0.14 4.13 6.45 38.20 0.25 4.37 16 14 C -0.09 -2.60 8.71 22.42 0.20 -2.41 16 15 C -0.11 -2.33 10.02 22.26 0.22 -2.10 16 16 C -0.05 -1.18 9.66 22.46 0.22 -0.96 16 17 C -0.21 -5.38 5.88 -20.01 -0.12 -5.49 16 18 C 0.43 11.01 6.98 25.56 0.18 11.19 16 19 O -0.49 -14.34 17.38 -5.22 -0.09 -14.44 16 20 C -0.26 -5.70 9.58 22.54 0.22 -5.48 16 21 C 0.25 5.48 6.88 24.27 0.17 5.65 16 22 C 0.19 3.89 7.99 137.05 1.10 4.99 16 23 N -0.25 -4.90 12.06 -52.44 -0.63 -5.53 16 24 N -0.04 -0.54 13.46 37.02 0.50 -0.04 16 25 N -0.19 -2.04 7.89 37.02 0.29 -1.75 16 26 H 0.50 0.62 8.96 -347.51 -3.11 -2.50 16 27 N -0.26 -4.65 12.40 -52.40 -0.65 -5.30 16 28 O -0.21 -5.32 9.14 -7.41 -0.07 -5.39 16 29 C 0.11 2.99 6.78 23.08 0.16 3.15 16 30 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.42 11.93 8.39 -92.71 -0.78 11.15 16 34 H 0.15 4.97 5.76 -2.91 -0.02 4.96 16 35 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.16 2.99 7.79 -2.91 -0.02 2.97 16 37 H 0.19 3.51 7.71 -2.91 -0.02 3.49 16 Total: -1.00 -70.70 338.82 1.43 -69.27 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -2.69 Total: 10.17 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 4.10 Total: 8.02 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -1.81 Total: -87.42 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.20 Total: -45.37 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.70 1.43 -69.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.416 kcal (2) G-P(sol) polarization free energy of solvation -70.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds