Wall clock time and date at job start Sat Apr 11 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 120.00167 * 2 1 4 4 H 1.48496 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47192 * 299.99610 * 3 2 1 6 6 H 1.48505 * 109.46983 * 59.99843 * 3 2 1 7 7 C 1.38956 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99994 * 197.99784 * 7 2 1 9 9 N 1.37093 * 119.99437 * 17.99432 * 7 2 1 10 10 C 1.34779 * 120.00160 * 44.49410 * 9 7 2 11 11 O 1.21290 * 120.00012 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99999 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47060 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.47223 * 179.97438 * 13 12 10 15 15 C 1.38234 * 119.99681 * 269.72243 * 14 13 12 16 16 C 1.38235 * 119.99818 * 179.74355 * 15 14 13 17 17 C 1.38234 * 119.99737 * 0.52986 * 16 15 14 18 18 S 1.76202 * 119.99865 * 179.76842 * 17 16 15 19 19 O 1.42098 * 106.40411 * 23.52034 * 18 17 16 20 20 O 1.42105 * 106.40416 * 156.43878 * 18 17 16 21 21 F 1.61006 * 107.21897 * 269.97817 * 18 17 16 22 22 C 1.38234 * 120.00222 * 359.74977 * 17 16 15 23 23 C 1.38233 * 120.00006 * 359.97059 * 22 17 16 24 24 C 1.46503 * 119.99916 * 224.48530 * 9 7 2 25 25 C 1.52995 * 117.50028 * 3.27623 * 24 9 7 26 26 C 1.53002 * 117.49892 * 294.61708 * 24 9 7 27 27 H 0.97006 * 119.99838 * 354.96572 * 1 2 3 28 28 H 1.08994 * 109.47650 * 59.99681 * 12 10 9 29 29 H 1.09007 * 109.46960 * 299.99316 * 12 10 9 30 30 H 1.09000 * 109.47355 * 299.99553 * 13 12 10 31 31 H 1.08993 * 109.47526 * 59.99741 * 13 12 10 32 32 H 1.08001 * 120.00134 * 0.02562 * 15 14 13 33 33 H 1.07996 * 120.00337 * 180.29527 * 16 15 14 34 34 H 1.07999 * 120.00071 * 180.02562 * 22 17 16 35 35 H 1.07998 * 120.00239 * 179.97438 * 23 22 17 36 36 H 1.08999 * 115.54804 * 148.95031 * 24 9 7 37 37 H 1.09004 * 117.49943 * 0.02562 * 25 24 9 38 38 H 1.08999 * 117.49997 * 145.02009 * 25 24 9 39 39 H 1.08999 * 117.50222 * 214.97899 * 26 24 9 40 40 H 1.08999 * 117.50125 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0492 -1.2261 0.2895 9 7 1.3736 -2.3617 -0.3657 10 6 0.5768 -2.3786 -1.4526 11 8 0.4214 -1.3689 -2.1064 12 6 -0.1211 -3.6521 -1.8555 13 6 -0.9568 -3.4000 -3.1121 14 6 -1.6542 -4.6737 -3.5154 15 6 -1.0391 -5.5519 -4.3879 16 6 -1.6766 -6.7227 -4.7537 17 6 -2.9336 -7.0100 -4.2556 18 16 -3.7487 -8.4994 -4.7267 19 8 -2.7295 -9.4061 -5.1244 20 8 -4.6862 -8.7865 -3.6981 21 9 -4.6092 -8.1744 -6.0482 22 6 -3.5512 -6.1289 -3.3877 23 6 -2.9113 -4.9609 -3.0173 24 6 1.5610 -3.5812 0.4242 25 6 2.4157 -3.4793 1.6891 26 6 2.9615 -4.1967 0.4520 27 1 -0.4850 0.8369 0.0737 28 1 -0.7727 -3.9811 -1.0462 29 1 0.6210 -4.4237 -2.0611 30 1 -1.6989 -2.6286 -2.9062 31 1 -0.3056 -3.0708 -3.9216 32 1 -0.0587 -5.3256 -4.7801 33 1 -1.1941 -7.4112 -5.4316 34 1 -4.5331 -6.3535 -2.9983 35 1 -3.3939 -4.2723 -2.3396 36 1 0.7110 -4.2633 0.4447 37 1 2.8382 -2.5047 1.9338 38 1 2.1282 -4.0945 2.5417 39 1 3.0329 -5.2836 0.4912 40 1 3.7433 -3.6946 -0.1178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516802430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:27 Heat of formation + Delta-G solvation = -104.514174 kcal Electronic energy + Delta-G solvation = -26695.186879 eV Core-core repulsion = 22517.600261 eV Total energy + Delta-G solvation = -4177.586618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -48.45961 -39.75334 -38.59634 -37.97105 -36.61761 -36.23813 -34.08876 -32.77155 -31.33597 -31.04844 -29.75762 -25.89368 -24.05755 -23.16641 -21.86471 -21.61711 -21.11260 -20.59288 -19.08690 -18.76594 -17.99047 -17.06678 -16.70163 -16.11358 -15.74351 -15.59030 -15.12580 -14.79480 -14.57798 -14.46649 -14.36940 -14.10648 -13.79965 -13.67711 -13.52966 -13.16779 -12.92981 -12.79635 -12.68519 -12.40273 -12.15131 -12.12376 -11.57525 -11.43112 -11.19146 -10.97530 -10.93190 -10.89883 -10.77657 -10.44125 -10.19140 -10.01642 -9.79063 -9.41008 -9.30733 -8.75985 -8.07735 -7.08133 -6.16745 -3.92155 -0.47538 0.45467 1.05852 2.58130 2.89417 3.25361 3.34910 3.36772 3.37255 3.70972 4.05397 4.21536 4.47649 4.56787 4.59089 4.72248 4.89176 5.05116 5.10245 5.23561 5.39892 5.45192 5.51968 5.55947 5.63896 5.68832 5.73592 5.78590 5.90501 6.00808 6.08925 6.17969 6.19032 6.43465 6.45548 6.53149 6.62396 6.70658 6.88708 7.57394 8.22204 9.01384 9.09728 9.61326 10.23176 10.92491 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.021431 B = 0.002382 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.232299 B =11752.630882 C =12403.878641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.348 4.348 8 H 0.077 0.923 9 N -0.429 5.429 10 C 0.483 3.517 11 O -0.535 6.535 12 C -0.126 4.126 13 C -0.075 4.075 14 C 0.002 3.998 15 C -0.139 4.139 16 C -0.013 4.013 17 C -0.705 4.705 18 S 2.670 3.330 19 O -0.930 6.930 20 O -0.930 6.930 21 F -0.475 7.475 22 C -0.013 4.013 23 C -0.137 4.137 24 C 0.075 3.925 25 C -0.174 4.174 26 C -0.208 4.208 27 H 0.263 0.737 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 -14.652 -7.340 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.212 1.212 7 C -0.475 4.475 8 H 0.095 0.905 9 N -0.149 5.149 10 C 0.270 3.730 11 O -0.413 6.413 12 C -0.166 4.166 13 C -0.113 4.113 14 C 0.001 3.999 15 C -0.158 4.158 16 C -0.032 4.032 17 C -0.795 4.795 18 S 2.761 3.239 19 O -0.929 6.929 20 O -0.929 6.929 21 F -0.474 7.474 22 C -0.032 4.032 23 C -0.156 4.156 24 C -0.032 4.032 25 C -0.211 4.211 26 C -0.247 4.247 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.741 -14.611 -7.950 17.948 hybrid contribution 0.691 1.389 0.429 1.610 sum -6.050 -13.222 -7.520 16.370 Atomic orbital electron populations 1.69824 1.06544 1.27280 1.43132 1.25240 0.94843 0.99376 0.94208 0.86158 0.79817 0.82617 0.77508 1.19598 1.20646 1.21175 1.18883 0.94390 0.83763 1.50473 0.90534 1.42785 1.44106 1.06890 1.21163 1.19707 0.83042 0.88701 0.81506 1.90532 1.62698 1.34857 1.53173 1.21565 0.99085 0.98947 0.97027 1.20559 0.99568 0.92552 0.98624 1.20683 0.93146 0.95326 0.90727 1.21300 1.01028 0.94148 0.99275 1.20927 0.91530 0.95888 0.94905 1.30221 1.09477 1.23373 1.16388 1.03837 0.73690 0.74844 0.71512 1.93740 1.57293 1.59817 1.82063 1.93744 1.62374 1.82797 1.53958 1.93685 1.85949 1.95469 1.72346 1.20940 0.98959 0.91733 0.91559 1.21331 0.95415 0.97580 1.01306 1.21701 0.92531 0.91636 0.97291 1.23070 1.04502 1.02466 0.91106 1.23321 0.99749 0.98460 1.03135 0.92671 0.90564 0.90550 0.89378 0.89711 0.84402 0.83899 0.83871 0.84301 0.88079 0.87489 0.89803 0.89806 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.96 11.74 55.50 0.65 -23.31 16 2 C 0.07 2.02 4.39 -17.47 -0.08 1.94 16 3 Si 0.91 21.44 29.59 -169.99 -5.03 16.41 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.35 -9.23 7.91 -14.93 -0.12 -9.35 16 8 H 0.08 1.98 7.27 -52.49 -0.38 1.60 16 9 N -0.43 -10.28 2.83 -107.73 -0.31 -10.58 16 10 C 0.48 11.45 6.96 -10.99 -0.08 11.37 16 11 O -0.53 -14.81 13.75 5.55 0.08 -14.73 16 12 C -0.13 -2.16 4.30 -27.89 -0.12 -2.28 16 13 C -0.08 -1.15 4.63 -27.88 -0.13 -1.28 16 14 C 0.00 0.02 5.13 -104.62 -0.54 -0.52 16 15 C -0.14 -1.49 9.70 -39.58 -0.38 -1.88 16 16 C -0.01 -0.13 9.52 -39.58 -0.38 -0.50 16 17 C -0.71 -6.69 6.03 -39.58 -0.24 -6.93 16 18 S 2.67 22.71 6.86 -107.50 -0.74 21.97 16 19 O -0.93 -9.98 17.30 -57.17 -0.99 -10.97 16 20 O -0.93 -10.08 17.30 -57.17 -0.99 -11.07 16 21 F -0.48 -3.84 17.91 2.25 0.04 -3.80 16 22 C -0.01 -0.12 9.52 -39.58 -0.38 -0.50 16 23 C -0.14 -1.54 9.70 -39.58 -0.38 -1.93 16 24 C 0.07 1.43 5.87 -67.93 -0.40 1.03 16 25 C -0.17 -3.04 9.80 -26.70 -0.26 -3.30 16 26 C -0.21 -3.41 10.36 -26.69 -0.28 -3.69 16 27 H 0.26 7.24 8.32 -40.82 -0.34 6.90 16 28 H 0.08 1.24 7.56 -51.93 -0.39 0.85 16 29 H 0.08 1.17 8.11 -51.92 -0.42 0.75 16 30 H 0.09 1.47 8.04 -51.93 -0.42 1.05 16 31 H 0.08 1.32 8.04 -51.93 -0.42 0.91 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.14 1.05 7.62 -52.49 -0.40 0.65 16 34 H 0.14 1.11 7.62 -52.49 -0.40 0.71 16 35 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.10 1.73 6.96 -51.93 -0.36 1.36 16 37 H 0.11 2.08 6.73 -51.93 -0.35 1.73 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 359.27 15.07 5.41 5.41 Total: -1.00 -35.25 359.27 -10.41 -45.67 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.79 Total: 2.82 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -3.76 Total: -17.81 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.35 Total: -33.89 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.90 Total: -36.77 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Atomic # 16 Polarization: 22.71 SS G_CDS: -0.74 Total: 21.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.25 -10.41 -45.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516802430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.848 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds