Wall clock time and date at job start Sat Apr 11 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42097 * 110.54360 * 2 1 4 4 O 1.42099 * 110.54149 * 223.25425 * 2 1 3 5 5 N 1.65598 * 104.45346 * 111.62690 * 2 1 3 6 6 C 1.47580 * 134.49292 * 89.99526 * 5 2 1 7 7 C 1.53945 * 86.11556 * 155.36265 * 6 5 2 8 8 N 1.46501 * 113.74316 * 137.95668 * 7 6 5 9 9 C 1.39672 * 120.00261 * 156.92401 * 8 7 6 10 10 C 1.38168 * 119.99084 * 354.72626 * 9 8 7 11 11 C 1.41125 * 119.50967 * 180.02562 * 10 9 8 12 12 C 1.40354 * 120.25707 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99793 * 329.78850 * 12 11 10 14 14 C 1.46527 * 120.00519 * 149.79361 * 12 11 10 15 15 N 1.29514 * 120.00162 * 163.25741 * 14 12 11 16 16 Si 1.86798 * 119.99639 * 343.25778 * 14 12 11 17 17 H 1.48498 * 109.47398 * 90.54302 * 16 14 12 18 18 H 1.48506 * 109.47054 * 210.54435 * 16 14 12 19 19 H 1.48501 * 109.47264 * 330.54192 * 16 14 12 20 20 C 1.41336 * 119.49026 * 0.02562 * 11 10 9 21 21 C 1.36488 * 119.96816 * 0.02562 * 20 11 10 22 22 C 1.38666 * 120.49571 * 0.25093 * 21 20 11 23 23 N 1.48021 * 119.74202 * 179.71987 * 22 21 20 24 24 O 1.31702 * 119.99787 * 358.93052 * 23 22 21 25 25 O 1.31695 * 120.00222 * 178.92428 * 23 22 21 26 26 C 1.47809 * 134.45548 * 269.87138 * 5 2 1 27 27 H 1.08998 * 109.46904 * 308.37068 * 1 2 3 28 28 H 1.08995 * 109.47810 * 68.37533 * 1 2 3 29 29 H 1.09009 * 109.46949 * 188.37595 * 1 2 3 30 30 H 1.09005 * 113.76807 * 41.06585 * 6 5 2 31 31 H 1.08994 * 113.87643 * 269.67558 * 6 5 2 32 32 H 1.09004 * 113.74283 * 269.15765 * 7 6 5 33 33 H 0.97000 * 119.99474 * 336.92815 * 8 7 6 34 34 H 1.08003 * 120.24759 * 0.04980 * 10 9 8 35 35 H 0.97003 * 119.99812 * 179.97438 * 15 14 12 36 36 H 1.08011 * 120.01983 * 179.97438 * 20 11 10 37 37 H 1.07992 * 119.75587 * 179.97438 * 21 20 11 38 38 H 1.08998 * 113.77538 * 90.37673 * 26 5 2 39 39 H 1.09000 * 113.83508 * 318.90930 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9691 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 2.4854 -1.9388 2.0337 7 6 3.3358 -1.2306 3.1038 8 7 3.1498 -1.7661 4.4547 9 6 4.1461 -1.5928 5.4181 10 6 5.3509 -1.0133 5.0691 11 6 6.3507 -0.8436 6.0505 12 6 7.5805 -0.2573 5.7132 13 1 7.9779 -0.3722 4.7155 14 6 8.3255 0.5104 6.7145 15 7 9.5796 0.7738 6.5272 16 14 7.4661 1.1093 8.2612 17 1 7.5969 0.0849 9.3284 18 1 8.0900 2.3785 8.7142 19 1 6.0283 1.3406 7.9707 20 6 6.1045 -1.2695 7.3755 21 6 4.9071 -1.8403 7.6968 22 6 3.9275 -2.0119 6.7304 23 7 2.6373 -2.6385 7.0959 24 8 2.4312 -3.0498 8.3300 25 8 1.6954 -2.7847 6.1871 26 6 2.4880 0.0205 2.8108 27 1 -0.3633 0.6379 0.8057 28 1 -0.3634 0.3787 -0.9552 29 1 -0.3633 -1.0168 0.1497 30 1 3.0629 -2.5783 1.3661 31 1 1.5984 -2.4310 2.4324 32 1 4.3855 -1.1234 2.8301 33 1 2.3346 -2.2412 4.6800 34 1 5.5261 -0.6923 4.0529 35 1 10.0726 1.2824 7.1899 36 1 6.8639 -1.1441 8.1333 37 1 4.7228 -2.1649 8.7101 38 1 1.6008 0.1067 3.4381 39 1 3.0675 0.9424 2.7625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168224998.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:03 Heat of formation + Delta-G solvation = -9.190143 kcal Electronic energy + Delta-G solvation = -27309.715645 eV Core-core repulsion = 23156.182549 eV Total energy + Delta-G solvation = -4153.533097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.092 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.05878 -39.93820 -38.61508 -38.17062 -37.03749 -36.33723 -35.50540 -34.52197 -32.84412 -30.65617 -30.27039 -28.74038 -28.06098 -27.19913 -25.29426 -23.57561 -22.96265 -21.27840 -20.05427 -19.71921 -19.15995 -18.62991 -18.55540 -17.63756 -17.51101 -17.16607 -16.97462 -16.74512 -16.44432 -15.57869 -15.27074 -15.20380 -15.00925 -14.66066 -14.49128 -14.19268 -13.98299 -13.96098 -13.75040 -13.57569 -13.24230 -13.22065 -13.13797 -12.96261 -12.75926 -12.59123 -12.26676 -12.10082 -12.02988 -11.80104 -11.70875 -11.49640 -11.35231 -11.26781 -10.90371 -10.09607 -10.07363 -9.42001 -8.60637 -6.91615 -1.13747 -0.76008 0.65152 0.89408 0.96790 1.26389 1.41735 1.47546 1.49856 2.00515 2.21530 2.56759 2.95694 2.98150 3.12888 3.45180 3.62981 3.83084 4.04494 4.04962 4.12281 4.23756 4.33838 4.45482 4.53202 4.53501 4.65823 4.72424 4.85269 4.86432 4.90095 4.98528 5.11134 5.28130 5.38759 5.47540 5.55181 5.66093 5.79859 6.15876 6.25188 6.43632 6.52332 6.98671 7.53019 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.003531 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.730789 B = 7928.671413 C = 9819.364061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.642 3.358 3 O -0.992 6.992 4 O -0.990 6.990 5 N -1.037 6.037 6 C 0.123 3.877 7 C 0.107 3.893 8 N -0.715 5.715 9 C 0.293 3.707 10 C -0.300 4.300 11 C 0.091 3.909 12 C -0.338 4.338 13 H 0.102 0.898 14 C 0.050 3.950 15 N -0.732 5.732 16 Si 0.957 3.043 17 H -0.241 1.241 18 H -0.259 1.259 19 H -0.250 1.250 20 C -0.212 4.212 21 C -0.027 4.027 22 C -0.147 4.147 23 N 0.056 4.944 24 O -0.375 6.375 25 O -0.350 6.350 26 C 0.110 3.890 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.413 0.587 34 H 0.139 0.861 35 H 0.324 0.676 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.098 0.902 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.519 3.500 -8.082 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.741 3.259 3 O -0.983 6.983 4 O -0.981 6.981 5 N -0.875 5.875 6 C -0.003 4.003 7 C -0.002 4.002 8 N -0.360 5.360 9 C 0.183 3.817 10 C -0.328 4.328 11 C 0.086 3.914 12 C -0.363 4.363 13 H 0.120 0.880 14 C -0.184 4.184 15 N -0.350 5.350 16 Si 0.777 3.223 17 H -0.166 1.166 18 H -0.184 1.184 19 H -0.174 1.174 20 C -0.233 4.233 21 C -0.047 4.047 22 C -0.258 4.258 23 N 0.458 4.542 24 O -0.515 6.515 25 O -0.488 6.488 26 C -0.017 4.017 27 H 0.161 0.839 28 H 0.164 0.836 29 H 0.164 0.836 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.265 0.735 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.116 0.884 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.718 3.966 -9.108 11.462 hybrid contribution -1.276 -0.293 1.024 1.662 sum -6.994 3.674 -8.084 11.303 Atomic orbital electron populations 1.30401 1.23864 1.13339 1.13079 1.03780 0.78880 0.72199 0.71042 1.93559 1.79741 1.39248 1.85760 1.93554 1.79715 1.62630 1.62176 1.59933 1.85517 1.17885 1.24163 1.23179 0.99303 0.84744 0.93063 1.23279 1.01196 0.94329 0.81364 1.46137 1.20778 1.60199 1.08911 1.17315 0.89857 0.89420 0.85105 1.20455 0.91931 1.19253 1.01122 1.17722 0.91983 0.90113 0.91556 1.21597 0.97730 1.17822 0.99125 0.87994 1.28544 0.94411 0.93535 1.01877 1.68923 1.09343 1.20817 1.35964 0.85598 0.80792 0.79163 0.76702 1.16568 1.18445 1.17375 1.21151 0.97030 1.07362 0.97790 1.20098 0.91123 0.95613 0.97895 1.19969 0.85685 1.23772 0.96326 1.49963 1.03318 0.99711 1.01174 1.96105 1.90394 1.63629 1.01380 1.95606 1.39588 1.71810 1.41789 1.23460 0.99555 0.98152 0.80529 0.83911 0.83595 0.83639 0.88166 0.87692 0.86187 0.73543 0.84381 0.86209 0.84967 0.85103 0.88405 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -6.06 10.99 113.37 1.25 -4.82 16 2 S 2.64 50.10 6.57 -56.49 -0.37 49.73 16 3 O -0.99 -26.56 18.02 -127.65 -2.30 -28.86 16 4 O -0.99 -25.56 18.02 -127.65 -2.30 -27.86 16 5 N -1.04 -20.26 4.00 -529.59 -2.12 -22.38 16 6 C 0.12 2.40 8.67 86.49 0.75 3.15 16 7 C 0.11 2.65 4.27 46.75 0.20 2.85 16 8 N -0.72 -23.03 5.42 -323.94 -1.76 -24.79 16 9 C 0.29 11.21 6.64 38.18 0.25 11.46 16 10 C -0.30 -11.08 9.06 22.96 0.21 -10.87 16 11 C 0.09 3.54 5.17 -21.29 -0.11 3.43 16 12 C -0.34 -13.12 9.84 24.95 0.25 -12.88 16 13 H 0.10 4.09 8.06 -2.91 -0.02 4.06 16 14 C 0.05 1.81 5.59 87.20 0.49 2.30 16 15 N -0.73 -26.80 13.89 23.21 0.32 -26.48 16 16 Si 0.96 29.84 24.69 68.60 1.69 31.53 16 17 H -0.24 -7.11 6.58 99.48 0.65 -6.45 16 18 H -0.26 -7.40 7.11 99.48 0.71 -6.69 16 19 H -0.25 -8.55 7.03 99.48 0.70 -7.86 16 20 C -0.21 -8.08 7.32 22.62 0.17 -7.91 16 21 C -0.03 -1.11 9.49 21.96 0.21 -0.90 16 22 C -0.15 -6.33 6.93 36.78 0.26 -6.07 16 23 N 0.06 2.69 4.98 -45.50 -0.23 2.47 16 24 O -0.38 -19.38 19.13 3.51 0.07 -19.31 16 25 O -0.35 -16.08 16.27 3.52 0.06 -16.02 16 26 C 0.11 2.38 8.73 86.44 0.75 3.13 16 27 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.11 1.73 8.11 -2.39 -0.02 1.71 16 32 H 0.12 3.01 6.06 -2.39 -0.01 3.00 16 33 H 0.41 14.08 4.90 -114.84 -0.56 13.52 16 34 H 0.14 4.57 5.99 -2.91 -0.02 4.55 16 35 H 0.32 10.11 8.27 -92.71 -0.77 9.34 16 36 H 0.13 4.61 4.66 -2.90 -0.01 4.59 16 37 H 0.13 5.10 7.55 -2.91 -0.02 5.08 16 38 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -63.98 346.86 -1.77 -65.75 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.50 Total: 33.35 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 4.66 Total: -17.13 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -3.78 Total: -71.18 kcal Atomic # 8 Polarization: -87.58 SS G_CDS: -4.48 Total: -92.06 kcal Atomic # 14 Polarization: 29.84 SS G_CDS: 1.69 Total: 31.53 kcal Atomic # 16 Polarization: 50.10 SS G_CDS: -0.37 Total: 49.73 kcal Total: -63.98 -1.77 -65.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168224998.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.560 kcal (2) G-P(sol) polarization free energy of solvation -63.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds