Wall clock time and date at job start Sat Apr 11 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00073 * 2 1 4 4 H 1.48496 * 109.47440 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47203 * 300.00885 * 3 2 1 6 6 H 1.48502 * 109.46651 * 60.00416 * 3 2 1 7 7 C 1.38946 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00042 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00372 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00388 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99928 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00080 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.46940 * 179.97438 * 12 10 9 14 14 C 1.46896 * 110.99968 * 179.97438 * 13 12 10 15 15 H 1.09004 * 110.91416 * 322.55352 * 14 13 12 16 16 C 1.55151 * 111.00522 * 198.64747 * 14 13 12 17 17 C 1.54326 * 102.94313 * 206.42077 * 16 14 13 18 18 N 1.47021 * 107.27002 * 22.19392 * 17 16 14 19 19 C 1.34778 * 125.64744 * 181.08547 * 18 17 16 20 20 O 1.21722 * 119.99874 * 179.97438 * 19 18 17 21 21 C 1.46488 * 120.00031 * 359.97007 * 19 18 17 22 22 O 1.34988 * 126.00824 * 0.02562 * 21 19 18 23 23 C 1.33943 * 109.40328 * 180.02562 * 22 21 19 24 24 C 1.35072 * 108.82431 * 0.02562 * 23 22 21 25 25 C 1.36717 * 126.01137 * 179.71204 * 21 19 18 26 26 Cl 1.73602 * 126.66393 * 359.97438 * 25 21 19 27 27 C 1.47421 * 108.70450 * 1.06211 * 18 17 16 28 28 H 0.96998 * 119.99869 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99551 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.47093 * 59.99717 * 12 10 9 31 31 H 1.08992 * 109.47052 * 299.99605 * 12 10 9 32 32 H 1.00906 * 110.99708 * 303.95290 * 13 12 10 33 33 H 1.09000 * 110.72429 * 324.79030 * 16 14 13 34 34 H 1.09003 * 110.71831 * 88.06152 * 16 14 13 35 35 H 1.08996 * 109.88384 * 262.77575 * 17 16 14 36 36 H 1.09000 * 109.88276 * 141.61163 * 17 16 14 37 37 H 1.08001 * 125.58848 * 179.97438 * 23 22 21 38 38 H 1.07998 * 126.44155 * 179.97438 * 24 23 22 39 39 H 1.09002 * 110.36865 * 217.03325 * 27 18 17 40 40 H 1.09001 * 110.37117 * 94.70643 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2123 6 1 1.8894 2.3963 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1984 -5.9795 -0.0007 14 6 1.4982 -7.2708 0.0005 15 1 0.6027 -7.2273 0.6205 16 6 2.4400 -8.4138 0.4629 17 6 1.8354 -9.6579 -0.2214 18 7 1.0463 -9.1852 -1.3682 19 6 0.3414 -9.9651 -2.2117 20 8 -0.2781 -9.4626 -3.1311 21 6 0.3211 -11.4175 -2.0221 22 8 0.9603 -12.0997 -1.0484 23 6 0.7150 -13.4091 -1.1879 24 6 -0.0887 -13.5903 -2.2583 25 6 -0.3535 -12.3199 -2.7966 26 17 -1.3409 -11.9652 -4.1797 27 6 1.1532 -7.7167 -1.4425 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 0.0002 30 1 0.6167 -4.9208 -0.8897 31 1 0.6176 -4.9205 0.8903 32 1 2.8327 -5.9124 -0.7826 33 1 3.4582 -8.2389 0.1153 34 1 2.4144 -8.5195 1.5475 35 1 1.1906 -10.1894 0.4784 36 1 2.6332 -10.3157 -0.5663 37 1 1.0978 -14.1918 -0.5497 38 1 -0.4620 -14.5340 -2.6278 39 1 0.2040 -7.2826 -1.7569 40 1 1.9491 -7.4284 -2.1291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185454581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:19 Heat of formation + Delta-G solvation = -44.769166 kcal Electronic energy + Delta-G solvation = -26264.614491 eV Core-core repulsion = 22107.494865 eV Total energy + Delta-G solvation = -4157.119625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.27427 -40.19999 -38.47998 -37.74639 -36.97599 -34.84777 -33.82774 -33.36868 -31.41603 -31.12729 -30.32087 -28.68719 -26.36368 -24.65351 -23.60598 -22.55116 -22.34686 -21.00116 -20.33343 -19.32602 -18.29911 -17.89392 -17.14536 -17.07856 -16.44416 -16.09723 -15.65094 -15.34467 -14.54632 -14.48862 -14.45788 -14.14883 -14.10396 -13.71933 -13.69994 -13.50497 -13.15561 -13.00538 -12.81760 -12.63913 -12.30362 -11.93335 -11.71690 -11.49551 -11.41419 -11.35317 -11.06312 -10.94827 -10.43273 -10.34642 -10.23201 -10.17899 -9.53198 -9.28970 -8.92147 -8.52555 -8.16234 -7.97587 -6.42568 -3.83502 0.45411 1.56654 1.68043 2.21142 2.65442 2.73882 3.16162 3.26960 3.34092 3.87941 3.89933 4.04409 4.19073 4.23908 4.43831 4.50001 4.64513 4.84600 4.95216 4.99010 5.07769 5.11826 5.16496 5.25331 5.36965 5.51520 5.53447 5.61789 5.74153 5.78943 5.88286 5.94151 5.96415 6.20083 6.24335 7.05827 7.08763 7.51180 7.54792 7.67839 8.05045 8.59510 9.16790 9.52803 10.03635 10.75122 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.001905 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.994748 B =14696.400212 C =15570.758666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.047 3.953 13 N -0.650 5.650 14 C 0.078 3.922 15 H 0.097 0.903 16 C -0.120 4.120 17 C 0.100 3.900 18 N -0.605 5.605 19 C 0.609 3.391 20 O -0.502 6.502 21 C -0.054 4.054 22 O -0.147 6.147 23 C 0.005 3.995 24 C -0.214 4.214 25 C -0.052 4.052 26 Cl -0.003 7.003 27 C 0.075 3.925 28 H 0.271 0.729 29 H 0.393 0.607 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.353 0.647 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.219 0.781 38 H 0.166 0.834 39 H 0.083 0.917 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.713 -29.565 -1.148 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.085 4.085 13 N -0.282 5.282 14 C -0.034 4.034 15 H 0.115 0.885 16 C -0.158 4.158 17 C -0.023 4.023 18 N -0.338 5.338 19 C 0.396 3.604 20 O -0.379 6.379 21 C -0.108 4.108 22 O -0.042 6.042 23 C -0.065 4.065 24 C -0.233 4.233 25 C -0.083 4.083 26 Cl 0.026 6.974 27 C -0.049 4.049 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.174 0.826 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.184 0.816 39 H 0.102 0.898 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.203 -28.925 -0.908 28.964 hybrid contribution -0.800 0.500 -1.113 1.459 sum -2.003 -28.424 -2.022 28.566 Atomic orbital electron populations 1.69620 1.05945 1.28104 1.50523 1.25278 0.95649 0.99778 0.97296 0.85792 0.79706 0.81094 0.77706 1.19200 1.20766 1.20738 1.19753 0.93407 0.82183 1.47528 0.87825 1.41870 1.09246 1.04618 1.64165 1.19756 0.88362 0.84681 0.84663 1.90528 1.13713 1.87045 1.55537 1.21759 0.94380 0.90875 1.01525 1.60165 1.18033 0.98993 1.50992 1.22837 0.97134 0.89978 0.93481 0.88529 1.22660 0.99965 0.91867 1.01317 1.22215 0.94981 0.97679 0.87384 1.48213 1.48390 1.08048 1.29196 1.16046 0.79890 0.82218 0.82227 1.90970 1.43677 1.72278 1.30939 1.21804 1.02878 0.92915 0.93168 1.84278 1.57193 1.18776 1.43953 1.24403 0.99474 0.83233 0.99360 1.21687 1.04676 0.97927 0.99031 1.21312 0.99249 0.93502 0.94195 1.98403 1.66474 1.94833 1.37717 1.23286 1.03152 0.78828 0.99683 0.91888 0.77420 0.93487 0.89323 0.82583 0.89626 0.89160 0.90820 0.90852 0.76434 0.81628 0.89813 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 9 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 10 C 0.44 10.17 7.82 -10.98 -0.09 10.09 16 11 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16 12 C 0.05 0.79 6.04 -4.97 -0.03 0.76 16 13 N -0.65 -9.63 6.00 -105.72 -0.63 -10.27 16 14 C 0.08 0.87 3.32 -65.57 -0.22 0.65 16 15 H 0.10 1.04 7.92 -51.93 -0.41 0.63 16 16 C -0.12 -1.07 6.65 -24.90 -0.17 -1.23 16 17 C 0.10 0.84 5.54 -3.06 -0.02 0.82 16 18 N -0.60 -6.78 3.33 -172.12 -0.57 -7.35 16 19 C 0.61 7.87 7.81 -12.94 -0.10 7.77 16 20 O -0.50 -8.00 15.80 5.17 0.08 -7.92 16 21 C -0.05 -0.58 6.95 -36.81 -0.26 -0.83 16 22 O -0.15 -1.16 8.28 4.75 0.04 -1.12 16 23 C 0.01 0.03 12.07 29.61 0.36 0.38 16 24 C -0.21 -1.39 10.88 -39.86 -0.43 -1.82 16 25 C -0.05 -0.53 6.76 -39.28 -0.27 -0.80 16 26 Cl 0.00 -0.04 27.84 -51.86 -1.44 -1.48 16 27 C 0.07 0.87 6.49 -2.53 -0.02 0.85 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.36 8.09 -51.93 -0.42 0.94 16 32 H 0.35 5.44 8.01 -39.29 -0.31 5.13 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.55 7.68 -51.93 -0.40 0.15 16 36 H 0.07 0.55 7.79 -51.93 -0.40 0.15 16 37 H 0.22 0.06 8.06 -52.49 -0.42 -0.37 16 38 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 40 H 0.08 0.90 7.80 -51.93 -0.41 0.49 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -33.93 360.95 -7.55 -41.48 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -4.72 Total: 9.98 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -1.47 Total: 8.67 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.54 Total: -55.59 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.21 Total: -24.51 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.44 Total: -1.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.93 -7.55 -41.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185454581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.294 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds