Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.48030 * 2 1 4 4 O 1.42908 * 109.48143 * 239.97054 * 2 1 3 5 5 C 1.42905 * 114.09906 * 178.85719 * 4 2 1 6 6 H 1.08998 * 109.49038 * 181.14308 * 5 4 2 7 7 O 1.42891 * 109.47938 * 301.17603 * 5 4 2 8 8 C 1.42903 * 113.99823 * 294.93928 * 7 5 4 9 9 C 1.53006 * 109.47256 * 180.02562 * 8 7 5 10 10 N 1.46500 * 109.46998 * 65.00196 * 9 8 7 11 11 S 1.65598 * 120.00283 * 165.00335 * 10 9 8 12 12 O 1.42095 * 106.40200 * 178.54147 * 11 10 9 13 13 O 1.42102 * 106.39853 * 311.45909 * 11 10 9 14 14 C 1.76194 * 107.21869 * 64.99577 * 11 10 9 15 15 H 1.07998 * 120.00076 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00009 * 180.02562 * 14 11 10 17 17 N 1.31516 * 120.00008 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 120.00233 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47348 * 89.99798 * 18 16 14 20 20 H 1.48496 * 109.47026 * 209.99858 * 18 16 14 21 21 H 1.48505 * 109.46643 * 329.99751 * 18 16 14 22 22 C 1.53098 * 109.41387 * 61.15773 * 5 4 2 23 23 H 1.09001 * 109.52249 * 62.35867 * 22 5 4 24 24 O 1.42895 * 109.52019 * 182.48833 * 22 5 4 25 25 C 1.53180 * 109.16081 * 302.38872 * 22 5 4 26 26 H 1.08993 * 109.54748 * 297.11224 * 25 22 5 27 27 O 1.42902 * 109.54029 * 176.93796 * 25 22 5 28 28 C 1.53096 * 109.48478 * 120.02377 * 2 1 3 29 29 H 1.08996 * 109.52177 * 297.50281 * 28 2 1 30 30 O 1.42908 * 109.56861 * 57.65626 * 28 2 1 31 31 H 1.09002 * 109.46987 * 299.97233 * 1 2 3 32 32 H 1.08996 * 109.47729 * 59.97681 * 1 2 3 33 33 H 1.09008 * 109.47161 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46868 * 60.00838 * 8 7 5 35 35 H 1.08992 * 109.47403 * 300.00259 * 8 7 5 36 36 H 1.08993 * 109.46955 * 185.00422 * 9 8 7 37 37 H 1.09000 * 109.47050 * 305.00250 * 9 8 7 38 38 H 0.97004 * 119.99709 * 345.00122 * 10 9 8 39 39 H 0.96997 * 119.99837 * 179.97438 * 17 16 14 40 40 H 0.96703 * 113.99886 * 299.99837 * 24 22 5 41 41 H 0.96698 * 113.99895 * 60.00063 * 27 25 22 42 42 H 0.96704 * 114.00039 * 299.71195 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0065 -0.6742 -1.1664 5 6 3.4307 -0.7093 -1.2791 6 1 3.7101 -1.2203 -2.2005 7 8 3.9400 0.6256 -1.3011 8 6 3.5417 1.3808 -2.4470 9 6 4.1418 2.7859 -2.3656 10 7 5.6019 2.6987 -2.4473 11 16 6.4965 4.0573 -2.7575 12 8 7.8588 3.6536 -2.7390 13 8 5.8889 4.6914 -3.8746 14 6 6.2817 5.1468 -1.3895 15 1 5.6519 4.8564 -0.5616 16 6 6.9177 6.3700 -1.3760 17 7 7.6850 6.7234 -2.3839 18 14 6.6906 7.5248 0.0747 19 1 7.7344 7.2498 1.0945 20 1 6.8094 8.9307 -0.3885 21 1 5.3474 7.3119 0.6712 22 6 4.0177 -1.4601 -0.0809 23 1 3.6622 -2.4905 -0.0870 24 8 5.4443 -1.4465 -0.1611 25 6 3.5711 -0.7707 1.2121 26 1 3.9690 0.2436 1.2408 27 8 4.0555 -1.5061 2.3376 28 6 2.0406 -0.7222 1.2496 29 1 1.7149 -0.1842 2.1398 30 8 1.5211 -2.0531 1.2791 31 1 -0.3633 0.5134 0.8903 32 1 -0.3634 0.5142 -0.8897 33 1 -0.3634 -1.0277 -0.0005 34 1 2.4543 1.4510 -2.4758 35 1 3.8979 0.8858 -3.3502 36 1 3.7670 3.3895 -3.1921 37 1 3.8578 3.2481 -1.4202 38 1 6.0447 1.8451 -2.3197 39 1 8.1321 7.5842 -2.3745 40 1 5.7973 -1.8632 -0.9592 41 1 5.0189 -1.5814 2.3732 42 1 0.5554 -2.0980 1.3038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193009577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -330.949021 kcal Electronic energy + Delta-G solvation = -29752.332049 eV Core-core repulsion = 25245.244769 eV Total energy + Delta-G solvation = -4507.087279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84619 -37.99472 -37.38936 -36.23840 -35.60845 -35.18542 -34.15382 -33.91761 -33.04249 -31.90673 -30.81484 -28.38313 -26.96019 -26.10425 -23.91372 -22.73972 -22.17450 -20.48197 -18.99022 -18.35975 -18.05409 -17.62564 -17.42165 -17.20478 -16.28654 -16.17920 -15.95716 -15.63688 -15.26341 -15.00379 -14.69221 -14.54248 -14.10511 -13.97726 -13.75481 -13.38538 -13.11121 -12.90461 -12.57662 -12.57496 -12.49552 -12.35459 -11.96606 -11.80961 -11.60816 -11.22078 -11.19244 -11.14230 -10.85472 -10.59397 -10.44770 -10.37029 -10.26544 -10.17272 -10.12914 -9.97602 -9.62092 -9.22751 -8.99991 -8.45658 -6.67950 -5.29280 2.38366 3.04101 3.08111 3.14841 3.20932 3.38244 3.72120 3.80890 3.95728 4.08209 4.30907 4.33618 4.57042 4.66289 4.77318 4.84397 4.88306 4.93211 4.99042 5.14922 5.18714 5.28378 5.34451 5.39290 5.42624 5.50065 5.67060 5.72226 5.80585 5.99356 6.11712 6.39596 6.54646 6.85255 7.06346 7.28415 7.32155 7.34600 7.47647 7.95170 8.02425 8.91552 10.26218 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.003208 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.704972 B = 8726.797022 C = 8983.226372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 H 0.083 0.917 4 O -0.377 6.377 5 C 0.214 3.786 6 H 0.103 0.897 7 O -0.379 6.379 8 C 0.054 3.946 9 C 0.132 3.868 10 N -1.133 6.133 11 S 2.717 3.283 12 O -1.007 7.007 13 O -1.010 7.010 14 C -1.020 5.020 15 H 0.102 0.898 16 C 0.133 3.867 17 N -0.846 5.846 18 Si 0.920 3.080 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.263 1.263 22 C 0.065 3.935 23 H 0.091 0.909 24 O -0.550 6.550 25 C 0.125 3.875 26 H 0.088 0.912 27 O -0.554 6.554 28 C 0.088 3.912 29 H 0.077 0.923 30 O -0.546 6.546 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.405 0.595 39 H 0.290 0.710 40 H 0.384 0.616 41 H 0.386 0.614 42 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.350 -15.944 5.579 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.004 4.004 3 H 0.101 0.899 4 O -0.298 6.298 5 C 0.118 3.882 6 H 0.121 0.879 7 O -0.300 6.300 8 C -0.023 4.023 9 C 0.004 3.996 10 N -0.889 5.889 11 S 2.816 3.184 12 O -0.997 6.997 13 O -1.000 7.000 14 C -1.153 5.153 15 H 0.120 0.880 16 C -0.085 4.085 17 N -0.476 5.476 18 Si 0.744 3.256 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.187 1.187 22 C 0.005 3.995 23 H 0.109 0.891 24 O -0.356 6.356 25 C 0.065 3.935 26 H 0.106 0.894 27 O -0.360 6.360 28 C 0.028 3.972 29 H 0.095 0.905 30 O -0.352 6.352 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.236 0.764 39 H 0.101 0.899 40 H 0.232 0.768 41 H 0.235 0.765 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -13.891 -15.404 5.348 21.421 hybrid contribution -0.074 0.365 0.599 0.705 sum -13.965 -15.039 5.947 21.367 Atomic orbital electron populations 1.21782 0.92194 1.03109 1.03539 1.22814 0.95847 0.96878 0.84906 0.89936 1.88096 1.21601 1.76964 1.43173 1.24234 0.79670 0.85431 0.98847 0.87926 1.88128 1.72427 1.24531 1.44895 1.22844 0.99000 0.92558 0.87890 1.21076 0.81434 0.94477 1.02578 1.55873 1.14555 1.26891 1.91556 1.00329 0.71470 0.71369 0.75223 1.93372 1.34589 1.82869 1.88903 1.93351 1.78044 1.74869 1.53698 1.30563 1.42096 1.16699 1.25981 0.88004 1.24741 0.90376 0.96907 0.96468 1.69898 1.24796 1.23133 1.29767 0.86174 0.79687 0.78668 0.81065 1.19213 1.20021 1.18730 1.23073 0.82108 0.99454 0.94877 0.89137 1.86498 1.18462 1.83458 1.47188 1.21771 0.91765 0.95860 0.84098 0.89415 1.86469 1.27593 1.76821 1.45111 1.22487 0.92159 0.84983 0.97567 0.90500 1.86602 1.25758 1.25677 1.97173 0.90562 0.90796 0.91513 0.91755 0.92404 0.89245 0.91562 0.76364 0.89936 0.76761 0.76534 0.77771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.21 37.15 0.34 -0.61 16 2 C 0.05 0.49 2.88 -26.68 -0.08 0.41 16 3 H 0.08 0.82 7.56 -51.93 -0.39 0.43 16 4 O -0.38 -4.00 9.66 -63.03 -0.61 -4.61 16 5 C 0.21 2.29 3.31 37.21 0.12 2.41 16 6 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 7 O -0.38 -4.85 8.48 -64.00 -0.54 -5.40 16 8 C 0.05 0.68 6.00 37.16 0.22 0.91 16 9 C 0.13 2.14 6.61 -4.04 -0.03 2.11 16 10 N -1.13 -22.21 5.96 -10.61 -0.06 -22.28 16 11 S 2.72 71.59 5.02 -107.50 -0.54 71.05 16 12 O -1.01 -29.63 18.02 -57.17 -1.03 -30.66 16 13 O -1.01 -29.08 17.49 -57.17 -1.00 -30.08 16 14 C -1.02 -28.06 9.72 30.60 0.30 -27.76 16 15 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 16 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 17 N -0.85 -24.96 13.19 55.43 0.73 -24.23 16 18 Si 0.92 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 22 C 0.06 0.69 2.96 -26.59 -0.08 0.62 16 23 H 0.09 0.98 7.83 -51.93 -0.41 0.58 16 24 O -0.55 -5.83 12.79 -55.02 -0.70 -6.53 16 25 C 0.12 1.45 2.87 -26.55 -0.08 1.37 16 26 H 0.09 1.12 7.82 -51.93 -0.41 0.71 16 27 O -0.55 -6.75 13.18 -55.12 -0.73 -7.48 16 28 C 0.09 0.86 3.06 -26.59 -0.08 0.78 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 O -0.55 -5.42 12.52 -55.65 -0.70 -6.12 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.36 6.76 -51.92 -0.35 0.01 16 34 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.45 7.75 -51.93 -0.40 1.05 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.41 7.17 8.51 -34.47 -0.29 6.88 16 39 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.38 2.58 9.08 45.56 0.41 3.00 16 41 H 0.39 3.76 8.71 45.56 0.40 4.16 16 42 H 0.37 2.23 7.33 45.56 0.33 2.56 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -38.97 363.30 -7.77 -46.74 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -3.59 Total: 14.65 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 0.55 Total: -16.14 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.67 Total: -46.51 kcal Atomic # 8 Polarization: -85.57 SS G_CDS: -5.31 Total: -90.88 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 71.59 SS G_CDS: -0.54 Total: 71.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.97 -7.77 -46.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193009577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -284.207 kcal (2) G-P(sol) polarization free energy of solvation -38.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -323.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -330.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds