Wall clock time and date at job start Sat Apr 11 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09009 * 109.47409 * 230.49206 * 3 2 1 5 5 N 1.46502 * 109.47669 * 110.49548 * 3 2 1 6 6 S 1.65590 * 120.00228 * 94.99094 * 5 3 2 7 7 O 1.42100 * 106.40254 * 178.54596 * 6 5 3 8 8 O 1.42098 * 106.40609 * 311.47099 * 6 5 3 9 9 C 1.76202 * 107.21498 * 65.00897 * 6 5 3 10 10 C 1.38664 * 119.87525 * 269.72505 * 9 6 5 11 11 C 1.38611 * 120.50086 * 179.72321 * 10 9 6 12 12 C 1.37641 * 120.24623 * 0.55030 * 11 10 9 13 13 C 1.40699 * 119.74679 * 359.72730 * 12 11 10 14 14 C 1.41396 * 120.24430 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00298 * 204.37156 * 14 13 12 16 16 C 1.39951 * 119.99721 * 24.37286 * 14 13 12 17 17 N 1.30819 * 119.99857 * 17.88094 * 16 14 13 18 18 Si 1.86799 * 119.99693 * 197.87666 * 16 14 13 19 19 H 1.48500 * 109.47222 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46958 * 120.00437 * 18 16 14 21 21 H 1.48500 * 109.47214 * 240.00390 * 18 16 14 22 22 C 1.37599 * 119.87862 * 89.99906 * 9 6 5 23 23 C 1.50705 * 109.47410 * 350.49071 * 3 2 1 24 24 C 1.38235 * 119.99595 * 79.72673 * 23 3 2 25 25 C 1.38237 * 119.99769 * 179.81273 * 24 23 3 26 26 C 1.38241 * 119.99752 * 0.39337 * 25 24 23 27 27 C 1.38229 * 120.00001 * 359.86068 * 26 25 24 28 28 C 1.38231 * 120.00284 * 359.95435 * 27 26 25 29 29 H 4.18748 * 15.03810 * 359.97438 * 4 2 1 30 30 H 0.97006 * 119.99292 * 275.00765 * 5 3 2 31 31 H 1.07999 * 119.74541 * 359.97438 * 10 9 6 32 32 H 1.08002 * 119.87513 * 180.25322 * 11 10 9 33 33 H 1.08004 * 120.12562 * 179.74612 * 12 11 10 34 34 H 0.97006 * 119.99739 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.12755 * 359.97438 * 22 9 6 36 36 H 1.07997 * 120.00028 * 0.02562 * 24 23 3 37 37 H 1.07995 * 120.00180 * 180.23368 * 25 24 23 38 38 H 1.07998 * 119.99476 * 179.83006 * 26 25 24 39 39 H 1.08004 * 119.99907 * 179.97438 * 27 26 25 40 40 H 1.08002 * 120.00557 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0090 0.6546 0.7929 5 7 3.1342 0.4845 -1.2938 6 16 3.5272 2.0816 -1.4858 7 8 3.9926 2.2225 -2.8210 8 8 2.4393 2.8287 -0.9590 9 6 4.9076 2.4083 -0.4407 10 6 4.7016 2.8334 0.8630 11 6 5.7780 3.0886 1.6982 12 6 7.0655 2.9331 1.2371 13 6 7.2866 2.5077 -0.0857 14 6 8.6048 2.3439 -0.5702 15 1 8.8026 2.4083 -1.6299 16 6 9.6533 2.0983 0.3236 17 7 9.3951 1.6762 1.5346 18 14 11.4214 2.3730 -0.2127 19 1 11.4438 2.8490 -1.6192 20 1 12.0520 3.3920 0.6644 21 1 12.1740 1.0970 -0.1095 22 6 6.1861 2.2460 -0.9229 23 6 3.1490 -1.4004 0.2347 24 6 3.1785 -2.3078 -0.8077 25 6 3.6435 -3.5919 -0.5933 26 6 4.0714 -3.9708 0.6654 27 6 4.0370 -3.0650 1.7089 28 6 3.5755 -1.7798 1.4937 29 1 -1.0500 -0.0001 -0.0009 30 1 3.2270 -0.1308 -2.0379 31 1 3.6947 2.9627 1.2317 32 1 5.6058 3.4154 2.7131 33 1 7.9028 3.1364 1.8882 34 1 10.1219 1.5057 2.1540 35 1 6.3444 1.9187 -1.9398 36 1 2.8414 -2.0126 -1.7903 37 1 3.6701 -4.2997 -1.4085 38 1 4.4322 -4.9748 0.8334 39 1 4.3709 -3.3612 2.6924 40 1 3.5482 -1.0722 2.3091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664658564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:54 Heat of formation + Delta-G solvation = 25.708472 kcal Electronic energy + Delta-G solvation = -26496.137937 eV Core-core repulsion = 22754.967421 eV Total energy + Delta-G solvation = -3741.170516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.087 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.54583 -37.67101 -36.77439 -36.09877 -35.33405 -33.87423 -32.17216 -31.05434 -30.69246 -30.10605 -29.82308 -26.18035 -25.50396 -22.68652 -21.91781 -21.69943 -21.01340 -19.22989 -18.58229 -18.00633 -17.44973 -16.76767 -15.96430 -15.88923 -15.24569 -15.16948 -14.90426 -14.82222 -14.53701 -14.02899 -13.49531 -13.41130 -13.37684 -13.22022 -12.62622 -12.60630 -11.94766 -11.75327 -11.64134 -11.59265 -11.49147 -11.43139 -11.39850 -11.09861 -11.00968 -10.92790 -10.62474 -10.47054 -10.18167 -10.01897 -9.75111 -9.37975 -9.36956 -8.92253 -8.82345 -8.07189 -7.73200 -6.95281 -4.55596 0.90644 1.29601 1.40011 2.15325 2.60156 2.75864 2.87750 2.99188 3.02675 3.06151 3.61359 3.77184 3.81511 4.19446 4.35203 4.41971 4.73607 4.79797 4.97286 5.00571 5.08656 5.18346 5.37269 5.45416 5.50787 5.79649 5.88048 5.95271 6.01925 6.03944 6.14151 6.41889 6.48935 6.55264 6.63177 6.73638 6.80204 6.94913 6.99951 7.08413 7.19121 7.35273 7.64577 7.69814 7.78887 7.91975 8.38307 8.64611 8.69462 10.00064 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010391 B = 0.004220 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.941776 B = 6634.128902 C = 8078.362366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.192 4.192 3 C 0.311 3.689 4 H 0.118 0.882 5 N -1.110 6.110 6 S 2.684 3.316 7 O -0.968 6.968 8 O -0.967 6.967 9 C -0.631 4.631 10 C -0.154 4.154 11 C -0.118 4.118 12 C -0.118 4.118 13 C 0.093 3.907 14 C -0.459 4.459 15 H 0.083 0.917 16 C 0.076 3.924 17 N -0.792 5.792 18 Si 0.910 3.090 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.273 1.273 22 C -0.121 4.121 23 C -0.082 4.082 24 C -0.104 4.104 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.099 4.099 29 H 0.219 0.781 30 H 0.415 0.585 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.283 0.717 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.440 -9.274 0.984 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.194 4.194 3 C 0.204 3.796 4 H 0.136 0.864 5 N -0.866 5.866 6 S 2.780 3.220 7 O -0.959 6.959 8 O -0.957 6.957 9 C -0.723 4.723 10 C -0.175 4.175 11 C -0.138 4.138 12 C -0.138 4.138 13 C 0.089 3.911 14 C -0.488 4.488 15 H 0.102 0.898 16 C -0.143 4.143 17 N -0.417 5.417 18 Si 0.734 3.266 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.198 1.198 22 C -0.142 4.142 23 C -0.084 4.084 24 C -0.122 4.122 25 C -0.138 4.138 26 C -0.136 4.136 27 C -0.134 4.134 28 C -0.117 4.117 29 H 0.235 0.765 30 H 0.250 0.750 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.773 -8.628 0.749 13.058 hybrid contribution 1.334 -0.383 0.112 1.392 sum -8.439 -9.011 0.861 12.375 Atomic orbital electron populations 1.24853 0.95720 1.00378 0.98838 1.23173 0.94218 1.00530 1.01433 1.16188 0.83427 0.93754 0.86238 0.86402 1.55849 1.81722 1.30260 1.18763 1.01876 0.74407 0.71812 0.73863 1.93545 1.82419 1.84550 1.35382 1.93536 1.52831 1.68510 1.80852 1.29679 1.14026 1.18504 1.10089 1.20086 0.97871 1.07172 0.92390 1.20797 0.93471 1.01603 0.97899 1.21639 0.95506 0.99345 0.97303 1.17682 0.92567 0.89140 0.91710 1.19664 0.91193 1.42713 0.95247 0.89843 1.25930 1.02036 0.91933 0.94361 1.69785 1.35185 1.30580 1.06181 0.86217 0.81034 0.78931 0.80393 1.18179 1.19569 1.19838 1.20777 0.90656 1.03294 0.99505 1.19650 1.00133 0.94102 0.94519 1.20891 0.99412 0.93335 0.98571 1.21091 0.99349 0.96105 0.97237 1.21175 0.99611 0.99603 0.93184 1.21126 0.99500 0.93466 0.99323 1.21054 0.97699 0.96678 0.96290 0.76457 0.74987 0.87584 0.88337 0.85726 0.90621 0.87021 0.86076 0.85960 0.86101 0.85763 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 19.25 29.55 0.57 -1.66 16 2 C -0.19 -2.75 12.86 -37.13 -0.48 -3.23 16 3 C 0.31 4.57 2.81 -71.87 -0.20 4.37 16 4 H 0.12 1.76 7.10 -51.92 -0.37 1.39 16 5 N -1.11 -17.05 5.38 -8.31 -0.04 -17.10 16 6 S 2.68 51.06 5.65 -107.50 -0.61 50.46 16 7 O -0.97 -20.46 17.27 -57.17 -0.99 -21.44 16 8 O -0.97 -19.92 17.02 -57.17 -0.97 -20.90 16 9 C -0.63 -13.63 5.81 -39.66 -0.23 -13.86 16 10 C -0.15 -3.27 8.92 -39.29 -0.35 -3.62 16 11 C -0.12 -2.59 10.02 -39.66 -0.40 -2.99 16 12 C -0.12 -2.89 8.70 -38.87 -0.34 -3.22 16 13 C 0.09 2.36 5.58 -106.83 -0.60 1.77 16 14 C -0.46 -11.66 9.05 -37.74 -0.34 -12.01 16 15 H 0.08 2.05 7.91 -52.49 -0.42 1.64 16 16 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 17 N -0.79 -19.26 10.95 55.55 0.61 -18.65 16 18 Si 0.91 17.87 29.60 -169.99 -5.03 12.84 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 C -0.12 -2.88 9.26 -38.87 -0.36 -3.24 16 23 C -0.08 -1.12 4.92 -104.62 -0.51 -1.64 16 24 C -0.10 -1.28 9.14 -39.58 -0.36 -1.64 16 25 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 26 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 27 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 28 C -0.10 -1.28 9.67 -39.59 -0.38 -1.66 16 29 H 0.22 1.81 7.80 -54.09 -0.42 1.38 16 30 H 0.42 5.39 7.10 -34.47 -0.24 5.15 16 31 H 0.11 2.02 7.59 -52.49 -0.40 1.62 16 32 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.13 3.10 6.16 -52.48 -0.32 2.78 16 34 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 35 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 36 H 0.12 1.29 6.83 -52.49 -0.36 0.93 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.13 1.51 8.04 -52.49 -0.42 1.08 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -31.27 365.11 -10.97 -42.25 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -4.18 Total: 13.10 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: -5.27 Total: -46.06 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.56 Total: -35.74 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.96 Total: -42.34 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 51.06 SS G_CDS: -0.61 Total: 50.46 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.27 -10.97 -42.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664658564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.957 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds