Wall clock time and date at job start Sat Apr 11 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42097 * 110.54360 * 2 1 4 4 O 1.42099 * 110.54149 * 223.25425 * 2 1 3 5 5 N 1.65598 * 104.45346 * 111.62690 * 2 1 3 6 6 C 1.47580 * 134.49292 * 89.99526 * 5 2 1 7 7 C 1.53945 * 86.11556 * 155.36265 * 6 5 2 8 8 N 1.46501 * 113.74316 * 137.95668 * 7 6 5 9 9 C 1.39672 * 120.00261 * 156.92401 * 8 7 6 10 10 C 1.38168 * 119.99084 * 354.72626 * 9 8 7 11 11 C 1.41125 * 119.50967 * 180.02562 * 10 9 8 12 12 C 1.40354 * 120.25707 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99793 * 329.78850 * 12 11 10 14 14 C 1.46527 * 120.00519 * 149.79361 * 12 11 10 15 15 N 1.29514 * 120.00162 * 163.25741 * 14 12 11 16 16 Si 1.86798 * 119.99639 * 343.25778 * 14 12 11 17 17 H 1.48498 * 109.47398 * 90.54302 * 16 14 12 18 18 H 1.48506 * 109.47054 * 210.54435 * 16 14 12 19 19 H 1.48501 * 109.47264 * 330.54192 * 16 14 12 20 20 C 1.41336 * 119.49026 * 0.02562 * 11 10 9 21 21 C 1.36488 * 119.96816 * 0.02562 * 20 11 10 22 22 C 1.38666 * 120.49571 * 0.25093 * 21 20 11 23 23 N 1.48021 * 119.74202 * 179.71987 * 22 21 20 24 24 O 1.31702 * 119.99787 * 358.93052 * 23 22 21 25 25 O 1.31695 * 120.00222 * 178.92428 * 23 22 21 26 26 C 1.47809 * 134.45548 * 269.87138 * 5 2 1 27 27 H 1.08998 * 109.46904 * 308.37068 * 1 2 3 28 28 H 1.08995 * 109.47810 * 68.37533 * 1 2 3 29 29 H 1.09009 * 109.46949 * 188.37595 * 1 2 3 30 30 H 1.09005 * 113.76807 * 41.06585 * 6 5 2 31 31 H 1.08994 * 113.87643 * 269.67558 * 6 5 2 32 32 H 1.09004 * 113.74283 * 269.15765 * 7 6 5 33 33 H 0.97000 * 119.99474 * 336.92815 * 8 7 6 34 34 H 1.08003 * 120.24759 * 0.04980 * 10 9 8 35 35 H 0.97003 * 119.99812 * 179.97438 * 15 14 12 36 36 H 1.08011 * 120.01983 * 179.97438 * 20 11 10 37 37 H 1.07992 * 119.75587 * 179.97438 * 21 20 11 38 38 H 1.08998 * 113.77538 * 90.37673 * 26 5 2 39 39 H 1.09000 * 113.83508 * 318.90930 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9691 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 2.4854 -1.9388 2.0337 7 6 3.3358 -1.2306 3.1038 8 7 3.1498 -1.7661 4.4547 9 6 4.1461 -1.5928 5.4181 10 6 5.3509 -1.0133 5.0691 11 6 6.3507 -0.8436 6.0505 12 6 7.5805 -0.2573 5.7132 13 1 7.9779 -0.3722 4.7155 14 6 8.3255 0.5104 6.7145 15 7 9.5796 0.7738 6.5272 16 14 7.4661 1.1093 8.2612 17 1 7.5969 0.0849 9.3284 18 1 8.0900 2.3785 8.7142 19 1 6.0283 1.3406 7.9707 20 6 6.1045 -1.2695 7.3755 21 6 4.9071 -1.8403 7.6968 22 6 3.9275 -2.0119 6.7304 23 7 2.6373 -2.6385 7.0959 24 8 2.4312 -3.0498 8.3300 25 8 1.6954 -2.7847 6.1871 26 6 2.4880 0.0205 2.8108 27 1 -0.3633 0.6379 0.8057 28 1 -0.3634 0.3787 -0.9552 29 1 -0.3633 -1.0168 0.1497 30 1 3.0629 -2.5783 1.3661 31 1 1.5984 -2.4310 2.4324 32 1 4.3855 -1.1234 2.8301 33 1 2.3346 -2.2412 4.6800 34 1 5.5261 -0.6923 4.0529 35 1 10.0726 1.2824 7.1899 36 1 6.8639 -1.1441 8.1333 37 1 4.7228 -2.1649 8.7101 38 1 1.6008 0.1067 3.4381 39 1 3.0675 0.9424 2.7625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168224998.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:04 Heat of formation + Delta-G solvation = 12.165578 kcal Electronic energy + Delta-G solvation = -27308.789592 eV Core-core repulsion = 23156.182549 eV Total energy + Delta-G solvation = -4152.607043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.092 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -39.81117 -38.64662 -37.23789 -36.99587 -36.10258 -34.88218 -33.99146 -32.91838 -31.26207 -29.79498 -29.19901 -27.11558 -26.92541 -26.31264 -23.69838 -22.22381 -21.43898 -20.04918 -18.91587 -18.47198 -17.74816 -17.58886 -16.93230 -16.68673 -16.27984 -15.97740 -15.78467 -15.47843 -14.79652 -14.38796 -14.19101 -13.92912 -13.55180 -13.48782 -13.44041 -13.28371 -13.05915 -12.89016 -12.53282 -12.47139 -12.26941 -12.18802 -11.87709 -11.56158 -11.35854 -11.30119 -11.18126 -11.14864 -10.74377 -10.28807 -10.03677 -9.88649 -9.76278 -9.69189 -9.51127 -9.22146 -8.49028 -7.89118 -7.15396 -5.31635 0.02191 0.57893 2.22012 2.32599 2.41286 2.58758 2.66270 2.80444 2.84878 3.39182 3.67662 3.72972 3.80655 3.88664 4.31968 4.47763 4.58675 4.63006 4.78825 5.04464 5.35462 5.36312 5.38912 5.44557 5.60992 5.71366 5.75438 5.79821 6.01137 6.05570 6.20842 6.27686 6.42658 6.60282 6.82096 7.05540 7.15454 7.24579 7.34416 7.65247 7.86581 8.03509 8.08913 8.40588 9.01176 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.003531 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.730789 B = 7928.671413 C = 9819.364061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.678 4.678 2 S 2.634 3.366 3 O -0.951 6.951 4 O -0.953 6.953 5 N -1.035 6.035 6 C 0.117 3.883 7 C 0.123 3.877 8 N -0.724 5.724 9 C 0.299 3.701 10 C -0.299 4.299 11 C 0.108 3.892 12 C -0.345 4.345 13 H 0.109 0.891 14 C 0.069 3.931 15 N -0.722 5.722 16 Si 0.925 3.075 17 H -0.253 1.253 18 H -0.277 1.277 19 H -0.234 1.234 20 C -0.227 4.227 21 C -0.009 4.009 22 C -0.150 4.150 23 N 0.058 4.942 24 O -0.304 6.304 25 O -0.335 6.335 26 C 0.106 3.894 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.415 0.585 34 H 0.123 0.877 35 H 0.308 0.692 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 2.371 -7.265 10.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.827 4.827 2 S 2.728 3.272 3 O -0.942 6.942 4 O -0.944 6.944 5 N -0.874 5.874 6 C -0.010 4.010 7 C 0.013 3.987 8 N -0.372 5.372 9 C 0.191 3.809 10 C -0.325 4.325 11 C 0.103 3.897 12 C -0.370 4.370 13 H 0.127 0.873 14 C -0.165 4.165 15 N -0.339 5.339 16 Si 0.748 3.252 17 H -0.178 1.178 18 H -0.204 1.204 19 H -0.156 1.156 20 C -0.249 4.249 21 C -0.029 4.029 22 C -0.257 4.257 23 N 0.477 4.523 24 O -0.462 6.462 25 O -0.478 6.478 26 C -0.021 4.021 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.140 0.860 33 H 0.268 0.732 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.105 0.895 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.804 2.907 -8.372 10.594 hybrid contribution -1.553 -0.146 1.020 1.864 sum -7.357 2.762 -7.352 10.761 Atomic orbital electron populations 1.30647 1.29559 1.11424 1.11098 1.04240 0.77138 0.73793 0.72018 1.93612 1.77570 1.37563 1.85437 1.93602 1.77632 1.61984 1.61192 1.60120 1.84542 1.18137 1.24607 1.23156 0.99047 0.84697 0.94064 1.22962 1.00438 0.92685 0.82622 1.46063 1.21807 1.61143 1.08168 1.17214 0.89006 0.89472 0.85160 1.20328 0.92374 1.19310 1.00528 1.17560 0.91678 0.89452 0.91048 1.21414 0.97792 1.18781 0.99006 0.87263 1.28120 0.94092 0.93691 1.00594 1.68966 1.08838 1.21197 1.34939 0.86076 0.82440 0.78297 0.78431 1.17840 1.20368 1.15606 1.20947 0.97271 1.09003 0.97654 1.19963 0.90912 0.94542 0.97520 1.19500 0.86150 1.24819 0.95187 1.49893 1.02735 0.98308 1.01411 1.96135 1.89609 1.60014 1.00451 1.95655 1.38988 1.71225 1.41906 1.23533 0.99470 0.99102 0.80004 0.85520 0.85708 0.85540 0.88828 0.89375 0.85994 0.73204 0.85969 0.87896 0.86389 0.85628 0.89472 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -4.40 10.99 101.05 1.11 -3.28 16 2 S 2.63 26.95 6.57 -107.50 -0.71 26.24 16 3 O -0.95 -13.07 18.02 -57.54 -1.04 -14.10 16 4 O -0.95 -12.75 18.02 -57.54 -1.04 -13.79 16 5 N -1.03 -10.95 4.00 -118.74 -0.47 -11.42 16 6 C 0.12 1.24 8.67 -2.97 -0.03 1.21 16 7 C 0.12 1.59 4.27 -70.15 -0.30 1.29 16 8 N -0.72 -11.90 5.42 -53.74 -0.29 -12.19 16 9 C 0.30 5.79 6.64 -83.85 -0.56 5.23 16 10 C -0.30 -5.67 9.06 -38.51 -0.35 -6.01 16 11 C 0.11 2.16 5.17 -106.83 -0.55 1.61 16 12 C -0.35 -7.00 9.84 -35.45 -0.35 -7.35 16 13 H 0.11 2.27 8.06 -52.48 -0.42 1.84 16 14 C 0.07 1.33 5.59 -15.19 -0.08 1.25 16 15 N -0.72 -14.12 13.89 55.98 0.78 -13.34 16 16 Si 0.92 15.78 24.69 -169.99 -4.20 11.59 16 17 H -0.25 -4.18 6.58 56.52 0.37 -3.81 16 18 H -0.28 -4.51 7.11 56.52 0.40 -4.11 16 19 H -0.23 -4.23 7.03 56.52 0.40 -3.83 16 20 C -0.23 -4.49 7.32 -39.04 -0.29 -4.77 16 21 C -0.01 -0.19 9.49 -40.05 -0.38 -0.57 16 22 C -0.15 -3.21 6.93 -79.32 -0.55 -3.76 16 23 N 0.06 1.34 4.98 34.27 0.17 1.51 16 24 O -0.30 -7.44 19.13 -31.57 -0.60 -8.04 16 25 O -0.34 -7.54 16.27 -31.56 -0.51 -8.06 16 26 C 0.11 1.22 8.73 -2.84 -0.02 1.19 16 27 H 0.13 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 32 H 0.12 1.59 6.06 -51.93 -0.31 1.27 16 33 H 0.42 7.17 4.90 -42.22 -0.21 6.96 16 34 H 0.12 2.10 5.99 -52.48 -0.31 1.78 16 35 H 0.31 5.25 8.27 -40.82 -0.34 4.92 16 36 H 0.12 2.18 4.66 -52.48 -0.24 1.94 16 37 H 0.13 2.41 7.55 -52.49 -0.40 2.01 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -29.49 346.86 -9.06 -38.55 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -4.02 Total: 11.81 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.35 Total: -13.97 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.18 Total: -35.44 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -3.19 Total: -43.99 kcal Atomic # 14 Polarization: 15.78 SS G_CDS: -4.20 Total: 11.59 kcal Atomic # 16 Polarization: 26.95 SS G_CDS: -0.71 Total: 26.24 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.49 -9.06 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168224998.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.714 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds