Wall clock time and date at job start Sat Apr 11 2020 06:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00359 * 2 1 4 4 C 1.52996 * 109.47031 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47040 * 174.67932 * 4 3 2 6 6 N 1.46501 * 109.23523 * 302.70878 * 5 4 3 7 7 S 1.65605 * 119.99879 * 295.03177 * 6 5 4 8 8 O 1.42099 * 106.40173 * 180.11388 * 7 6 5 9 9 O 1.42100 * 106.40363 * 313.03639 * 7 6 5 10 10 C 1.76206 * 107.21708 * 66.57813 * 7 6 5 11 11 H 1.07998 * 119.99860 * 5.38203 * 10 7 6 12 12 C 1.37874 * 119.99788 * 185.38919 * 10 7 6 13 13 N 1.31515 * 119.99977 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 119.99932 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47346 * 89.99412 * 14 12 10 16 16 H 1.48494 * 109.47071 * 209.99714 * 14 12 10 17 17 H 1.48505 * 109.47083 * 329.99756 * 14 12 10 18 18 C 1.52591 * 109.24253 * 62.14907 * 5 4 3 19 19 C 1.52966 * 110.02073 * 190.29720 * 18 5 4 20 20 S 1.81669 * 108.97392 * 296.31783 * 19 18 5 21 21 O 1.42105 * 108.66266 * 299.97430 * 20 19 18 22 22 O 1.42096 * 108.75356 * 168.66106 * 20 19 18 23 23 C 1.81675 * 101.30751 * 54.30054 * 20 19 18 24 24 C 1.52583 * 109.24359 * 183.26970 * 5 4 3 25 25 H 1.09000 * 109.47659 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46922 * 299.99866 * 1 2 3 27 27 H 1.08995 * 109.47513 * 59.99484 * 1 2 3 28 28 H 1.08994 * 109.46981 * 60.00317 * 3 2 1 29 29 H 1.08997 * 109.46881 * 299.99981 * 3 2 1 30 30 H 1.08997 * 109.47798 * 54.67802 * 4 3 2 31 31 H 1.08998 * 109.47074 * 294.67125 * 4 3 2 32 32 H 0.96998 * 120.00265 * 115.30733 * 6 5 4 33 33 H 0.97003 * 119.99776 * 180.02562 * 13 12 10 34 34 H 1.09001 * 109.38172 * 310.40636 * 18 5 4 35 35 H 1.08997 * 109.38009 * 70.09224 * 18 5 4 36 36 H 1.09002 * 109.55892 * 176.47570 * 19 18 5 37 37 H 1.09004 * 109.56894 * 56.16320 * 19 18 5 38 38 H 1.09001 * 109.55095 * 185.84500 * 23 20 19 39 39 H 1.08997 * 109.54787 * 65.55794 * 23 20 19 40 40 H 1.09000 * 109.38162 * 289.90713 * 24 5 4 41 41 H 1.09006 * 109.38808 * 49.58989 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1573 2.5761 -0.1344 6 7 3.6616 3.2107 -1.3583 7 16 4.0421 2.5685 -2.8365 8 8 3.4230 3.4014 -3.8072 9 8 5.4387 2.3076 -2.8133 10 6 3.2448 1.0008 -2.9450 11 1 2.5752 0.6802 -2.1607 12 6 3.4760 0.1836 -4.0311 13 7 4.2912 0.5743 -4.9863 14 14 2.6314 -1.4786 -4.1458 15 1 1.3332 -1.3267 -4.8505 16 1 3.4960 -2.4222 -4.8989 17 1 2.3936 -2.0083 -2.7790 18 6 3.7566 3.4238 1.0694 19 6 4.1490 4.8837 0.8358 20 16 5.9577 4.9960 0.7079 21 8 6.5295 4.5249 1.9206 22 8 6.3027 6.2902 0.2332 23 6 6.2979 3.7860 -0.6038 24 6 5.6751 2.4429 -0.2164 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8504 0.5637 -0.8393 31 1 3.8641 0.7280 0.9330 32 1 3.1138 4.0093 -1.3029 33 1 4.4535 -0.0005 -5.7506 34 1 2.6783 3.3589 1.2148 35 1 4.2633 3.0506 1.9594 36 1 3.8040 5.4926 1.6715 37 1 3.6952 5.2402 -0.0889 38 1 7.3752 3.6683 -0.7210 39 1 5.8633 4.1326 -1.5414 40 1 6.0636 2.1301 0.7528 41 1 5.9327 1.6949 -0.9663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193002157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:32 Heat of formation + Delta-G solvation = -196.335966 kcal Electronic energy + Delta-G solvation = -28712.640556 eV Core-core repulsion = 24654.143408 eV Total energy + Delta-G solvation = -4058.497148 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.089 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -39.44112 -37.34362 -36.83248 -35.91866 -35.37545 -34.14485 -33.22711 -31.95620 -31.77262 -30.78049 -27.10820 -26.25247 -25.33128 -23.86068 -22.06459 -20.14019 -19.05996 -18.62275 -17.60984 -17.14257 -16.66725 -16.27077 -16.03411 -15.87587 -15.57264 -15.09235 -14.96093 -14.52437 -14.35177 -13.90011 -13.75652 -13.57037 -13.40505 -13.18249 -12.78682 -12.14560 -12.05377 -12.02984 -11.93009 -11.85696 -11.69905 -11.47157 -11.30842 -11.24739 -11.17926 -10.93615 -10.73463 -10.59360 -10.50554 -10.41289 -10.27585 -10.19119 -9.56370 -9.36131 -9.26347 -9.20793 -8.68722 -6.76325 -5.37431 0.15472 2.15129 2.76209 3.04377 3.12501 3.22558 3.72524 3.85453 4.01774 4.07234 4.35102 4.55784 4.56581 4.59065 4.75872 4.95992 4.97133 5.24244 5.29013 5.31756 5.41124 5.50570 5.52245 5.63683 5.65494 5.71318 5.75446 5.77982 5.83912 5.96895 6.13933 6.19722 6.36470 6.53390 6.61954 6.83771 7.28162 7.42971 7.64050 7.95099 8.85410 10.17221 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.005636 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.294415 B = 4966.712058 C = 6135.962169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.061 3.939 4 C -0.152 4.152 5 C 0.182 3.818 6 N -1.137 6.137 7 S 2.703 3.297 8 O -1.010 7.010 9 O -0.991 6.991 10 C -1.025 5.025 11 H 0.121 0.879 12 C 0.138 3.862 13 N -0.844 5.844 14 Si 0.911 3.089 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.254 1.254 18 C -0.111 4.111 19 C -0.605 4.605 20 S 2.401 3.599 21 O -0.945 6.945 22 O -0.952 6.952 23 C -0.569 4.569 24 C -0.133 4.133 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.403 0.597 33 H 0.290 0.710 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 1.948 12.111 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.015 4.015 4 C -0.190 4.190 5 C 0.092 3.908 6 N -0.891 5.891 7 S 2.804 3.196 8 O -1.000 7.000 9 O -0.980 6.980 10 C -1.158 5.158 11 H 0.139 0.861 12 C -0.081 4.081 13 N -0.473 5.473 14 Si 0.735 3.265 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.178 1.178 18 C -0.150 4.150 19 C -0.734 4.734 20 S 2.585 3.415 21 O -0.942 6.942 22 O -0.949 6.949 23 C -0.700 4.700 24 C -0.173 4.173 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.100 0.900 32 H 0.235 0.765 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.107 0.893 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.531 2.606 11.779 12.327 hybrid contribution -1.959 -1.062 -0.469 2.277 sum -4.490 1.544 11.310 12.267 Atomic orbital electron populations 1.22696 0.81806 1.02336 0.99711 1.87895 1.19004 1.28200 1.95316 1.22608 0.93988 0.84653 1.00254 1.22324 0.93852 0.96580 1.06226 1.19977 0.93371 0.92580 0.84875 1.56458 1.68528 1.41144 1.23010 1.00800 0.74138 0.75474 0.69197 1.93394 1.78484 1.71013 1.57145 1.93353 1.33314 1.86522 1.84860 1.30847 1.43870 1.25297 1.15804 0.86139 1.24688 0.91490 0.99343 0.92557 1.69905 1.30142 1.38541 1.08752 0.86273 0.79547 0.80861 0.79789 1.19473 1.20233 1.17758 1.21659 1.04870 0.89874 0.98609 1.30179 1.26429 1.05292 1.11525 1.08451 0.78577 0.76820 0.77681 1.93553 1.75043 1.82314 1.43307 1.93570 1.81835 1.37447 1.82067 1.29974 1.11096 1.11821 1.17132 1.22072 0.92431 0.97429 1.05326 0.90090 0.94650 0.93890 0.93968 0.91746 0.86186 0.90032 0.76505 0.89957 0.88765 0.88484 0.84874 0.84715 0.84440 0.84864 0.89307 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.39 -6.13 10.46 -35.23 -0.37 -6.50 16 3 C 0.06 0.87 4.22 37.16 0.16 1.03 16 4 C -0.15 -2.21 3.99 -26.73 -0.11 -2.31 16 5 C 0.18 2.50 0.43 -132.24 -0.06 2.44 16 6 N -1.14 -18.33 3.15 0.20 0.00 -18.33 16 7 S 2.70 62.55 4.56 -107.50 -0.49 62.06 16 8 O -1.01 -27.23 18.02 -57.17 -1.03 -28.26 16 9 O -0.99 -24.25 12.88 -57.17 -0.74 -24.99 16 10 C -1.02 -25.01 7.42 30.60 0.23 -24.78 16 11 H 0.12 2.67 4.00 -52.49 -0.21 2.46 16 12 C 0.14 3.56 5.46 -17.82 -0.10 3.46 16 13 N -0.84 -23.27 13.08 55.43 0.73 -22.54 16 14 Si 0.91 19.63 29.54 -169.99 -5.02 14.61 16 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.25 -5.34 7.11 56.52 0.40 -4.93 16 18 C -0.11 -1.12 4.62 -26.96 -0.12 -1.24 16 19 C -0.61 -5.92 6.14 37.14 0.23 -5.69 16 20 S 2.40 31.03 5.30 -107.50 -0.57 30.46 16 21 O -0.94 -14.02 17.94 -57.82 -1.04 -15.06 16 22 O -0.95 -15.47 18.11 -57.82 -1.05 -16.52 16 23 C -0.57 -8.14 5.54 37.17 0.21 -7.94 16 24 C -0.13 -1.92 3.97 -26.93 -0.11 -2.02 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.03 0.36 8.14 -51.92 -0.42 -0.07 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.47 6.52 -51.93 -0.34 0.13 16 29 H 0.06 0.99 6.37 -51.93 -0.33 0.66 16 30 H 0.12 2.13 5.36 -51.93 -0.28 1.86 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.40 5.32 6.94 -34.47 -0.24 5.08 16 33 H 0.29 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.09 0.80 6.09 -51.93 -0.32 0.48 16 35 H 0.10 0.83 8.01 -51.93 -0.42 0.42 16 36 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.13 1.20 6.31 -51.93 -0.33 0.87 16 38 H 0.14 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.13 2.09 5.82 -51.93 -0.30 1.79 16 40 H 0.09 1.01 8.01 -51.93 -0.42 0.59 16 41 H 0.13 2.30 5.96 -51.93 -0.31 1.99 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -36.73 333.71 -8.26 -45.00 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.16 Total: 10.59 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 1.44 Total: -35.56 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.73 Total: -40.87 kcal Atomic # 8 Polarization: -87.10 SS G_CDS: -4.22 Total: -91.32 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 16 Polarization: 93.58 SS G_CDS: -1.06 Total: 92.52 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.73 -8.26 -45.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.340 kcal (2) G-P(sol) polarization free energy of solvation -36.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds