Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.48030 * 2 1 4 4 O 1.42908 * 109.48143 * 239.97054 * 2 1 3 5 5 C 1.42905 * 114.09906 * 178.85719 * 4 2 1 6 6 H 1.08998 * 109.49038 * 181.14308 * 5 4 2 7 7 O 1.42891 * 109.47938 * 301.17603 * 5 4 2 8 8 C 1.42903 * 113.99823 * 294.93928 * 7 5 4 9 9 C 1.53006 * 109.47256 * 180.02562 * 8 7 5 10 10 N 1.46500 * 109.46998 * 65.00196 * 9 8 7 11 11 S 1.65598 * 120.00283 * 165.00335 * 10 9 8 12 12 O 1.42095 * 106.40200 * 178.54147 * 11 10 9 13 13 O 1.42102 * 106.39853 * 311.45909 * 11 10 9 14 14 C 1.76194 * 107.21869 * 64.99577 * 11 10 9 15 15 H 1.07998 * 120.00076 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00009 * 180.02562 * 14 11 10 17 17 N 1.31516 * 120.00008 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 120.00233 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47348 * 89.99798 * 18 16 14 20 20 H 1.48496 * 109.47026 * 209.99858 * 18 16 14 21 21 H 1.48505 * 109.46643 * 329.99751 * 18 16 14 22 22 C 1.53098 * 109.41387 * 61.15773 * 5 4 2 23 23 H 1.09001 * 109.52249 * 62.35867 * 22 5 4 24 24 O 1.42895 * 109.52019 * 182.48833 * 22 5 4 25 25 C 1.53180 * 109.16081 * 302.38872 * 22 5 4 26 26 H 1.08993 * 109.54748 * 297.11224 * 25 22 5 27 27 O 1.42902 * 109.54029 * 176.93796 * 25 22 5 28 28 C 1.53096 * 109.48478 * 120.02377 * 2 1 3 29 29 H 1.08996 * 109.52177 * 297.50281 * 28 2 1 30 30 O 1.42908 * 109.56861 * 57.65626 * 28 2 1 31 31 H 1.09002 * 109.46987 * 299.97233 * 1 2 3 32 32 H 1.08996 * 109.47729 * 59.97681 * 1 2 3 33 33 H 1.09008 * 109.47161 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46868 * 60.00838 * 8 7 5 35 35 H 1.08992 * 109.47403 * 300.00259 * 8 7 5 36 36 H 1.08993 * 109.46955 * 185.00422 * 9 8 7 37 37 H 1.09000 * 109.47050 * 305.00250 * 9 8 7 38 38 H 0.97004 * 119.99709 * 345.00122 * 10 9 8 39 39 H 0.96997 * 119.99837 * 179.97438 * 17 16 14 40 40 H 0.96703 * 113.99886 * 299.99837 * 24 22 5 41 41 H 0.96698 * 113.99895 * 60.00063 * 27 25 22 42 42 H 0.96704 * 114.00039 * 299.71195 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0065 -0.6742 -1.1664 5 6 3.4307 -0.7093 -1.2791 6 1 3.7101 -1.2203 -2.2005 7 8 3.9400 0.6256 -1.3011 8 6 3.5417 1.3808 -2.4470 9 6 4.1418 2.7859 -2.3656 10 7 5.6019 2.6987 -2.4473 11 16 6.4965 4.0573 -2.7575 12 8 7.8588 3.6536 -2.7390 13 8 5.8889 4.6914 -3.8746 14 6 6.2817 5.1468 -1.3895 15 1 5.6519 4.8564 -0.5616 16 6 6.9177 6.3700 -1.3760 17 7 7.6850 6.7234 -2.3839 18 14 6.6906 7.5248 0.0747 19 1 7.7344 7.2498 1.0945 20 1 6.8094 8.9307 -0.3885 21 1 5.3474 7.3119 0.6712 22 6 4.0177 -1.4601 -0.0809 23 1 3.6622 -2.4905 -0.0870 24 8 5.4443 -1.4465 -0.1611 25 6 3.5711 -0.7707 1.2121 26 1 3.9690 0.2436 1.2408 27 8 4.0555 -1.5061 2.3376 28 6 2.0406 -0.7222 1.2496 29 1 1.7149 -0.1842 2.1398 30 8 1.5211 -2.0531 1.2791 31 1 -0.3633 0.5134 0.8903 32 1 -0.3634 0.5142 -0.8897 33 1 -0.3634 -1.0277 -0.0005 34 1 2.4543 1.4510 -2.4758 35 1 3.8979 0.8858 -3.3502 36 1 3.7670 3.3895 -3.1921 37 1 3.8578 3.2481 -1.4202 38 1 6.0447 1.8451 -2.3197 39 1 8.1321 7.5842 -2.3745 40 1 5.7973 -1.8632 -0.9592 41 1 5.0189 -1.5814 2.3732 42 1 0.5554 -2.0980 1.3038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193009577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -370.034849 kcal Electronic energy + Delta-G solvation = -29754.026938 eV Core-core repulsion = 25245.244769 eV Total energy + Delta-G solvation = -4508.782168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.116 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.64222 -38.91205 -38.18488 -37.42977 -37.12365 -36.43457 -36.12526 -35.53165 -35.11221 -32.57842 -31.66270 -29.57095 -28.24375 -27.74527 -24.72421 -23.64509 -23.20252 -21.29561 -21.01637 -19.40229 -19.14694 -18.83527 -18.40605 -18.29521 -17.96013 -17.41846 -16.99287 -16.76290 -16.59921 -16.25427 -15.97637 -15.64899 -15.61781 -15.21528 -14.90823 -14.61658 -14.11194 -13.99771 -13.79715 -13.59955 -13.46277 -13.26717 -13.20490 -13.03582 -13.00707 -12.82296 -12.50024 -12.48983 -12.41238 -12.29708 -12.09140 -11.88938 -11.58727 -11.24383 -11.21715 -11.12611 -10.99929 -10.88256 -10.38775 -10.16985 -8.74403 -7.46869 0.38722 1.34391 1.35187 1.50821 2.21155 2.23214 2.56438 2.59257 2.97253 3.03052 3.07314 3.23370 3.52791 3.58885 3.72396 3.81053 4.01969 4.09754 4.17623 4.20902 4.23825 4.28300 4.43877 4.45092 4.59077 4.62891 4.69907 4.76432 4.84248 4.86098 4.98177 5.13092 5.23181 5.32556 5.63492 5.91269 6.22323 6.42355 6.61681 6.69823 6.79431 6.79833 8.22007 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.003208 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.704972 B = 8726.797022 C = 8983.226372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 H 0.073 0.927 4 O -0.382 6.382 5 C 0.213 3.787 6 H 0.122 0.878 7 O -0.395 6.395 8 C 0.064 3.936 9 C 0.121 3.879 10 N -1.117 6.117 11 S 2.724 3.276 12 O -1.047 7.047 13 O -1.042 7.042 14 C -1.041 5.041 15 H 0.118 0.882 16 C 0.070 3.930 17 N -0.894 5.894 18 Si 0.989 3.011 19 H -0.258 1.258 20 H -0.262 1.262 21 H -0.247 1.247 22 C 0.072 3.928 23 H 0.090 0.910 24 O -0.565 6.565 25 C 0.115 3.885 26 H 0.071 0.929 27 O -0.566 6.566 28 C 0.091 3.909 29 H 0.084 0.916 30 O -0.560 6.560 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.416 0.584 39 H 0.299 0.701 40 H 0.400 0.600 41 H 0.393 0.607 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.202 -16.395 6.769 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.006 4.006 3 H 0.091 0.909 4 O -0.303 6.303 5 C 0.117 3.883 6 H 0.140 0.860 7 O -0.316 6.316 8 C -0.014 4.014 9 C -0.005 4.005 10 N -0.877 5.877 11 S 2.824 3.176 12 O -1.037 7.037 13 O -1.032 7.032 14 C -1.174 5.174 15 H 0.136 0.864 16 C -0.142 4.142 17 N -0.526 5.526 18 Si 0.807 3.193 19 H -0.182 1.182 20 H -0.186 1.186 21 H -0.170 1.170 22 C 0.012 3.988 23 H 0.108 0.892 24 O -0.373 6.373 25 C 0.056 3.944 26 H 0.089 0.911 27 O -0.374 6.374 28 C 0.031 3.969 29 H 0.102 0.898 30 O -0.369 6.369 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.249 0.751 39 H 0.109 0.891 40 H 0.250 0.750 41 H 0.242 0.758 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -15.754 -15.888 6.515 23.303 hybrid contribution 0.469 0.397 0.230 0.656 sum -15.284 -15.490 6.745 22.783 Atomic orbital electron populations 1.21812 0.89965 1.04102 1.04353 1.22939 0.97536 0.95997 0.84153 0.90926 1.88096 1.21313 1.77066 1.43789 1.24392 0.79834 0.84465 0.99603 0.86036 1.88102 1.72901 1.25671 1.44952 1.22718 0.99881 0.90379 0.88376 1.21360 0.79080 0.97388 1.02714 1.55251 1.15948 1.25336 1.91201 0.99754 0.70911 0.72053 0.74887 1.93308 1.37419 1.83677 1.89292 1.93302 1.78407 1.76321 1.55147 1.30921 1.42404 1.17394 1.26699 0.86365 1.25994 0.89636 0.98941 0.99670 1.69988 1.26103 1.24286 1.32174 0.85148 0.80566 0.76567 0.77003 1.18184 1.18608 1.17001 1.22957 0.82122 0.99177 0.94509 0.89191 1.86470 1.18554 1.83810 1.48489 1.21885 0.93135 0.94990 0.84433 0.91130 1.86444 1.28403 1.76893 1.45655 1.22441 0.91030 0.85171 0.98263 0.89787 1.86557 1.27479 1.25649 1.97214 0.88866 0.90881 0.90438 0.89503 0.91201 0.89453 0.91295 0.75064 0.89134 0.74972 0.75758 0.75830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.21 71.98 0.66 -0.81 16 2 C 0.05 0.85 2.88 30.62 0.09 0.93 16 3 H 0.07 1.34 7.56 -2.39 -0.02 1.32 16 4 O -0.38 -7.25 9.66 -122.40 -1.18 -8.43 16 5 C 0.21 4.14 3.31 72.01 0.24 4.37 16 6 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 7 O -0.40 -9.46 8.48 -121.47 -1.03 -10.49 16 8 C 0.06 1.47 6.00 71.98 0.43 1.90 16 9 C 0.12 3.79 6.61 86.38 0.57 4.36 16 10 N -1.12 -43.39 5.96 -187.49 -1.12 -44.51 16 11 S 2.72 145.60 5.02 -56.49 -0.28 145.31 16 12 O -1.05 -63.06 18.02 -128.00 -2.31 -65.37 16 13 O -1.04 -61.22 17.49 -128.00 -2.24 -63.45 16 14 C -1.04 -57.23 9.72 67.73 0.66 -56.57 16 15 H 0.12 5.88 7.81 -2.91 -0.02 5.86 16 16 C 0.07 3.92 5.46 84.65 0.46 4.38 16 17 N -0.89 -53.46 13.19 21.45 0.28 -53.18 16 18 Si 0.99 41.31 29.54 68.60 2.03 43.34 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 21 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 22 C 0.07 1.46 2.96 30.69 0.09 1.55 16 23 H 0.09 1.84 7.83 -2.39 -0.02 1.82 16 24 O -0.56 -11.42 12.79 -130.06 -1.66 -13.08 16 25 C 0.11 2.59 2.87 30.71 0.09 2.67 16 26 H 0.07 1.79 7.82 -2.39 -0.02 1.78 16 27 O -0.57 -13.54 13.18 -129.96 -1.71 -15.26 16 28 C 0.09 1.65 3.06 30.69 0.09 1.74 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 O -0.56 -10.09 12.52 -129.46 -1.62 -11.71 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.62 6.76 -2.38 -0.02 0.60 16 34 H 0.09 1.65 7.75 -2.39 -0.02 1.63 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.09 2.78 7.75 -2.39 -0.02 2.76 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.42 14.48 8.51 -96.74 -0.82 13.66 16 39 H 0.30 16.02 8.31 -92.71 -0.77 15.25 16 40 H 0.40 4.87 9.08 -74.06 -0.67 4.20 16 41 H 0.39 7.61 8.71 -74.06 -0.65 6.96 16 42 H 0.39 3.75 7.33 -74.05 -0.54 3.20 16 Total: -1.00 -84.06 363.30 -9.04 -93.10 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: -1.58 Total: 39.17 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 3.39 Total: -35.46 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -0.84 Total: -97.68 kcal Atomic # 8 Polarization: -176.03 SS G_CDS: -11.75 Total: -187.78 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 145.60 SS G_CDS: -0.28 Total: 145.31 kcal Total: -84.06 -9.04 -93.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193009577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -276.933 kcal (2) G-P(sol) polarization free energy of solvation -84.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -360.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -370.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds