Wall clock time and date at job start Sat Apr 11 2020 06:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99682 * 359.72372 * 7 2 1 10 10 O 1.42099 * 106.40365 * 293.53683 * 9 7 2 11 11 O 1.42097 * 106.40383 * 66.46366 * 9 7 2 12 12 N 1.65604 * 107.21290 * 180.02562 * 9 7 2 13 13 C 1.46926 * 120.62665 * 269.71486 * 12 9 7 14 14 C 1.52765 * 109.00911 * 233.58647 * 13 12 9 15 15 C 1.53039 * 109.38205 * 305.59171 * 14 13 12 16 16 C 1.50701 * 109.45917 * 181.26074 * 15 14 13 17 17 O 1.21271 * 119.99968 * 269.93554 * 16 15 14 18 18 C 1.47016 * 119.99883 * 89.92668 * 16 15 14 19 19 C 1.39939 * 120.14546 * 359.73447 * 18 16 15 20 20 C 1.37749 * 119.84892 * 179.74196 * 19 18 16 21 21 C 1.38720 * 120.14596 * 0.52657 * 20 19 18 22 22 F 1.35104 * 119.85341 * 179.70372 * 21 20 19 23 23 C 1.38713 * 120.29566 * 359.71883 * 21 20 19 24 24 C 1.37749 * 120.14516 * 0.02835 * 23 21 20 25 25 C 1.53035 * 109.54147 * 61.23852 * 15 14 13 26 26 C 1.46920 * 120.63517 * 89.99974 * 12 9 7 27 27 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58945 * 353.42309 * 13 12 9 29 29 H 1.09006 * 109.58750 * 113.84623 * 13 12 9 30 30 H 1.09000 * 109.56143 * 185.55681 * 14 13 12 31 31 H 1.08993 * 109.35763 * 65.50146 * 14 13 12 32 32 H 1.09000 * 109.45071 * 301.22254 * 15 14 13 33 33 H 1.07998 * 120.07769 * 359.97438 * 19 18 16 34 34 H 1.07998 * 119.92834 * 180.24891 * 20 19 18 35 35 H 1.08004 * 119.93132 * 179.97438 * 23 21 20 36 36 H 1.08004 * 120.07506 * 179.97438 * 24 23 21 37 37 H 1.08994 * 109.49909 * 178.68019 * 25 15 14 38 38 H 1.09005 * 109.49502 * 58.58024 * 25 15 14 39 39 H 1.08994 * 109.58889 * 246.15498 * 26 12 9 40 40 H 1.09005 * 109.58523 * 6.43503 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 0.0061 10 8 0.4566 -2.7929 1.2588 11 8 0.4462 -2.7978 -1.2406 12 7 2.2483 -3.9354 0.0045 13 6 2.7473 -4.4918 -1.2604 14 6 2.5676 -6.0088 -1.2420 15 6 3.2392 -6.5846 0.0067 16 6 3.0898 -8.0842 0.0108 17 8 2.1270 -8.5962 0.5414 18 6 4.1111 -8.9264 -0.6287 19 6 5.2204 -8.3386 -1.2469 20 6 6.1764 -9.1337 -1.8395 21 6 6.0358 -10.5138 -1.8340 22 9 6.9740 -11.2877 -2.4223 23 6 4.9360 -11.1027 -1.2275 24 6 3.9754 -10.3193 -0.6267 25 6 2.5776 -6.0030 1.2581 26 6 2.7616 -4.4821 1.2679 27 1 -0.4850 0.8401 0.0004 28 1 2.1850 -4.0687 -2.0928 29 1 3.8050 -4.2533 -1.3726 30 1 3.0237 -6.4411 -2.1326 31 1 1.5040 -6.2464 -1.2255 32 1 4.2979 -6.3253 0.0018 33 1 5.3287 -7.2641 -1.2560 34 1 7.0351 -8.6816 -2.3135 35 1 4.8322 -12.1777 -1.2270 36 1 3.1194 -10.7790 -0.1551 37 1 3.0408 -6.4313 2.1469 38 1 1.5138 -6.2406 1.2511 39 1 3.8204 -4.2428 1.3663 40 1 2.2103 -4.0507 2.1035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192933157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:23 Heat of formation + Delta-G solvation = -176.905360 kcal Electronic energy + Delta-G solvation = -27191.902920 eV Core-core repulsion = 23011.177184 eV Total energy + Delta-G solvation = -4180.725736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.00854 -41.42775 -39.38284 -38.52198 -37.44303 -36.10381 -35.15991 -33.82427 -32.15867 -32.07378 -31.64918 -28.22995 -26.81135 -24.49185 -24.26263 -23.82854 -21.83836 -20.82162 -20.50071 -19.03473 -18.80601 -18.35705 -17.72895 -17.38565 -17.01208 -16.69367 -16.60696 -16.07576 -15.95796 -15.73084 -15.52753 -15.24745 -15.14624 -14.68713 -14.33582 -14.25293 -14.14723 -13.92985 -13.82414 -13.44177 -13.28178 -13.15500 -13.10783 -12.99109 -12.49932 -12.43830 -12.28603 -12.23533 -12.07545 -11.95640 -11.57174 -11.53438 -11.23060 -10.91610 -10.64131 -10.18660 -9.82480 -9.71738 -8.71735 -7.45794 -0.52985 0.22193 0.33851 1.26483 1.36020 1.36447 1.52613 2.22554 2.60205 2.61443 2.80114 2.92253 3.15225 3.64441 3.70816 3.81372 3.82211 3.87253 4.04851 4.13681 4.18277 4.22672 4.31701 4.43961 4.49131 4.52958 4.74463 4.78656 4.84911 4.86998 4.90834 4.95688 4.97121 5.05763 5.12725 5.16890 5.24184 5.29566 5.37331 5.42669 5.76593 5.94249 6.05719 6.49217 6.80729 8.22947 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.002563 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.194254 B =10923.833124 C =11512.494960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.067 3.933 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.244 1.244 7 C -1.035 5.035 8 H 0.124 0.876 9 S 2.714 3.286 10 O -1.046 7.046 11 O -1.042 7.042 12 N -1.009 6.009 13 C 0.116 3.884 14 C -0.117 4.117 15 C -0.124 4.124 16 C 0.409 3.591 17 O -0.487 6.487 18 C -0.191 4.191 19 C -0.032 4.032 20 C -0.161 4.161 21 C 0.118 3.882 22 F -0.141 7.141 23 C -0.169 4.169 24 C -0.044 4.044 25 C -0.118 4.118 26 C 0.119 3.881 27 H 0.297 0.703 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.042 0.958 32 H 0.142 0.858 33 H 0.175 0.825 34 H 0.167 0.833 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.095 0.905 38 H 0.042 0.958 39 H 0.102 0.898 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.855 -17.081 -3.444 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.146 4.146 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.167 1.167 7 C -1.169 5.169 8 H 0.142 0.858 9 S 2.817 3.183 10 O -1.036 7.036 11 O -1.033 7.033 12 N -0.849 5.849 13 C -0.009 4.009 14 C -0.156 4.156 15 C -0.143 4.143 16 C 0.289 3.711 17 O -0.364 6.364 18 C -0.192 4.192 19 C -0.050 4.050 20 C -0.180 4.180 21 C 0.099 3.901 22 F -0.119 7.119 23 C -0.187 4.187 24 C -0.062 4.062 25 C -0.158 4.158 26 C -0.006 4.006 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.060 0.940 32 H 0.160 0.840 33 H 0.192 0.808 34 H 0.185 0.815 35 H 0.173 0.827 36 H 0.156 0.844 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.120 0.880 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.255 -17.462 -3.182 24.068 hybrid contribution 0.103 0.797 0.022 0.804 sum 16.358 -16.664 -3.160 23.564 Atomic orbital electron populations 1.70013 1.08944 1.32244 1.41799 1.26077 0.95332 1.05562 0.87593 0.85114 0.79195 0.74684 0.80073 1.17779 1.19145 1.16736 1.30984 1.07262 1.12385 1.66239 0.85821 1.00091 0.72929 0.73975 0.71340 1.93284 1.74894 1.88419 1.46977 1.93282 1.74413 1.88394 1.47173 1.57676 1.61953 1.52954 1.12277 1.21482 1.01685 0.93153 0.84564 1.21761 1.00561 0.95413 0.97850 1.21689 1.04490 0.91545 0.96548 1.22729 0.82967 0.91392 0.74025 1.90530 1.31171 1.77404 1.37329 1.20588 0.98644 0.94471 1.05459 1.21701 0.89917 1.02195 0.91176 1.21448 1.02406 0.91035 1.03085 1.18305 0.87233 0.89653 0.94950 1.91522 1.63583 1.75270 1.81528 1.21267 0.94037 1.02258 1.01152 1.21360 0.97793 0.92609 0.94422 1.21776 1.00827 0.94967 0.98197 1.21491 1.01094 0.93343 0.84716 0.89255 0.90655 0.87536 0.86640 0.93952 0.83991 0.80762 0.81499 0.82731 0.84429 0.88699 0.93893 0.88005 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.89 13.19 21.45 0.28 -53.61 16 2 C 0.07 3.67 5.46 84.66 0.46 4.14 16 3 Si 0.99 40.50 29.54 68.60 2.03 42.52 16 4 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 6 H -0.24 -9.17 7.11 99.48 0.71 -8.46 16 7 C -1.04 -55.69 9.75 67.74 0.66 -55.03 16 8 H 0.12 5.86 7.81 -2.92 -0.02 5.84 16 9 S 2.71 145.23 5.01 -56.49 -0.28 144.95 16 10 O -1.05 -63.02 16.61 -128.00 -2.13 -65.15 16 11 O -1.04 -61.97 16.60 -128.00 -2.13 -64.10 16 12 N -1.01 -38.18 3.30 -513.85 -1.69 -39.87 16 13 C 0.12 3.33 6.45 86.22 0.56 3.89 16 14 C -0.12 -2.72 5.33 30.53 0.16 -2.56 16 15 C -0.12 -2.50 1.92 -11.51 -0.02 -2.52 16 16 C 0.41 8.88 6.17 27.99 0.17 9.05 16 17 O -0.49 -14.50 16.19 -3.00 -0.05 -14.55 16 18 C -0.19 -3.10 5.87 -20.15 -0.12 -3.22 16 19 C -0.03 -0.33 9.36 22.57 0.21 -0.12 16 20 C -0.16 -1.63 10.01 22.27 0.22 -1.41 16 21 C 0.12 1.58 7.31 22.50 0.16 1.75 16 22 F -0.14 -2.12 17.26 44.97 0.78 -1.34 16 23 C -0.17 -2.27 10.01 22.27 0.22 -2.04 16 24 C -0.04 -0.70 9.59 22.57 0.22 -0.49 16 25 C -0.12 -3.16 4.93 30.67 0.15 -3.01 16 26 C 0.12 3.66 6.48 86.36 0.56 4.22 16 27 H 0.30 16.05 8.31 -92.71 -0.77 15.28 16 28 H 0.08 2.53 6.91 -2.39 -0.02 2.51 16 29 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.14 1.63 6.47 -2.39 -0.02 1.62 16 33 H 0.18 0.81 6.36 -2.91 -0.02 0.79 16 34 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 35 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.14 2.32 7.65 -2.91 -0.02 2.29 16 37 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.04 1.44 7.91 -2.38 -0.02 1.42 16 39 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 2.54 6.92 -2.38 -0.02 2.53 16 Total: -1.00 -83.13 352.80 1.51 -81.62 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 1.08 Total: 16.88 kcal Atomic # 6 Polarization: -50.98 SS G_CDS: 3.62 Total: -47.36 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -1.41 Total: -93.48 kcal Atomic # 8 Polarization: -139.50 SS G_CDS: -4.30 Total: -143.79 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.34 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 16 Polarization: 145.23 SS G_CDS: -0.28 Total: 144.95 kcal Total: -83.13 1.51 -81.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.285 kcal (2) G-P(sol) polarization free energy of solvation -83.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds